Published in Plant Cell on April 01, 2003
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature (2010) 9.52
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell (2004) 7.11
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell (2004) 4.59
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res (2006) 4.08
The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol (2004) 3.59
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
Plant NBS-LRR proteins: adaptable guards. Genome Biol (2006) 3.38
A gain-of-function mutation in a plant disease resistance gene leads to constitutive activation of downstream signal transduction pathways in suppressor of npr1-1, constitutive 1. Plant Cell (2003) 3.00
Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. PLoS Genet (2009) 2.83
Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition. EMBO J (2004) 2.81
Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol (2006) 2.74
How do plants achieve immunity? Defence without specialized immune cells. Nat Rev Immunol (2012) 2.67
Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Cell (2007) 2.66
A genome-wide survey of R gene polymorphisms in Arabidopsis. Plant Cell (2006) 2.64
Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics (2004) 2.56
Genome organization of more than 300 defensin-like genes in Arabidopsis. Plant Physiol (2005) 2.54
NB-LRR proteins: pairs, pieces, perception, partners, and pathways. Curr Opin Plant Biol (2010) 2.45
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol (2005) 2.41
AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.33
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell (2012) 2.32
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.29
Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication. Genome Biol (2009) 2.17
Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector. Cell (2008) 2.16
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol (2008) 2.14
A putative nucleoporin 96 Is required for both basal defense and constitutive resistance responses mediated by suppressor of npr1-1,constitutive 1. Plant Cell (2005) 2.06
Recent duplications dominate NBS-encoding gene expansion in two woody species. Mol Genet Genomics (2008) 2.04
A haplotype-specific Resistance gene regulated by BONZAI1 mediates temperature-dependent growth control in Arabidopsis. Plant Cell (2004) 2.03
Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiol (2007) 2.01
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics (2005) 2.01
RAR1 positively controls steady state levels of barley MLA resistance proteins and enables sufficient MLA6 accumulation for effective resistance. Plant Cell (2004) 1.98
Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol (2004) 1.96
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell (2004) 1.94
Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks. Plant Physiol (2004) 1.94
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res (2008) 1.90
Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol (2006) 1.89
Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc Natl Acad Sci U S A (2003) 1.85
Elicitor-mediated oligomerization of the tobacco N disease resistance protein. Plant Cell (2005) 1.84
NLR functions in plant and animal immune systems: so far and yet so close. Nat Immunol (2011) 1.82
RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack. PLoS Biol (2009) 1.80
The genome of Prunus mume. Nat Commun (2012) 1.80
Fitness costs of mutations affecting the systemic acquired resistance pathway in Arabidopsis thaliana. Genetics (2004) 1.78
Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation. Plant Physiol (2006) 1.75
Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics (2012) 1.75
Draft genome of the kiwifruit Actinidia chinensis. Nat Commun (2013) 1.72
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell (2013) 1.69
Computational identification and characterization of novel genes from legumes. Plant Physiol (2004) 1.67
Genome sequence of mungbean and insights into evolution within Vigna species. Nat Commun (2014) 1.62
Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana. Genetics (2006) 1.61
The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes. PLoS Pathog (2014) 1.59
Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis. Plant Physiol (2005) 1.55
Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation. Proc Natl Acad Sci U S A (2008) 1.51
Identification and analyses of candidate genes for rpp4-mediated resistance to Asian soybean rust in soybean. Plant Physiol (2009) 1.51
Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes. Genetics (2009) 1.51
Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. BMC Plant Biol (2007) 1.50
Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol (2012) 1.48
Suppression by ABA of salicylic acid and lignin accumulation and the expression of multiple genes, in Arabidopsis infected with Pseudomonas syringae pv. tomato. Funct Integr Genomics (2006) 1.47
A cluster of disease resistance genes in Arabidopsis is coordinately regulated by transcriptional activation and RNA silencing. Plant Cell (2007) 1.43
