Published in Annu Rev Microbiol on January 01, 2008
Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet (2012) 2.52
The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis. PLoS Med (2009) 2.06
A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus. PLoS Pathog (2010) 2.04
Paleovirology--modern consequences of ancient viruses. PLoS Biol (2010) 1.97
Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet (2010) 1.89
Phylogeography of West Nile virus: from the cradle of evolution in Africa to Eurasia, Australia, and the Americas. J Virol (2010) 1.88
Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates. PLoS Pathog (2009) 1.85
Immunity and immunopathology to viruses: what decides the outcome? Nat Rev Immunol (2010) 1.69
Discovering the phylodynamics of RNA viruses. PLoS Comput Biol (2009) 1.63
Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach. Retrovirology (2009) 1.58
The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages. PLoS Genet (2009) 1.43
Phylogeography of dengue virus serotype 4, Brazil, 2010-2011. Emerg Infect Dis (2012) 1.41
Novel arenavirus sequences in Hylomyscus sp. and Mus (Nannomys) setulosus from Côte d'Ivoire: implications for evolution of arenaviruses in Africa. PLoS One (2011) 1.32
Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proc Natl Acad Sci U S A (2012) 1.26
The host restriction factor APOBEC3G and retroviral Vif protein coevolve due to ongoing genetic conflict. Cell Host Microbe (2012) 1.26
Worldwide spread of Dengue virus type 1. PLoS One (2013) 1.15
Toward a quantitative understanding of viral phylogeography. Curr Opin Virol (2011) 1.10
Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking. New Phytol (2013) 1.03
Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A. J Gen Virol (2011) 1.03
Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil. PLoS Negl Trop Dis (2014) 1.01
Distinct hepatitis B virus dynamics in the immunotolerant and early immunoclearance phases. J Virol (2010) 1.00
From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses. PLoS Pathog (2012) 0.99
Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts. Virol J (2009) 0.97
Virology: Bornavirus enters the genome. Nature (2010) 0.95
Hepatitis B virus infection in Latin America: a genomic medicine approach. World J Gastroenterol (2014) 0.94
Enigmatic origin of hepatitis B virus: an ancient travelling companion or a recent encounter? World J Gastroenterol (2014) 0.91
The evolution of the major hepatitis C genotypes correlates with clinical response to interferon therapy. PLoS One (2009) 0.91
Variation in RNA virus mutation rates across host cells. PLoS Pathog (2014) 0.89
Extracting transmission networks from phylogeographic data for epidemic and endemic diseases: Ebola virus in Sierra Leone, 2009 H1N1 pandemic influenza and polio in Nigeria. Int Health (2015) 0.87
The effect of genetic structure on molecular dating and tests for temporal signal. Methods Ecol Evol (2015) 0.86
Reconstruction of the evolutionary dynamics of the A(H1N1)pdm09 influenza virus in Italy during the pandemic and post-pandemic phases. PLoS One (2012) 0.86
Rooting human parechovirus evolution in time. BMC Evol Biol (2009) 0.86
A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses. Proc Biol Sci (2011) 0.85
Spatial but not temporal co-divergence of a virus and its mammalian host. Mol Ecol (2011) 0.84
Absence of frequent herpesvirus transmission in a nonhuman primate predator-prey system in the wild. J Virol (2013) 0.83
Within-host dynamics of the hepatitis C virus quasispecies population in HIV-1/HCV coinfected patients. PLoS One (2011) 0.83
HIV migration between blood and cerebrospinal fluid or semen over time. J Infect Dis (2013) 0.82
Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1. Mol Biol Evol (2015) 0.82
Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS. J Gen Virol (2014) 0.81
Occult hepatitis B virus infection in chacma baboons, South Africa. Emerg Infect Dis (2013) 0.80
The p53-microRNA-34a axis regulates cellular entry receptors for tumor-associated human herpes viruses. Med Hypotheses (2013) 0.80
The aggregate site frequency spectrum for comparative population genomic inference. Mol Ecol (2015) 0.79
Changes in diversification patterns and signatures of selection during the evolution of murinae-associated hantaviruses. Viruses (2014) 0.79
Phylogenetic analysis and victim contact tracing of rabies virus from humans and dogs in Bali, Indonesia. Epidemiol Infect (2013) 0.78
Genome-wide networks of amino acid covariances are common among viruses. J Virol (2012) 0.78
Seasonal drivers of the epidemiology of arthropod-borne viruses in Australia. PLoS Negl Trop Dis (2014) 0.78
Genetic conflicts: the usual suspects and beyond. J Exp Biol (2017) 0.77
Phylogenetic and phylodynamic analyses of human metapneumovirus in Buenos Aires (Argentina) for a three-year period (2009-2011). PLoS One (2013) 0.77
Invasion history and demographic pattern of Cryphonectria hypovirus 1 across European populations of the chestnut blight fungus. Ecol Evol (2012) 0.77
Genetic identification of cytomegaloviruses in a rural population of Côte d'Ivoire. Virol J (2015) 0.76
A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association. PLoS One (2017) 0.76
Exploring the diversity of the microbial world. Yale J Biol Med (2011) 0.75
Molecular detection of flaviviruses and alphaviruses in mosquitoes (Diptera: Culicidae) from coastal ecosystems in the Colombian Caribbean. Mem Inst Oswaldo Cruz (2016) 0.75
Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution. BMC Evol Biol (2016) 0.75
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts. PLoS Pathog (2016) 0.75
Analysis of the Molecular Evolution of Hepatitis B Virus Genotypes in Symptomatic Acute Infections in Argentina. PLoS One (2016) 0.75
Human Papillomavirus (HPV) virion induced cancer and subfertility, two sides of the same coin. Facts Views Vis Obgyn (2017) 0.75
Exploring Host-Pathogen Interactions through Biological Control. PLoS Pathog (2015) 0.75
Comparative Genomics of Amphibian-like Ranaviruses, Nucleocytoplasmic Large DNA Viruses of Poikilotherms. Evol Bioinform Online (2016) 0.75
Smallest organism; highest threat. Mater Sociomed (2012) 0.75
From Evolutionary Advantage to Disease Agents: Forensic Reevaluation of Host-Microbe Interactions and Pathogenicity. Microbiol Spectr (2017) 0.75
Role of genomic and proteomic tools in the study of host-virus interactions and virus evolution. Indian J Virol (2013) 0.75
Emergence and phylodynamics of Citrus tristeza virus in Sicily, Italy. PLoS One (2013) 0.75