Published in Genome Biol on March 19, 2008
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Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts. Genome Res (2003) 1.92
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Endogenous isoflavones are essential for the establishment of symbiosis between soybean and Bradyrhizobium japonicum. Plant J (2006) 1.27
Distinct, crucial roles of flavonoids during legume nodulation. Trends Plant Sci (2007) 1.24
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Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture. Genome Biol (2005) 1.09
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Improvement of whole-genome annotation of cereals through comparative analyses. Genome Res (2007) 0.90
A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray. Plant Mol Biol (2005) 0.89
Lotus japonicus gene Ljsbp is highly conserved among plants and animals and encodes a homologue to the mammalian selenium-binding proteins. Mol Plant Microbe Interact (2002) 0.88
Promoter trapping in Lotus japonicus reveals novel root and nodule GUS expression domains. Plant Cell Physiol (2005) 0.80
Global identification of human transcribed sequences with genome tiling arrays. Science (2004) 17.85
Non-canonical inflammasome activation targets caspase-11. Nature (2011) 8.85
The genome of the sea urchin Strongylocentrotus purpuratus. Science (2006) 6.41
A gene expression map for the euchromatic genome of Drosophila melanogaster. Science (2004) 5.38
Functional profiling of a human cytomegalovirus genome. Proc Natl Acad Sci U S A (2003) 5.21
Noncanonical inflammasome activation by intracellular LPS independent of TLR4. Science (2013) 5.06
Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies. Genome Res (2007) 4.59
Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell (2007) 4.13
The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol (2004) 3.59
Estimating genome conservation between crop and model legume species. Proc Natl Acad Sci U S A (2004) 3.55
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics (2007) 3.54
Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes Dev (2002) 3.41
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Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. Proc Natl Acad Sci U S A (2005) 3.21
A core transcriptional network for early mesoderm development in Drosophila melanogaster. Genes Dev (2007) 3.01
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell (2010) 2.92
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics (2011) 2.84
The COP9 signalosome: more than a protease. Trends Biochem Sci (2008) 2.81
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A (2006) 2.61
High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet (2008) 2.59
Amyloid precursor protein regulates brain apolipoprotein E and cholesterol metabolism through lipoprotein receptor LRP1. Neuron (2007) 2.55
Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. EMBO J (2008) 2.54
A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet (2009) 2.53
Genome-wide transcription analyses in rice using tiling microarrays. Nat Genet (2005) 2.39
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Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade. Proc Natl Acad Sci U S A (2012) 2.34
COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol Cell (2008) 2.34
Rapid development of colitis in NSAID-treated IL-10-deficient mice. Gastroenterology (2002) 2.27
Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiol (2005) 2.23
Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. Plant Cell (2002) 2.21
Oxysterols direct immune cell migration via EBI2. Nature (2011) 2.19
In vivo blockade of OX40 ligand inhibits thymic stromal lymphopoietin driven atopic inflammation. J Clin Invest (2007) 2.18
Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes. Proc Natl Acad Sci U S A (2005) 2.09
Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiol (2007) 2.01
MicroRNA 23b regulates autophagy associated with radioresistance of pancreatic cancer cells. Gastroenterology (2013) 2.00
Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps. Genetics (2006) 1.97
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome. Genome Res (2006) 1.95
Esrrb activates Oct4 transcription and sustains self-renewal and pluripotency in embryonic stem cells. J Biol Chem (2008) 1.95
Specific Btk inhibition suppresses B cell- and myeloid cell-mediated arthritis. Nat Chem Biol (2010) 1.94
Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics (2008) 1.92
Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell (2012) 1.91
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell (2008) 1.85
Arabidopsis COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1 and the COP9 signalosome in repressing photomorphogenesis. Genes Dev (2002) 1.81
Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Proc Natl Acad Sci U S A (2004) 1.79
Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J Mol Evol (2002) 1.77
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res (2005) 1.77
Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol Biol (2007) 1.76
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res (2005) 1.71
AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants. Cell Res (2005) 1.66
Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. Proc Natl Acad Sci U S A (2006) 1.64
N-terminal domain-mediated homodimerization is required for photoreceptor activity of Arabidopsis CRYPTOCHROME 1. Plant Cell (2005) 1.60
Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. Plant Cell (2005) 1.58
The COP9 signalosome: regulating plant development through the control of proteolysis. Annu Rev Plant Biol (2003) 1.53
Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation. Plant J (2010) 1.53
Integration of light and abscisic acid signaling during seed germination and early seedling development. Proc Natl Acad Sci U S A (2008) 1.52
Legumes as a model plant family. Genomics for food and feed report of the Cross-Legume Advances Through Genomics Conference. Plant Physiol (2005) 1.52
Depletion of neutrophils in IL-10(-/-) mice delays clearance of gastric Helicobacter infection and decreases the Th1 immune response to Helicobacter. J Immunol (2003) 1.51
Multiple ubiquitin ligase-mediated processes require COP9 signalosome and AXR1 function. Plant Cell (2002) 1.51
Overprescribing in China, driven by financial incentives, results in very high use of antibiotics, injections, and corticosteroids. Health Aff (Millwood) (2012) 1.48
Phylogeny and genomic organization of the TIR and non-tIR NBS-LRR resistance gene family in Medicago truncatula. Mol Plant Microbe Interact (2002) 1.47
Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proc Natl Acad Sci U S A (2011) 1.46
Disruption of the COP9 signalosome Csn2 subunit in mice causes deficient cell proliferation, accumulation of p53 and cyclin E, and early embryonic death. Mol Cell Biol (2003) 1.46
An in vivo human-plasmablast enrichment technique allows rapid identification of therapeutic influenza A antibodies. Cell Host Microbe (2013) 1.46
A genome-wide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids. Mol Plant (2008) 1.44
Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis. Plant Cell (2009) 1.43
Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana. BMC Plant Biol (2005) 1.43
RNA interference of soybean isoflavone synthase genes leads to silencing in tissues distal to the transformation site and to enhanced susceptibility to Phytophthora sojae. Plant Physiol (2005) 1.42
The transcriptome of the sea urchin embryo. Science (2006) 1.42
Global identification and characterization of transcriptionally active regions in the rice genome. PLoS One (2007) 1.41
Comparisons of three methods for organic and inorganic carbon in calcareous soils of northwestern China. PLoS One (2012) 1.38
Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile. Genetics (2005) 1.38
Neuronal LRP1 knockout in adult mice leads to impaired brain lipid metabolism and progressive, age-dependent synapse loss and neurodegeneration. J Neurosci (2010) 1.38
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biol (2003) 1.37
A high-density SNP genotyping array for rice biology and molecular breeding. Mol Plant (2013) 1.36
Flavones and flavonols play distinct critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti. Plant J (2008) 1.35
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol (2008) 1.34
The Reference Genome of the Halophytic Plant Eutrema salsugineum. Front Plant Sci (2013) 1.34
Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression. Plant Mol Biol (2010) 1.33
Curcumin-loaded biodegradable polymeric micelles for colon cancer therapy in vitro and in vivo. Nanoscale (2011) 1.32
NMPP: a user-customized NimbleGen microarray data processing pipeline. Bioinformatics (2006) 1.30
EXPO, an exocyst-positive organelle distinct from multivesicular endosomes and autophagosomes, mediates cytosol to cell wall exocytosis in Arabidopsis and tobacco cells. Plant Cell (2010) 1.30
Heparan sulphate proteoglycan and the low-density lipoprotein receptor-related protein 1 constitute major pathways for neuronal amyloid-beta uptake. J Neurosci (2011) 1.28