Published in Genetics on August 30, 2008
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A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq). G3 (Bethesda) (2013) 0.93
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A BAC-based physical map of the Nile tilapia genome. BMC Genomics (2005) 1.46
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A microsatellite linkage map of the European sea bass Dicentrarchus labrax L. Genetics (2005) 1.30
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Construction and characterization of BAC libraries for three fish species; rainbow trout, carp and tilapia. Anim Genet (2001) 1.20
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Evolution of ZZ/ZW and XX/XY sex-determination systems in the closely related medaka species, Oryzias hubbsi and O. dancena. Chromosoma (2007) 1.10
Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol Biol Evol (2006) 1.10
Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni. BMC Genomics (2007) 1.09
Non-homologous sex chromosomes in two species of the genus Eigenmannia (Teleostei: Gymnotiformes). Cytogenet Genome Res (2008) 1.08
Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs. BMC Genomics (2008) 1.08
Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications. BMC Genomics (2007) 0.98
A BAC library of the East African haplochromine cichlid fish Astatotilapia burtoni. J Exp Zool B Mol Dev Evol (2006) 0.95
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Construction of a BAC library for Haplochromis chilotes, a cichlid fish from Lake Victoria. Genes Genet Syst (2003) 0.90
Exclusion of Wilms tumour (WT1b) and ovarian cytochrome P450 aromatase (CYP19A1) as candidates for sex determination genes in Nile tilapia (Oreochromis niloticus). Anim Genet (2007) 0.89
Karyotypes of six species of african Cichlidae (Pisces: Perciformes). Experientia (1981) 0.88
Construction of bacterial artificial chromosome libraries for the Lake Malawi cichlid (Metriaclima zebra), and the blind cavefish (Astyanax mexicanus). Zebrafish (2007) 0.87
From phenotype to genotype. Evol Dev (2001) 0.85
Positive selection and gene conversion in SPP120, a fertilization-related gene, during the East African cichlid fish radiation. Mol Biol Evol (2007) 0.83
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Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res (2003) 4.19
Sympatric speciation in Nicaraguan crater lake cichlid fish. Nature (2006) 4.14
The evolutionary significance of ancient genome duplications. Nat Rev Genet (2009) 3.95
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Shape analysis of symmetric structures: quantifying variation among individuals and asymmetry. Evolution (2002) 2.99
Fast synaptic inhibition promotes synchronized gamma oscillations in hippocampal interneuron networks. Proc Natl Acad Sci U S A (2002) 2.92
Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish. J Mol Evol (2004) 2.91
The African coelacanth genome provides insights into tetrapod evolution. Nature (2013) 2.78
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
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Evidence of selection upon genomic GC-content in bacteria. PLoS Genet (2010) 2.42
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Conservation: Nicaragua Canal could wreak environmental ruin. Nature (2014) 2.33
Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas. Syst Biol (2002) 2.01
Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J Mol Evol (2006) 1.91
Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? Mol Biol Evol (2008) 1.90
The dynamics of male brooding, mating patterns, and sex roles in pipefishes and seahorses (family Syngnathidae). Evolution (2003) 1.89
Natural hybridization in primates: one evolutionary mechanism. Zoology (Jena) (2006) 1.88
Nuclear gene phylogeny of narrow-mouthed toads (Family: Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins. Mol Phylogenet Evol (2007) 1.82
Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates. Proc Natl Acad Sci U S A (2004) 1.81
Hox clusters as models for vertebrate genome evolution. Trends Genet (2005) 1.75
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Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes. Mol Ecol (2013) 1.71
The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics. Naturwissenschaften (2004) 1.67
Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends Ecol Evol (2011) 1.67
Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Mol Ecol (2013) 1.61
Plate tectonics and biogeographical patterns of the Pseudophoxinus (Pisces: Cypriniformes) species complex of central Anatolia, Turkey. Mol Phylogenet Evol (2004) 1.51
TaxI: a software tool for DNA barcoding using distance methods. Philos Trans R Soc Lond B Biol Sci (2005) 1.45
The rise and spread of a new pathogen: seroresistant Moraxella catarrhalis. Genome Res (2007) 1.40
Deciphering host migrations and origins by means of their microbes. Mol Ecol (2005) 1.39
Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake. Mol Ecol (2007) 1.37
What, if anything, is a Tilapia?-mitochondrial ND2 phylogeny of tilapiines and the evolution of parental care systems in the African cichlid fishes. Mol Biol Evol (2002) 1.32
Are all fishes ancient polyploids? J Struct Funct Genomics (2003) 1.32
A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes. Mol Phylogenet Evol (2006) 1.29
Phylogeny and comparative substitution rates of frogs inferred from sequences of three nuclear genes. Mol Biol Evol (2004) 1.28
Many genes in fish have species-specific asymmetric rates of molecular evolution. BMC Genomics (2006) 1.27
Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes). Gene (2006) 1.27
Geometric morphometric analyses provide evidence for the adaptive character of the Tanganyikan cichlid fish radiations. Evolution (2007) 1.26
Ancient lakes as evolutionary reservoirs: evidence from the thalassoid gastropods of Lake Tanganyika. Proc Biol Sci (2004) 1.24
Induction and prepatterning of the zebrafish pectoral fin bud requires axial retinoic acid signaling. Development (2006) 1.24
Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes. Gene (2002) 1.22
The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication. Int J Dev Biol (2009) 1.22