PRGdb: a bioinformatics platform for plant resistance gene analysis. Nucleic Acids Res (2009) 1.40
The crystal structure of Pseudomonas avirulence protein AvrPphB: a papain-like fold with a distinct substrate-binding site. Proc Natl Acad Sci U S A (2003) 1.38
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biol (2003) 1.37
Draft genome sequence of adzuki bean, Vigna angularis. Sci Rep (2015) 1.37
Patterns of expansion and expression divergence in the plant polygalacturonase gene family. Genome Biol (2006) 1.36
Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice. Plant Cell (2007) 1.36
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol (2008) 1.34
Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family. Mol Genet Genomics (2009) 1.33
Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol (2011) 1.32
Receptor-mediated signalling in plants: molecular patterns and programmes. J Exp Bot (2009) 1.31
Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell (2016) 1.30
Extensive functional diversification of the Populus glutathione S-transferase supergene family. Plant Cell (2009) 1.29
Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc Natl Acad Sci U S A (2010) 1.29
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa. Mol Genet Genomics (2009) 1.29
Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice. Mol Genet Genomics (2010) 1.24
A new eye on NLR proteins: focused on clarity or diffused by complexity? Curr Opin Immunol (2012) 1.24
Unique evolutionary pattern of numbers of gramineous NBS-LRR genes. Mol Genet Genomics (2010) 1.24
Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection. BMC Genomics (2007) 1.24
Plant nucleotide binding site-leucine-rich repeat (NBS-LRR) genes: active guardians in host defense responses. Int J Mol Sci (2013) 1.23
Arabidopsis and the plant immune system. Plant J (2010) 1.23
Evolution and Conservation of Plant NLR Functions. Front Immunol (2013) 1.22
Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB. Proc Natl Acad Sci U S A (2008) 1.20
Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to Plum pox virus infection. BMC Genomics (2008) 1.20
Gene duplication and hypermutation of the pathogen Resistance gene SNC1 in the Arabidopsis bal variant. Genetics (2009) 1.19
The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1. Genetics (2007) 1.19
Transposed genes in Arabidopsis are often associated with flanking repeats. PLoS Genet (2010) 1.19
Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proc Natl Acad Sci U S A (2009) 1.18
The leucine-rich repeat domain in plant innate immunity: a wealth of possibilities. Cell Microbiol (2008) 1.18
A constitutive shade-avoidance mutant implicates TIR-NBS-LRR proteins in Arabidopsis photomorphogenic development. Plant Cell (2006) 1.17
The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines. BMC Genet (2009) 1.17
A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiol (2009) 1.17
Dynamic nucleotide-binding site and leucine-rich repeat-encoding genes in the grass family. Plant Physiol (2012) 1.16
Molecular analysis of a large subtelomeric nucleotide-binding-site-leucine-rich-repeat family in two representative genotypes of the major gene pools of Phaseolus vulgaris. Genetics (2008) 1.16
New insights in plant immunity signaling activation. Curr Opin Plant Biol (2011) 1.16
Regulation of the expression of plant resistance gene SNC1 by a protein with a conserved BAT2 domain. Plant Physiol (2010) 1.16
The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus. Genetics (2007) 1.15
A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance. BMC Plant Biol (2008) 1.15
Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean. BMC Plant Biol (2012) 1.13
Allelic series of four powdery mildew resistance genes at the Pm3 locus in hexaploid bread wheat. Plant Physiol (2005) 1.13
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes. Nucleic Acids Res (2009) 1.12
Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. Genome Res (2011) 1.12
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol (1980) 113.75
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 70.33
T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol (2000) 57.88
Profile hidden Markov models. Bioinformatics (1998) 56.04
The Pfam protein families database. Nucleic Acids Res (2002) 51.34
Predicting coiled coils from protein sequences. Science (1991) 38.18
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J (1982) 38.14
SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci U S A (1998) 36.83
Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease. Nature (2001) 33.12
A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease. Nature (2001) 28.24
Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins (1997) 26.91
The GTPase superfamily: conserved structure and molecular mechanism. Nature (1991) 19.64
Plant pathogens and integrated defence responses to infection. Nature (2001) 14.67
The P-loop--a common motif in ATP- and GTP-binding proteins. Trends Biochem Sci (1990) 14.55
Resistance gene-dependent plant defense responses. Plant Cell (1996) 9.81
A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science (1995) 9.79
