Published in Genetics on February 14, 2014
Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize. Genetics (2014) 0.93
Characterization of a panel of Vietnamese rice varieties using DArT and SNP markers for association mapping purposes. BMC Plant Biol (2014) 0.83
Targeted Sequencing Reveals Large-Scale Sequence Polymorphism in Maize Candidate Genes for Biomass Production and Composition. PLoS One (2015) 0.82
Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits. Heredity (Edinb) (2016) 0.80
Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biol (2016) 0.79
Prospects and limits of marker imputation in quantitative genetic studies in European elite wheat (Triticum aestivum L.). BMC Genomics (2015) 0.79
Cross-Validation Without Doing Cross-Validation in Genome-Enabled Prediction. G3 (Bethesda) (2016) 0.79
Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios. Plant Physiol (2016) 0.78
Improvement of Predictive Ability by Uniform Coverage of the Target Genetic Space. G3 (Bethesda) (2016) 0.78
Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map. Front Plant Sci (2016) 0.77
Selection for silage yield and composition did not affect genomic diversity within the Wisconsin Quality Synthetic maize population. G3 (Bethesda) (2015) 0.77
pLARmEB: integration of least angle regression with empirical Bayes for multilocus genome-wide association studies. Heredity (Edinb) (2017) 0.75
Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis. G3 (Bethesda) (2016) 0.75
The Use of Targeted Marker Subsets to Account for Population Structure and Relatedness in Genome-Wide Association Studies of Maize (Zea mays L.). G3 (Bethesda) (2016) 0.75
Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank. Theor Appl Genet (2017) 0.75
Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations. Theor Appl Genet (2017) 0.75
Optimization of multi-environment trials for genomic selection based on crop models. Theor Appl Genet (2017) 0.75
Inference of population structure using multilocus genotype data. Genetics (2000) 147.76
Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet (2006) 115.71
Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A (1973) 26.31
The transmission/disequilibrium test: history, subdivision, and admixture. Am J Hum Genet (1995) 24.52
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet (2005) 20.97
Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits. Bioinformatics (2003) 17.92
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet (2009) 17.80
Efficient methods to compute genomic predictions. J Dairy Sci (2008) 16.76
Fast model-based estimation of ancestry in unrelated individuals. Genome Res (2009) 15.63
Variance component model to account for sample structure in genome-wide association studies. Nat Genet (2010) 15.52
Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics (1990) 12.25
The Genotype-Tissue Expression (GTEx) project. Nat Genet (2013) 10.77
Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet (2001) 9.63
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
Mixed linear model approach adapted for genome-wide association studies. Nat Genet (2010) 8.47
New approaches to population stratification in genome-wide association studies. Nat Rev Genet (2010) 7.97
An Arabidopsis example of association mapping in structured samples. PLoS Genet (2006) 7.03
A first-generation haplotype map of maize. Science (2009) 6.82
Functional SNPs in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction. Nat Genet (2002) 6.46
Structure of linkage disequilibrium in plants. Annu Rev Plant Biol (2003) 5.87
Power of linkage versus association analysis of quantitative traits, by use of variance-components models, for sibship data. Am J Hum Genet (2000) 3.69
Improved heritability estimation from genome-wide SNPs. Am J Hum Genet (2012) 3.48
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Improved linear mixed models for genome-wide association studies. Nat Methods (2012) 3.09
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Comparison of mixed-model approaches for association mapping. Genetics (2008) 2.03
Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene. Genetics (2006) 1.96
Corn and humans: recombination and linkage disequilibrium in two genomes of similar size. Trends Genet (2004) 1.88
Single-nucleotide-polymorphism-based association mapping of dog stereotypes. Genetics (2008) 1.86
Using molecular markers to estimate quantitative trait locus parameters: power and genetic variances for unreplicated and replicated progeny. Genetics (1990) 1.65
Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol Genet Genomics (2007) 1.50
Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci. Genetics (2007) 1.43
Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics (2012) 1.34
Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness. Heredity (Edinb) (2011) 1.32
Recombination and speciation: loci near centromeres are more differentiated than loci near telomeres between subspecies of the European rabbit (Oryctolagus cuniculus). Genetics (2008) 1.30
Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genet (2013) 1.30
Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis. BMC Genomics (2009) 1.22
Power of a genome scan to detect and locate quantitative trait loci in cattle using dense single nucleotide polymorphisms. J Anim Breed Genet (2010) 1.01
Statistical distributions of test statistics used for quantitative trait association mapping in structured populations. Genet Sel Evol (2012) 1.01
Reduced gene flow at pericentromeric loci in a hybrid zone involving chromosomal races of the house mouse Mus musculus domesticus. Evolution (2010) 0.91
An analytic study of the power of popular quantitative-trait-locus mapping methods. Behav Genet (2008) 0.77
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Nature (2003) 5.41
The genome of Theobroma cacao. Nat Genet (2010) 3.47
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J (2011) 3.16
Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res (2004) 3.02
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
Combining quantitative trait Loci analysis and an ecophysiological model to analyze the genetic variability of the responses of maize leaf growth to temperature and water deficit. Plant Physiol (2003) 2.57
Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci U S A (2009) 2.47
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell (2010) 2.45
The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.44
BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics (2004) 2.42
Novel throughput phenotyping platforms in plant genetic studies. Trends Plant Sci (2007) 2.34
Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome. Genetics (2004) 2.33
Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana. Genome Res (2003) 2.32
Genome-based prediction of testcross values in maize. Theor Appl Genet (2011) 2.29
SNP identification in crop plants. Curr Opin Plant Biol (2009) 2.25
Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers. Genetics (2008) 2.17
Comparison of mixed-model approaches for association mapping. Genetics (2008) 2.03
Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics (2004) 2.02
Heterosis of biomass production in Arabidopsis. Establishment during early development. Plant Physiol (2004) 1.99
Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene. Genetics (2006) 1.96
The subtilisin-like serine protease SDD1 mediates cell-to-cell signaling during Arabidopsis stomatal development. Plant Cell (2002) 1.96
Brassinosteroid-regulated gene expression. Plant Physiol (2002) 1.95
Nested core collections maximizing genetic diversity in Arabidopsis thaliana. Plant J (2004) 1.88
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J (2007) 1.74
Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: possible causes and consequences for the distribution of linkage disequilibrium. Mol Ecol (2006) 1.73
Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell (2006) 1.72
Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions. Plant Physiol (2006) 1.72
Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers. Theor Appl Genet (2006) 1.71
Linkage disequilibrium in European elite maize germplasm investigated with SSRs. Theor Appl Genet (2005) 1.71
Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots". Genome Res (2005) 1.70
Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family. PLoS Comput Biol (2005) 1.67
Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc Natl Acad Sci U S A (2012) 1.61
Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers. Theor Appl Genet (2010) 1.61
Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments. G3 (Bethesda) (2012) 1.57
Brassinosteroids promote root growth in Arabidopsis. Plant Physiol (2003) 1.53
Heterosis for biomass-related traits in Arabidopsis investigated by quantitative trait loci analysis of the triple testcross design with recombinant inbred lines. Genetics (2007) 1.53
Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Res (2005) 1.50
PrBn, a major gene controlling homeologous pairing in oilseed rape (Brassica napus) haploids. Genetics (2003) 1.47
Linkage mapping of 1454 new maize candidate gene Loci. Genetics (2005) 1.47
Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.). Theor Appl Genet (2005) 1.44
A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant J (2008) 1.44
Genetic basis of heterosis for growth-related traits in Arabidopsis investigated by testcross progenies of near-isogenic lines reveals a significant role of epistasis. Genetics (2007) 1.43
Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana. Plant Cell Physiol (2005) 1.41
Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell (2010) 1.41
Segregation distortion in Arabidopsis C24/Col-0 and Col-0/C24 recombinant inbred line populations is due to reduced fertility caused by epistatic interaction of two loci. Theor Appl Genet (2006) 1.39
Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation. Sci Rep (2013) 1.38
Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays. Mol Plant Microbe Interact (2002) 1.37
MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments. BMC Bioinformatics (2007) 1.36
Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics (2008) 1.36
Quantitative trait loci mapping and the genetic basis of heterosis in maize and rice. Genetics (2008) 1.34
Intraspecific variation of recombination rate in maize. Genome Biol (2013) 1.32
Analysis of a triple testcross design with recombinant inbred lines reveals a significant role of epistasis in heterosis for biomass-related traits in Arabidopsis. Genetics (2007) 1.32
Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines. Genetics (2002) 1.31
Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids. Genetics (2006) 1.31
Using array hybridization to monitor gene expression at the single cell level. J Exp Bot (2002) 1.30
SNP mining in C. clementina BAC end sequences; transferability in the Citrus genus (Rutaceae), phylogenetic inferences and perspectives for genetic mapping. BMC Genomics (2012) 1.29
Trends in genetic diversity among European maize cultivars and their parental components during the past 50 years. Theor Appl Genet (2005) 1.29
Genomic predictability of interconnected biparental maize populations. Genetics (2013) 1.27
Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects. Theor Appl Genet (2012) 1.26
Sex-specific crossover distributions and variations in interference level along Arabidopsis thaliana chromosome 4. PLoS Genet (2007) 1.25
Application of metabolomics to plant genotype discrimination using statistics and machine learning. Bioinformatics (2002) 1.25
Dissection of the genetic basis of heterosis in an elite maize hybrid by QTL mapping in an immortalized F2 population. Theor Appl Genet (2009) 1.24
Genetic diversity analysis of elite European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals ascertainment bias for a subset of SNPs. Theor Appl Genet (2012) 1.23
Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis. BMC Genomics (2009) 1.22
Selection theory for marker-assisted backcrossing. Genetics (2005) 1.21
Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm. Theor Appl Genet (2011) 1.21
Axon fasciculation defects and retinal dysplasias in mice lacking the immunoglobulin superfamily adhesion molecule BEN/ALCAM/SC1. Mol Cell Neurosci (2004) 1.20
QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet (2010) 1.20
Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL. Plant Physiol (2011) 1.19
A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping. BMC Genomics (2012) 1.18
Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell Environ (2007) 1.17
Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.). Genome (2006) 1.15
A multi-environmental study of recent breeding progress on nitrogen use efficiency in wheat (Triticum aestivum L.). Theor Appl Genet (2013) 1.14
Haplotype sharing refines the location of an imprinted quantitative trait locus with major effect on muscle mass to a 250-kb chromosome segment containing the porcine IGF2 gene. Genetics (2003) 1.13
Identification of candidate genes associated with cell wall digestibility and eQTL (expression quantitative trait loci) analysis in a Flint x Flint maize recombinant inbred line population. BMC Genomics (2007) 1.13
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics (2014) 1.12
Gametophytic and zygotic selection leads to segregation distortion through in vivo induction of a maternal haploid in maize. J Exp Bot (2013) 1.12
BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics (2012) 1.12
Multi-trait association mapping in sugar beet (Beta vulgaris L.). Theor Appl Genet (2008) 1.12
Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant J (2009) 1.11
A high-throughput multiplex method adapted for GMO detection. J Agric Food Chem (2008) 1.11