PubRank

Joanne Chory

Author PubWeight™ 256.07‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 2010 10.66
2 RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 2006 6.50
3 Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res 2003 6.04
4 Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell 2008 5.55
5 BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. Cell 2002 4.99
6 Signals from chloroplasts converge to regulate nuclear gene expression. Science 2007 4.99
7 The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet 2002 4.96
8 Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell 2006 4.87
9 Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis. Dev Cell 2002 4.83
10 Light signal transduction in higher plants. Annu Rev Genet 2004 4.83
11 Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. Nature 2005 4.32
12 Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev 2002 3.75
13 Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PLoS Biol 2004 3.46
14 A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 2005 3.42
15 Endosomal signaling of plant steroid receptor kinase BRI1. Genes Dev 2007 3.42
16 Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet 2008 3.35
17 Coordination of gene expression between organellar and nuclear genomes. Nat Rev Genet 2008 3.35
18 Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1). Plant Cell 2004 3.33
19 Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. Nature 2003 3.27
20 The epidermis both drives and restricts plant shoot growth. Nature 2007 3.18
21 Plastid-to-nucleus retrograde signaling. Annu Rev Plant Biol 2006 3.15
22 The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet 2006 3.11
23 Molecular mechanisms of steroid hormone signaling in plants. Annu Rev Cell Dev Biol 2005 3.07
24 Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. Plant J 2009 2.98
25 Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane. Science 2006 2.81
26 Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis. Genes Dev 2004 2.79
27 Downstream nuclear events in brassinosteroid signalling. Nature 2006 2.68
28 Regulation of flowering time by light quality. Nature 2003 2.67
29 Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A 2011 2.66
30 Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. Dev Cell 2005 2.48
31 BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis. Development 2004 2.47
32 Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc Natl Acad Sci U S A 2005 2.47
33 GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science 2003 2.47
34 Retracted Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions. Nature 2008 2.42
35 Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants. Curr Biol 2011 2.38
36 Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature 2010 2.34
37 FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics 2005 2.32
38 Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol 2011 2.31
39 PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. Plant J 2009 2.29
40 Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2007 2.29
41 Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics 2002 2.22
42 Structural basis of steroid hormone perception by the receptor kinase BRI1. Nature 2011 2.12
43 A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol 2008 2.12
44 Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway. Proc Natl Acad Sci U S A 2008 2.06
45 Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics 2004 2.00
46 Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. Proc Natl Acad Sci U S A 2008 1.91
47 Brassinosteroid signaling: a paradigm for steroid hormone signaling from the cell surface. Science 2006 1.91
48 De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis. Curr Biol 2002 1.89
49 SIR1, an upstream component in auxin signaling identified by chemical genetics. Science 2003 1.87
50 Unraveling the paradoxes of plant hormone signaling integration. Nat Struct Mol Biol 2010 1.85
51 Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor. Genes Dev 2011 1.81
52 The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. Plant Physiol 2007 1.80
53 Linking photoreceptor excitation to changes in plant architecture. Genes Dev 2012 1.80
54 Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics 2002 1.78
55 Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. Chem Biol 2009 1.73
56 Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A 2004 1.73
57 Steroid signaling in plants and insects--common themes, different pathways. Genes Dev 2002 1.68
58 Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. Proc Natl Acad Sci U S A 2009 1.68
59 A role for peroxisomes in photomorphogenesis and development of Arabidopsis. Science 2002 1.67
60 Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. Curr Biol 2005 1.65
61 Characterization of the requirements for localization of phytochrome B to nuclear bodies. Proc Natl Acad Sci U S A 2003 1.63
62 Brassinosteroids modulate the efficiency of plant immune responses to microbe-associated molecular patterns. Proc Natl Acad Sci U S A 2011 1.62
63 Brassinosteroid perception in the epidermis controls root meristem size. Development 2011 1.62
64 IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol 2009 1.59
65 Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. Proc Natl Acad Sci U S A 2008 1.58
66 Signal transduction between the chloroplast and the nucleus. Plant Cell 2002 1.53
67 Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. Plant J 2008 1.46
68 The LKA gene is a BRASSINOSTEROID INSENSITIVE 1 homolog of pea. Plant J 2003 1.45
69 Genomics tools for QTL analysis and gene discovery. Curr Opin Plant Biol 2004 1.44
70 Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. Cell 2010 1.40
