Published in Mol Plant Microbe Interact on May 01, 2008
Ethylene signaling regulates accumulation of the FLS2 receptor and is required for the oxidative burst contributing to plant immunity. Plant Physiol (2010) 1.54
Protein poly(ADP-ribosyl)ation regulates arabidopsis immune gene expression and defense responses. PLoS Genet (2015) 1.53
Vitamin deficiencies in humans: can plant science help? Plant Cell (2012) 1.33
Chemical diversity and defence metabolism: how plants cope with pathogens and ozone pollution. Int J Mol Sci (2009) 1.13
Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress. Plant Physiol (2009) 1.12
AtNUDX6, an ADP-ribose/NADH pyrophosphohydrolase in Arabidopsis, positively regulates NPR1-dependent salicylic acid signaling. Plant Physiol (2010) 1.03
The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development. Plant Physiol (2009) 1.02
Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis. Plant Physiol (2008) 1.02
Modulation of the poly(ADP-ribosyl)ation reaction via the Arabidopsis ADP-ribose/NADH pyrophosphohydrolase, AtNUDX7, is involved in the response to oxidative stress. Plant Physiol (2009) 0.99
PARP2 Is the Predominant Poly(ADP-Ribose) Polymerase in Arabidopsis DNA Damage and Immune Responses. PLoS Genet (2015) 0.90
Mapping Fusarium wilt race 1 resistance genes in cotton by inheritance, QTL and sequencing composition. Mol Genet Genomics (2011) 0.89
Microbial pathogens trigger host DNA double-strand breaks whose abundance is reduced by plant defense responses. PLoS Pathog (2014) 0.89
Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms. PLoS One (2012) 0.87
Modulation of redox homeostasis under suboptimal conditions by Arabidopsis nudix hydrolase 7. BMC Plant Biol (2010) 0.87
NAD Acts as an Integral Regulator of Multiple Defense Layers. Plant Physiol (2016) 0.87
New clues in the nucleus: transcriptional reprogramming in effector-triggered immunity. Front Plant Sci (2013) 0.85
RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana. J Exp Bot (2010) 0.84
NAD: not just a pawn on the board of plant-pathogen interactions. Plant Signal Behav (2012) 0.84
Poly(ADP-ribose)polymerase activity controls plant growth by promoting leaf cell number. PLoS One (2014) 0.83
Distinct regulation of Arabidopsis ADP-ribose/NADH pyrophosphohydrolases, AtNUDX6 and 7, in biotic and abiotic stress responses. Plant Signal Behav (2010) 0.82
Radical-induced cell death1 and similar to RCD one1 and the stress-induced morphogenetic response. Plant Signal Behav (2010) 0.81
Analysis of poly(ADP-Ribose) polymerases in Arabidopsis telomere biology. PLoS One (2014) 0.81
AvrRpm1 missense mutations weakly activate RPS2-mediated immune response in Arabidopsis thaliana. PLoS One (2012) 0.80
No Silver Bullet - Canonical Poly(ADP-Ribose) Polymerases (PARPs) Are No Universal Factors of Abiotic and Biotic Stress Resistance of Arabidopsis thaliana. Front Plant Sci (2017) 0.75
Sequence composition of BAC clones and SSR markers mapped to Upland cotton chromosomes 11 and 21 targeting resistance to soil-borne pathogens. Front Plant Sci (2015) 0.75
Protein ADP-Ribosylation Takes Control in Plant-Bacterium Interactions. PLoS Pathog (2016) 0.75
Elucidation of the small RNA component of the transcriptome. Science (2005) 8.66
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell (2003) 7.66
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol (2008) 6.18
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res (2006) 4.08
An expression atlas of rice mRNAs and small RNAs. Nat Biotechnol (2007) 3.45
Plant NBS-LRR proteins: adaptable guards. Genome Biol (2006) 3.38
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics (2006) 3.10
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res (2006) 2.95
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A (2008) 2.92
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev (2011) 2.66
Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science (2010) 2.62
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol (2008) 2.51
Synaptotagmin-mediated bending of the target membrane is a critical step in Ca(2+)-regulated fusion. Cell (2009) 2.47
Construction of small RNA cDNA libraries for deep sequencing. Methods (2007) 2.43
High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res (2006) 2.30
Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res (2002) 2.27
MEKK1 is required for flg22-induced MPK4 activation in Arabidopsis plants. Plant Physiol (2006) 2.22
Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc (2009) 2.12
Genetics and functional genomics of legume nodulation. Curr Opin Plant Biol (2006) 2.09
TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J (2002) 2.02
Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean. Science (2012) 2.01
A spatial dissection of the Arabidopsis floral transcriptome by MPSS. BMC Plant Biol (2008) 1.99
Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis. Plant Physiol (2004) 1.96
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell (2004) 1.94
The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana. Genetics (2004) 1.93
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell (2011) 1.93
Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proc Natl Acad Sci U S A (2008) 1.92
Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript. J Virol (2006) 1.91
Within-species flagellin polymorphism in Xanthomonas campestris pv campestris and its impact on elicitation of Arabidopsis FLAGELLIN SENSING2-dependent defenses. Plant Cell (2006) 1.84
