PubRank

Scott A Shaffer

Author PubWeight™ 66.57‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Genetic basis of proteome variation in yeast. Nat Genet 2007 3.04
2 Interpolation of animal tracking data in a fluid environment. J Exp Biol 2006 2.98
3 Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biol 2007 2.68
4 Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors. Infect Immun 2006 2.18
5 Transcription factor Foxp3 and its protein partners form a complex regulatory network. Nat Immunol 2012 2.10
6 Genetic variation shapes protein networks mainly through non-transcriptional mechanisms. PLoS Biol 2011 2.08
7 LPS remodeling is an evolved survival strategy for bacteria. Proc Natl Acad Sci U S A 2012 2.05
8 Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Anal Chem 2009 1.96
9 The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. Cell 2012 1.88
10 Wind, waves, and wing loading: morphological specialization may limit range expansion of endangered albatrosses. PLoS One 2008 1.74
11 Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry. Anal Chem 2006 1.61
12 A Francisella mutant in lipid A carbohydrate modification elicits protective immunity. PLoS Pathog 2008 1.58
13 Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Anal Chem 2008 1.56
14 Heart rate and energy expenditure of incubating wandering albatrosses: basal levels, natural variation, and the effects of human disturbance. J Exp Biol 2002 1.45
15 Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Anal Chem 2008 1.44
16 Shearwater foraging in the Southern Ocean: the roles of prey availability and winds. PLoS One 2010 1.37
17 Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses. Proteomics 2008 1.23
18 xComb: a cross-linked peptide database approach to protein-protein interaction analysis. J Proteome Res 2010 1.22
19 Serine/threonine acetylation of TGFβ-activated kinase (TAK1) by Yersinia pestis YopJ inhibits innate immune signaling. Proc Natl Acad Sci U S A 2012 1.20
20 Cumulative human impacts on marine predators. Nat Commun 2013 1.19
21 Corticosterone and foraging behavior in a pelagic seabird. Physiol Biochem Zool 2007 1.19
22 Determination of pyrophosphorylated forms of lipid A in Gram-negative bacteria using a multivaried mass spectrometric approach. Proc Natl Acad Sci U S A 2008 1.18
23 Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Mol Cell Proteomics 2007 1.18
24 On the benefits of acquiring peptide fragment ions at high measured mass accuracy. J Am Soc Mass Spectrom 2008 1.17
25 Identification of the interactions between cytochrome P450 2E1 and cytochrome b5 by mass spectrometry and site-directed mutagenesis. J Biol Chem 2006 1.15
26 Precursor ion independent algorithm for top-down shotgun proteomics. J Am Soc Mass Spectrom 2009 1.14
27 Dynamic habitat models: using telemetry data to project fisheries bycatch. Proc Biol Sci 2011 1.13
28 Faster, quantitative, and accurate precursor acquisition independent from ion count. Anal Chem 2011 1.11
29 Contemporary and historical separation of transequatorial migration between genetically distinct seabird populations. Nat Commun 2011 1.11
30 Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method. Cancer Inform 2008 1.02
31 Deciphering diatom biochemical pathways via whole-cell proteomics. Aquat Microb Ecol 2009 0.98
32 Effect of age, breeding experience and senescence on corticosterone and prolactin levels in a long-lived seabird: the wandering albatross. Gen Comp Endocrinol 2006 0.96
33 New structural proteins of Halobacterium salinarum gas vesicle revealed by comparative proteomics analysis. J Proteome Res 2011 0.96
34 Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5). Biochemistry 2012 0.95
35 Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO. Brief Funct Genomic Proteomic 2006 0.93
36 Bringing home the trash: do colony-based differences in foraging distribution lead to increased plastic ingestion in Laysan albatrosses? PLoS One 2009 0.92
37 Tandem mass spectrometry investigation of ADP-ribosylated kemptide. J Am Soc Mass Spectrom 2008 0.92
38 Shotgun proteomics implicates extracellular matrix proteins and protease systems in neuronal development induced by astrocyte cholinergic stimulation. J Neurochem 2008 0.92
39 Surface acoustic wave nebulization of peptides as a microfluidic interface for mass spectrometry. Anal Chem 2010 0.89
40 Substrate specificity and ligand interactions of CYP26A1, the human liver retinoic acid hydroxylase. Mol Pharmacol 2011 0.89
41 Proteomics on Fixed Tissue Specimens - A Review. Curr Proteomics 2009 0.86
42 Automated lipid A structure assignment from hierarchical tandem mass spectrometry data. J Am Soc Mass Spectrom 2011 0.86
43 GABAergic neuroactive steroids and resting-state functional connectivity in postpartum depression: a preliminary study. J Psychiatr Res 2013 0.86
44 Identification, cloning, expression, and purification of Francisella lpp3: an immunogenic lipoprotein. Microbiol Res 2009 0.85
45 Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics. J Am Soc Mass Spectrom 2014 0.84
46 FANCJ/BACH1 acetylation at lysine 1249 regulates the DNA damage response. PLoS Genet 2012 0.84
47 Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics. Prostate 2009 0.83
48 Minimize the detection of false positives by the software program DetectShift for 18O-labeled cross-linked peptide analysis. Eur J Mass Spectrom (Chichester, Eng) 2008 0.81
49 Long-term correction of very long-chain acyl-coA dehydrogenase deficiency in mice using AAV9 gene therapy. Mol Ther 2012 0.80
50 Striatal synaptosomes from Hdh140Q/140Q knock-in mice have altered protein levels, novel sites of methionine oxidation, and excess glutamate release after stimulation. J Huntingtons Dis 2013 0.80
51 Interlaboratory studies and initiatives developing standards for proteomics. Proteomics 2013 0.79
52 Determination and comparison of the Francisella tularensis subsp.novicida U112 proteome to other bacterial proteomes. J Proteome Res 2008 0.76
53 Interacting partners of macrophage-secreted cathepsin B contribute to HIV-induced neuronal apoptosis. AIDS 2015 0.75