PubRank

Jim Leebens-Mack

Author PubWeight™ 93.81‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008 31.04
2 Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol 2008 12.96
3 Ancestral polyploidy in seed plants and angiosperms. Nature 2011 7.00
4 Polyploidy and angiosperm diversification. Am J Bot 2009 4.41
5 The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 2012 3.53
6 Comparison of next generation sequencing technologies for transcriptome characterization. BMC Genomics 2009 2.60
7 Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol 2010 2.50
8 Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol Biol Evol 2005 2.18
9 A genome triplication associated with early diversification of the core eudicots. Genome Biol 2012 1.80
10 PlantTribes: a gene and gene family resource for comparative genomics in plants. Nucleic Acids Res 2007 1.65
11 Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. Plant J 2007 1.44
12 ChloroplastDB: the Chloroplast Genome Database. Nucleic Acids Res 2006 1.39
13 Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Stand Genomic Sci 2010 1.35
14 The impact of multiple protein sequence alignment on phylogenetic estimation. IEEE/ACM Trans Comput Biol Bioinform 2011 1.31
15 Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science 2013 1.31
16 Insights into the Musa genome: syntenic relationships to rice and between Musa species. BMC Genomics 2008 1.30
17 Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J 2007 1.28
18 Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Res 2008 1.12
19 Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications. Mol Biol Evol 2003 1.08
20 Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications. Mol Biol Evol 2009 1.08
21 Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). Am J Bot 2012 1.08
22 The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression. Trends Plant Sci 2007 1.03
23 Parallel loss of plastid introns and their maturase in the genus Cuscuta. PLoS One 2009 1.02
24 Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. BMC Evol Biol 2006 0.98
25 The Amborella genome: an evolutionary reference for plant biology. Genome Biol 2008 0.95
26 Floral homeotic C function genes repress specific B function genes in the carpel whorl of the basal eudicot California poppy (Eschscholzia californica). Evodevo 2010 0.94
27 A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biol 2011 0.93
28 The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid. Comput Syst Bioinformatics Conf 2008 0.90
29 Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach. BMC Med Genomics 2013 0.89
30 Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae). Proc Natl Acad Sci U S A 2009 0.87
31 Towards improved reconstruction of ancestral gene order in angiosperm phylogeny. J Comput Biol 2009 0.86
32 Homoploid hybrid origin of Yucca gloriosa: intersectional hybrid speciation in Yucca (Agavoideae, Asparagaceae). Ecol Evol 2012 0.83
33 Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)? Ann Bot 2013 0.83
34 Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies. BMC Plant Biol 2013 0.78
35 Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.). Plant Sci 2013 0.78
36 Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants. BMC Genomics 2014 0.75