Divergence in expression between duplicated genes in Arabidopsis. Mol Biol Evol (2007) 1.83
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol Plant Microbe Interact (2007) 1.77
Synaptotagmin-IV modulates synaptic function and long-term potentiation by regulating BDNF release. Nat Neurosci (2009) 1.74
Nonlegumes respond to rhizobial Nod factors by suppressing the innate immune response. Science (2013) 1.72
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell (2013) 1.69
Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol Biol (2008) 1.59
Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiol (2007) 1.59
Short-read sequencing technologies for transcriptional analyses. Annu Rev Plant Biol (2009) 1.55
Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics (2005) 1.54
Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum. Plant Physiol (2005) 1.51
Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. BMC Plant Biol (2007) 1.50
Deep sequencing of chicken microRNAs. BMC Genomics (2008) 1.48
Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife (2013) 1.48
Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. Mol Biol Evol (2004) 1.46
Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. New Phytol (2011) 1.44
Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. PLoS Genet (2008) 1.43
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J (2011) 1.42
Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid. Plant Cell (2009) 1.41
The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation. Curr Biol (2012) 1.40
Arabidopsis DND2, a second cyclic nucleotide-gated ion channel gene for which mutation causes the "defense, no death" phenotype. Mol Plant Microbe Interact (2004) 1.39
Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics (2010) 1.39
Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A (2012) 1.39
The Arabidopsis flagellin receptor FLS2 mediates the perception of Xanthomonas Ax21 secreted peptides. Proc Natl Acad Sci U S A (2011) 1.37
Sequence conservation and differential expression of Marek's disease virus microRNAs. J Virol (2008) 1.34
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. PLoS One (2011) 1.33
RNA-directed DNA methylation and plant development require an IWR1-type transcription factor. EMBO Rep (2009) 1.32
Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet (2009) 1.29
Dm3 is one member of a large constitutively expressed family of nucleotide binding site-leucine-rich repeat encoding genes. Mol Plant Microbe Interact (2002) 1.27
The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. Plant Cell (2009) 1.27
Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. Plant Cell (2006) 1.27
RNA-mediated trans-communication can establish paramutation at the b1 locus in maize. Proc Natl Acad Sci U S A (2010) 1.26
Uncoupling the roles of synaptotagmin I during endo- and exocytosis of synaptic vesicles. Nat Neurosci (2011) 1.26
Synaptotagmin C2B domain regulates Ca2+-triggered fusion in vitro: critical residues revealed by scanning alanine mutagenesis. J Biol Chem (2008) 1.25
Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. BMC Genomics (2006) 1.24
Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana. Mol Plant Microbe Interact (2004) 1.21
Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. Plant Cell (2007) 1.21
Identification and mutational analysis of Arabidopsis FLS2 leucine-rich repeat domain residues that contribute to flagellin perception. Plant Cell (2007) 1.20
The cyanobactin heterocyclase enzyme: a processive adenylase that operates with a defined order of reaction. Angew Chem Int Ed Engl (2013) 1.20
Characterization of paralogous protein families in rice. BMC Plant Biol (2008) 1.19
RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigenetics (2012) 1.19
A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics (2007) 1.17
Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor Appl Genet (2009) 1.17
Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing. Proc Natl Acad Sci U S A (2013) 1.16
Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Res (2011) 1.13
Small RNA-mediated epigenetic modifications in plants. Curr Opin Plant Biol (2010) 1.13
siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Res (2010) 1.12
Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress. Plant Physiol (2009) 1.12
Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. Plant J (2007) 1.12
Distinct extremely abundant siRNAs associated with cosuppression in petunia. RNA (2009) 1.12
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am J Bot (2011) 1.11
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A (2012) 1.11
Functional analyses of the Pto resistance gene family in tomato and the identification of a minor resistance determinant in a susceptible haplotype. Mol Plant Microbe Interact (2002) 1.10
AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana. PLoS One (2011) 1.09
Probing the Arabidopsis flagellin receptor: FLS2-FLS2 association and the contributions of specific domains to signaling function. Plant Cell (2012) 1.09
Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics (2008) 1.09
Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics (2010) 1.08
Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies. Methods Mol Biol (2010) 1.08
Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biol (2010) 1.07