Post-mating clutch piracy in an amphibian. Nature (2004) 1.21
A novel song parameter correlates with extra-pair paternity and reflects male longevity. Proc Biol Sci (2002) 1.21
Novel evolutionary relationship among four fish model systems. Trends Genet (2004) 1.20
Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates. BMC Biol (2006) 1.16
A previously unrecognized radiation of ranid frogs in Southern Africa revealed by nuclear and mitochondrial DNA sequences. Mol Phylogenet Evol (2005) 1.15
Genetic mapping of horizontal stripes in Lake Victoria cichlid fishes: benefits and pitfalls of using RAD markers for dense linkage mapping. Mol Ecol (2014) 1.15
Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups. Mol Phylogenet Evol (2006) 1.14
Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times. BMC Biol (2010) 1.14
Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes). Brief Bioinform (2011) 1.12
Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes. BMC Biol (2007) 1.12
Color assortative mating contributes to sympatric divergence of neotropical cichlid fish. Evolution (2009) 1.11
Adaptive phenotypic plasticity in the Midas cichlid fish pharyngeal jaw and its relevance in adaptive radiation. BMC Evol Biol (2011) 1.10
Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol Biol Evol (2006) 1.10
Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni. BMC Genomics (2007) 1.09
Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes. Philos Trans R Soc Lond B Biol Sci (2010) 1.09
Molecular phylogeny and historical biogeography of the Aphanius (Pisces, Cyprinodontiformes) species complex of central Anatolia, Turkey. Mol Phylogenet Evol (2002) 1.08
Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs. BMC Genomics (2008) 1.08
Differential regulation of msx genes in the development of the gonopodium, an intromittent organ, and of the "sword," a sexually selected trait of swordtail fishes (Xiphophorus). Evol Dev (2003) 1.08
The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes? Mol Ecol (2004) 1.07
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Dual control by a single gene of secondary sexual characters and mating preferences in medaka. BMC Biol (2009) 1.04
Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes. BMC Evol Biol (2010) 1.04
Escalation and trophic specialization drive adaptive radiation of freshwater gastropods in ancient lakes on Sulawesi, Indonesia. Proc Biol Sci (2004) 1.03
Population structure of the parasitic nematode Anguillicola crassus, an invader of declining North Atlantic eel stocks. Mol Ecol (2008) 1.02
Regulatory gene networks that shape the development of adaptive phenotypic plasticity in a cichlid fish. Mol Ecol (2014) 1.00
Handed foraging behavior in scale-eating cichlid fish: its potential role in shaping morphological asymmetry. PLoS One (2012) 1.00
Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark. Proc Natl Acad Sci U S A (2008) 1.00
Comparative phylogenetic analyses of the adaptive radiation of Lake Tanganyika cichlid fish: nuclear sequences are less homoplasious but also less informative than mitochondrial DNA. J Mol Evol (2005) 0.99
Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications. BMC Genomics (2007) 0.98
Genomics of adaptation and speciation in cichlid fishes: recent advances and analyses in African and Neotropical lineages. Philos Trans R Soc Lond B Biol Sci (2012) 0.97
CEACAM3: an innate immune receptor directed against human-restricted bacterial pathogens. Int J Med Microbiol (2008) 0.97
Expression of zebrafish aldh1a3 (raldh3) and absence of aldh1a1 in teleosts. Gene Expr Patterns (2007) 0.97
Novel phylogenetic relationships of the enigmatic brevicipitine and scaphiophrynine toads as revealed by sequences from the nuclear Rag-1 gene. Proc Biol Sci (2004) 0.97
Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case. BMC Genomics (2011) 0.97
Reduced expression of vps11 causes less pigmentation in medaka, Oryzias latipes. Pigment Cell Res (2006) 0.96
Evolution of duplicated reggie genes in zebrafish and goldfish. J Mol Evol (2002) 0.96
Evolution of receptors for growth hormone and somatolactin in fish and land vertebrates: lessons from the lungfish and sturgeon orthologues. J Mol Evol (2007) 0.96
Wanda: a database of duplicated fish genes. Nucleic Acids Res (2002) 0.95
Pleistocene desiccation in East Africa bottlenecked but did not extirpate the adaptive radiation of Lake Victoria haplochromine cichlid fishes. Proc Natl Acad Sci U S A (2009) 0.95
A BAC library of the East African haplochromine cichlid fish Astatotilapia burtoni. J Exp Zool B Mol Dev Evol (2006) 0.95
Cloning of zebrafish T-box genes tbx15 and tbx18 and their expression during embryonic development. Mech Dev (2002) 0.95
Sampling genetic diversity in the sympatrically and allopatrically speciating Midas cichlid species complex over a 16 year time series. BMC Evol Biol (2007) 0.94
A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq). G3 (Bethesda) (2013) 0.93
Molecular phylogeny of Malagasy reed frogs, Heterixalus, and the relative performance of bioacoustics and color-patterns for resolving their systematics. Mol Phylogenet Evol (2007) 0.93
The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing. Mol Ecol (2013) 0.93
Trade-offs in cavefish sensory capacity. BMC Biol (2013) 0.92
2R or not 2R is not the question anymore. Nat Rev Genet (2010) 0.92
Probing integrin selectivity: rational design of highly active and selective ligands for the alpha5beta1 and alphavbeta3 integrin receptor. Angew Chem Int Ed Engl (2007) 0.92
Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua. Mol Ecol (2012) 0.91
Horizontal transfers of Tc1 elements between teleost fishes and their vertebrate parasites, lampreys. Genome Biol Evol (2012) 0.90
Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in Central Europe. Mol Ecol (2003) 0.90
Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology (Jena) (2005) 0.90
Mouth asymmetry in the textbook example of scale-eating cichlid fish is not a discrete dimorphism after all. Proc Biol Sci (2012) 0.89
Genetic, comparative genomic, and expression analyses of the Mc1r locus in the polychromatic Midas cichlid fish (Teleostei, Cichlidae Amphilophus sp.) species group. J Mol Evol (2010) 0.89