Mutation of a new gene encoding a putative pyrin-like protein causes familial cold autoinflammatory syndrome and Muckle-Wells syndrome. Nat Genet (2001) 9.34
Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science (1993) 9.00
RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science (1994) 8.99
MyD88 is an adaptor protein in the hToll/IL-1 receptor family signaling pathways. Mol Cell (1998) 8.73
The origins of genomic duplications in Arabidopsis. Science (2000) 8.57
Speculations on RNA splicing. Cell (1981) 8.28
Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science (1995) 7.83
The value of prior knowledge in discovering motifs with MEME. Proc Int Conf Intell Syst Mol Biol (1995) 7.31
The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Cell (1994) 6.88
Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res (1998) 6.01
Mal (MyD88-adapter-like) is required for Toll-like receptor-4 signal transduction. Nature (2001) 5.95
Signaling in plant-microbe interactions. Science (1997) 5.94
CARD15 mutations in Blau syndrome. Nat Genet (2001) 5.79
Coiled coils: a highly versatile protein folding motif. Trends Cell Biol (2001) 5.55
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins (2002) 5.29
Death Don't Have No Mercy: Cell Death Programs in Plant-Microbe Interactions. Plant Cell (1996) 5.16
The hidden duplication past of Arabidopsis thaliana. Proc Natl Acad Sci U S A (2002) 5.00
Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol (2002) 4.90
Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science (1994) 4.78
Plant Disease Resistance Genes: Function Meets Structure. Plant Cell (1996) 4.47
The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell (1995) 4.22
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell (1997) 4.21
Plant disease-resistance proteins and the gene-for-gene concept. Trends Biochem Sci (1998) 4.06
Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity. Plant Cell (1999) 3.87
Resistance gene complexes: evolution and utilization. Annu Rev Phytopathol (2001) 3.80
Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J (1999) 3.71
Genes controlling expression of defense responses in Arabidopsis--2001 status. Curr Opin Plant Biol (2001) 3.54
Hypersensitive response-related death. Plant Mol Biol (2000) 3.49
Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell (1998) 3.47
Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding region. Plant Cell (1997) 3.46
Regulatory role of SGT1 in early R gene-mediated plant defenses. Science (2002) 3.43
The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol (1998) 3.42
PYPAF7, a novel PYRIN-containing Apaf1-like protein that regulates activation of NF-kappa B and caspase-1-dependent cytokine processing. J Biol Chem (2002) 3.28
Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis. Plant Cell (1999) 3.18
The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes. Plant Cell (1998) 3.15
The Toll-receptor family and control of innate immunity. Curr Opin Immunol (1999) 3.08
Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell (1998) 2.97
Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato. Proc Natl Acad Sci U S A (1999) 2.95
The functions and consensus motifs of nine types of peptide segments that form different types of nucleotide-binding sites. Eur J Biochem (1994) 2.94
Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death. EMBO J (2002) 2.90
The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance genes. Plant J (1999) 2.85
Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell (1998) 2.83
Methods and statistics for combining motif match scores. J Comput Biol (1998) 2.76
The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci (2000) 2.58
The domains of death: evolution of the apoptosis machinery. Trends Biochem Sci (1999) 2.56
Rapid reorganization of resistance gene homologues in cereal genomes. Proc Natl Acad Sci U S A (1998) 2.53
Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance. Proc Natl Acad Sci U S A (2000) 2.47
Role of cytochrome c and dATP/ATP hydrolysis in Apaf-1-mediated caspase-9 activation and apoptosis. EMBO J (1999) 2.45
A mutation within the leucine-rich repeat domain of the Arabidopsis disease resistance gene RPS5 partially suppresses multiple bacterial and downy mildew resistance genes. Plant Cell (1998) 2.44
Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell (1998) 2.43
Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato. Plant J (2002) 2.43
GenomePixelizer--a visualization program for comparative genomics within and between species. Bioinformatics (2002) 2.41
Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes. Proc Natl Acad Sci U S A (2002) 2.41
Six amino acid changes confined to the leucine-rich repeat beta-strand/beta-turn motif determine the difference between the P and P2 rust resistance specificities in flax. Plant Cell (2001) 2.35
Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res (2002) 2.27
The arms race is ancient history in Arabidopsis, the wildflower. Nat Rev Genet (2001) 2.24
Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8. Science (2001) 2.23
Mosaic organization of orthologous sequences in grass genomes. Genome Res (2002) 2.22