71 The geminivirus nuclear shuttle protein is a virulence factor that suppresses transmembrane receptor kinase activity. Genes Dev 2004 1.39
72 Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation. Proc Natl Acad Sci U S A 2011 1.34
73 The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol 2005 1.32
74 Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proc Natl Acad Sci U S A 2008 1.30
75 Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. Development 2009 1.30
76 Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Dev Biol 2007 1.29
77 Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics 2009 1.28
78 QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One 2009 1.28
79 The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Genes Dev 2003 1.28
80 New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. Proc Natl Acad Sci U S A 2008 1.27
81 The impact of Arabidopsis on human health: diversifying our portfolio. Cell 2008 1.27
82 Growth coordination and the shoot epidermis. Curr Opin Plant Biol 2007 1.26
83 Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades. Plant J 2011 1.26
84 Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PLoS One 2011 1.25
85 BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis. Plant Cell 2007 1.23
86 A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development. Proc Natl Acad Sci U S A 2002 1.20
87 Divergent perspectives on GM food. Nat Biotechnol 2002 1.19
88 Methylation of a phosphatase specifies dephosphorylation and degradation of activated brassinosteroid receptors. Sci Signal 2011 1.17
89 Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. Proc Natl Acad Sci U S A 2013 1.16
90 Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. Plant Cell 2007 1.16
91 BRing it on: new insights into the mechanism of brassinosteroid action. J Exp Bot 2003 1.15
92 Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. Proc Natl Acad Sci U S A 2009 1.14
93 Synergism of red and blue light in the control of Arabidopsis gene expression and development. Curr Biol 2009 1.14
94 Plant receptor kinases: systemin receptor identified. Proc Natl Acad Sci U S A 2002 1.10
95 Smoke-derived karrikin perception by the α/β-hydrolase KAI2 from Arabidopsis. Proc Natl Acad Sci U S A 2013 1.09
96 The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. Plant Cell 2010 1.08
97 A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis. Plant J 2013 1.07
98 Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc Natl Acad Sci U S A 2013 1.06
99 An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development. Plant Mol Biol 2006 1.06
100 Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding. PLoS Biol 2005 1.05
101 HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression. Plant Physiol 2003 1.05
102 A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2008 1.04
103 Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway? Plant Physiol 2009 1.04
104 Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking. Cell Microbiol 2012 1.03
105 A growth regulatory loop that provides homeostasis to phytochrome a signaling. Plant Cell 2003 1.03
106 Arabidopsis brassinosteroid signaling pathway. Sci STKE 2006 1.03
107 Crosstalk in cellular signaling: background noise or the real thing? Dev Cell 2011 1.03
108 Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. Nat Chem Biol 2013 1.03
109 Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4. Nat Chem Biol 2011 1.01
110 Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. PLoS One 2007 1.00
111 Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. Plant J 2011 0.98
112 STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. Development 2010 0.98
113 Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light. Plant Cell 2005 0.96
114 Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proc Natl Acad Sci U S A 2013 0.93
115 Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway. J Cell Sci 2009 0.92
116 Tyrosine phosphorylation regulates the activity of phytochrome photoreceptors. Cell Rep 2013 0.91
117 Photomorphogenesis. Arabidopsis Book 2002 0.91
118 Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2. Dev Biol 2010 0.91
119 Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiol 2009 0.91
120 Porphyrins promote the association of GENOMES UNCOUPLED 4 and a Mg-chelatase subunit with chloroplast membranes. J Biol Chem 2009 0.88
121 Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription. Plant Physiol 2012 0.87
122 Brassinosteroid signaling pathway. Sci STKE 2006 0.87
123 Organelle signaling: how stressed chloroplasts communicate with the nucleus. Curr Biol 2012 0.84
124 The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. BMC Plant Biol 2012 0.82
125 The Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism. BMC Plant Biol 2011 0.82
126 Building integrated models of plant growth and development. Plant Physiol 2003 0.80
127 New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiol 2014 0.80
128 A toggle switch in plant nitrate uptake. Cell 2009 0.78
129 Isolation and purification of large DNA restriction fragments from agarose gels. Curr Protoc Mol Biol 2002 0.78
130 A new FronTIR in targeted protein degradation and plant development. Cell 2005 0.77
131 Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase. Anal Biochem 2011 0.76
132 Image-based analysis of light-grown seedling hypocotyls in Arabidopsis. Methods Mol Biol 2012 0.75
133 [Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding]. Med Sci (Paris) 2005 0.75
134 RNAi in transgenic plants. Curr Protoc Mol Biol 2005 0.75
135 Corrigendum: The epidermis coordinates auxin-induced stem growth in response to shade. Genes Dev 2016 0.75
136 Interview with Joanne Chory. Trends Biochem Sci 2014 0.75