Published in Bioinformatics on August 15, 2008
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J (2011) 3.16
The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. Plant Cell (2010) 1.98
Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PLoS Genet (2011) 1.79
A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo. PLoS Genet (2016) 1.42
Extensive natural epigenetic variation at a de novo originated gene. PLoS Genet (2013) 1.07
Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data. Bioinformatics (2009) 0.81
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates. BMC Bioinformatics (2013) 0.77
Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication. Bioinformatics (2009) 0.76
A review of three different studies on hidden markov models for epigenetic problems: a computational perspective. Genomics Inform (2014) 0.76
T-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data sets. BMC Genomics (2014) 0.75
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J (2011) 3.16
The MatP/matS site-specific system organizes the terminus region of the E. coli chromosome into a macrodomain. Cell (2008) 2.15
Classification and identification of Arabidopsis cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy. Plant J (2003) 1.98
VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data. Bioinformatics (2004) 1.63
Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling. PLoS Genet (2007) 1.24
Amplification biases: possible differences among deviating gene expressions. BMC Genomics (2008) 1.08
Joint segmentation, calling, and normalization of multiple CGH profiles. Biostatistics (2011) 1.08
Transcriptomic analysis of the dialogue between Pseudorabies virus and porcine epithelial cells during infection. BMC Genomics (2008) 1.05
Recovering power in association mapping panels with variable levels of linkage disequilibrium. Genetics (2014) 1.02
Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids. Plant J (2011) 0.99
Spotting effect in microarray experiments. BMC Bioinformatics (2004) 0.99
Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse. Genet Sel Evol (2013) 0.94
Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. Bioinformatics (2009) 0.93
Deciphering the connectivity structure of biological networks using MixNet. BMC Bioinformatics (2009) 0.89
Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids. Genetica (2011) 0.81
Segmentor3IsBack: an R package for the fast and exact segmentation of Seq-data. Algorithms Mol Biol (2014) 0.79
Genomic instability: a stronger prognostic marker than proliferation for early stage luminal breast carcinomas. PLoS One (2013) 0.78
Variation of gene expression associated with colonisation of an anthropized environment: comparison between African and European populations of Drosophila simulans. PLoS One (2013) 0.77
AnovArray: a set of SAS macros for the analysis of variance of gene expression data. BMC Bioinformatics (2005) 0.77
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates. BMC Bioinformatics (2013) 0.77
Unsupervised classification for tiling arrays: ChIP-chip and transcriptome. Stat Appl Genet Mol Biol (2011) 0.77
ExactDAS: an exact test procedure for the detection of differential alternative splicing in microarray experiments. Stat Appl Genet Mol Biol (2012) 0.75
Tailored aggregation for classification. IEEE Trans Pattern Anal Mach Intell (2009) 0.75
Checking homogeneity of motifs' distribution in heterogenous sequences. J Comput Biol (2005) 0.75