The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity. Plant Cell (2002) 2.22
Arabidopsis SGT1b is required for defense signaling conferred by several downy mildew resistance genes. Plant Cell (2002) 2.18
Regions outside of the leucine-rich repeats of flax rust resistance proteins play a role in specificity determination. Plant Cell (2000) 2.17
Epigenetic variation in Arabidopsis disease resistance. Genes Dev (2002) 2.13
TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J (2002) 2.02
Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components. Plant J (2002) 1.99
Nods: a family of cytosolic proteins that regulate the host response to pathogens. Curr Opin Microbiol (2002) 1.93
The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell (1998) 1.92
Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol (2000) 1.92
Downy mildew (Peronospora parasitica) resistance genes in Arabidopsis vary in functional requirements for NDR1, EDS1, NPR1 and salicylic acid accumulation. Plant J (2000) 1.85
Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res (2002) 1.84
Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution. Mol Biol Evol (2002) 1.79
Mutational analysis of the Arabidopsis nucleotide binding site-leucine-rich repeat resistance gene RPS2. Plant Cell (2000) 1.78
Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J Mol Evol (2002) 1.77
The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp. hordei in barley and wheat. Plant J (2001) 1.76
The NOD: a signaling module that regulates apoptosis and host defense against pathogens. Oncogene (2001) 1.74
Large-scale structure-function analysis of the Arabidopsis RPM1 disease resistance protein. Plant Cell (2002) 1.72
Members of the Arabidopsis HRT/RPP8 family of resistance genes confer resistance to both viral and oomycete pathogens. Plant Cell (2000) 1.66
Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci U S A (1996) 1.64
Evidence for a role of the N terminus and leucine-rich repeat region of the Mi gene product in regulation of localized cell death. Plant Cell (2000) 1.55
Phylogeny and genomic organization of the TIR and non-tIR NBS-LRR resistance gene family in Medicago truncatula. Mol Plant Microbe Interact (2002) 1.47
Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci U S A (1996) 1.44
Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Mol Plant Microbe Interact (1998) 1.33
The isolation and mapping of disease resistance gene analogs in maize. Mol Plant Microbe Interact (1998) 1.27
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature (2013) 3.40
Plant NBS-LRR proteins: adaptable guards. Genome Biol (2006) 3.38
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics (2006) 3.10
The draft genome of sweet orange (Citrus sinensis). Nat Genet (2012) 2.81
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol (2008) 2.51
Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight. Proc Natl Acad Sci U S A (2003) 2.43
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat Genet (2012) 2.33
High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res (2006) 2.30
Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res (2002) 2.27
TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J (2002) 2.02
Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. Plant J (2005) 2.01
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell (2004) 1.94
The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana. Genetics (2004) 1.93
Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics (2005) 1.54
Diversity in conserved genes in tomato. BMC Genomics (2007) 1.52
Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. BMC Plant Biol (2007) 1.50
De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes. BMC Genomics (2012) 1.43
Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid. Plant Cell (2009) 1.41
Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa. Mol Biol Evol (2011) 1.39
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biol (2003) 1.37
Sampling nucleotide diversity in cotton. BMC Plant Biol (2009) 1.34
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. PLoS One (2011) 1.33
Dm3 is one member of a large constitutively expressed family of nucleotide binding site-leucine-rich repeat encoding genes. Mol Plant Microbe Interact (2002) 1.27
Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. Plant Cell (2007) 1.21
SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility. Theor Appl Genet (2008) 1.18
A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics (2007) 1.17
Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor Appl Genet (2009) 1.17
Dynamic nucleotide-binding site and leucine-rich repeat-encoding genes in the grass family. Plant Physiol (2012) 1.16
Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. Plant J (2007) 1.12
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am J Bot (2011) 1.11
Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions. Mol Plant Microbe Interact (2008) 1.11
Functional analyses of the Pto resistance gene family in tomato and the identification of a minor resistance determinant in a susceptible haplotype. Mol Plant Microbe Interact (2002) 1.10
Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics (2008) 1.09
Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics (2010) 1.08
Quantitative trait loci associated with seed and seedling traits in Lactuca. Theor Appl Genet (2005) 1.07
Cloning and characterization of r3b; members of the r3 superfamily of late blight resistance genes show sequence and functional divergence. Mol Plant Microbe Interact (2011) 1.04
Proteolysis of a negative regulator of innate immunity is dependent on resistance genes in tomato and Nicotiana benthamiana and induced by multiple bacterial effectors. Plant Cell (2009) 1.03
Type III secretion and effectors shape the survival and growth pattern of Pseudomonas syringae on leaf surfaces. Plant Physiol (2012) 1.02
Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon). II. Population genetics of Pto. Genetics (2006) 1.02
The genomic architecture of disease resistance in lettuce. Theor Appl Genet (2008) 1.01
P-MITE: a database for plant miniature inverted-repeat transposable elements. Nucleic Acids Res (2013) 0.99
Identification and comparison of natural rubber from two Lactuca species. Phytochemistry (2006) 0.98
Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip. PLoS One (2013) 0.97
Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce. Sci Rep (2013) 0.96
Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. BMC Plant Biol (2009) 0.95
Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.). BMC Genomics (2012) 0.94
RNAseq-based transcriptome analysis of Lactuca sativa infected by the fungal necrotroph Botrytis cinerea. Plant Cell Environ (2013) 0.94
Consequences of normalizing transcriptomic and genomic libraries of plant genomes using a duplex-specific nuclease and tetramethylammonium chloride. PLoS One (2013) 0.93
Contrasting evolutionary patterns of the Rp1 resistance gene family in different species of Poaceae. Mol Biol Evol (2010) 0.92
Arabidopsis thaliana genes encoding defense signaling and recognition proteins exhibit contrasting evolutionary dynamics. Genetics (2008) 0.92
Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J (2008) 0.92
Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic segments and major chromosomal rearrangements. Genetics (2006) 0.92
The role of TIR-NBS and TIR-X proteins in plant basal defense responses. Plant Physiol (2013) 0.91
QTLs for shelf life in lettuce co-locate with those for leaf biophysical properties but not with those for leaf developmental traits. J Exp Bot (2007) 0.91
Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiol (2009) 0.90
A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.). Theor Appl Genet (2010) 0.89
Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon). I. Functional analysis of Pto alleles. Genetics (2005) 0.89
Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae. BMC Genomics (2013) 0.89
The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2 locus. Plant J (2006) 0.88
A genetic map of the lettuce downy mildew pathogen, Bremia lactucae, constructed from molecular markers and avirulence genes. Fungal Genet Biol (2003) 0.88
The inheritance of resistance to Verticillium wilt caused by race 1 isolates of Verticillium dahliae in the lettuce cultivar La Brillante. Theor Appl Genet (2011) 0.87
Functional analysis of the plant disease resistance gene Pto using DNA shuffling. J Biol Chem (2005) 0.86
Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives. Mol Ecol Resour (2013) 0.85
Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci. Mol Plant Pathol (2009) 0.83
SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa). Genome (2003) 0.83
Hybridization between crops and wild relatives: the contribution of cultivated lettuce to the vigour of crop-wild hybrids under drought, salinity and nutrient deficiency conditions. Theor Appl Genet (2012) 0.83
Miniature inverted-repeat transposable elements (MITEs) in rice were originated and amplified predominantly after the divergence of Oryza and Brachypodium and contributed considerable diversity to the species. Mob Genet Elements (2012) 0.82
Genetic analysis of safflower domestication. BMC Plant Biol (2014) 0.81
Crop to wild introgression in lettuce: following the fate of crop genome segments in backcross populations. BMC Plant Biol (2012) 0.80
Frequent gain and loss of introns in fungal cytochrome b genes. PLoS One (2012) 0.80
Wheat rusts never sleep but neither do sequencers: will pathogenomics transform the way plant diseases are managed? Genome Biol (2015) 0.80
Quantitative trait loci associated with tipburn, heat stress-induced physiological disorders, and maturity traits in crisphead lettuce. Theor Appl Genet (2013) 0.78
The I2 resistance gene homologues in Solanum have complex evolutionary patterns and are targeted by miRNAs. BMC Genomics (2014) 0.77
Transgene-induced gene silencing is not affected by a change in ploidy level. PLoS One (2008) 0.77
Using variable rate models to identify genes under selection in sequence pairs: their validity and limitations for EST sequences. J Mol Evol (2007) 0.77
An intra-specific linkage map of lettuce (Lactuca sativa) and genetic analysis of postharvest discolouration traits. Theor Appl Genet (2013) 0.75