Published in BMC Genomics on September 23, 2008
Derivation of induced pluripotent stem cells from pig somatic cells. Proc Natl Acad Sci U S A (2009) 2.34
Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response. BMC Genomics (2010) 1.19
Structural and functional annotation of the porcine immunome. BMC Genomics (2013) 1.16
Impact of salmonella infection on host hormone metabolism revealed by metabolomics. Infect Immun (2011) 1.12
Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits. BMC Genomics (2010) 1.09
Metabolic host responses to infection by intracellular bacterial pathogens. Front Cell Infect Microbiol (2013) 1.06
Distinct peripheral blood RNA responses to Salmonella in pigs differing in Salmonella shedding levels: intersection of IFNG, TLR and miRNA pathways. PLoS One (2011) 0.95
TFM-Explorer: mining cis-regulatory regions in genomes. Nucleic Acids Res (2010) 0.94
Global analysis of the eukaryotic pathways and networks regulated by Salmonella typhimurium in mouse intestinal infection in vivo. BMC Genomics (2010) 0.92
Transcriptomic response of porcine PBMCs to vaccination with tetanus toxoid as a model antigen. PLoS One (2013) 0.87
Time course differential gene expression in response to porcine circovirus type 2 subclinical infection. Vet Res (2009) 0.87
Differential gene expression in the pig limbal side population: implications for stem cell cycling, replication, and survival. Invest Ophthalmol Vis Sci (2009) 0.86
Eukaryotic signaling pathways targeted by Salmonella effector protein AvrA in intestinal infection in vivo. BMC Microbiol (2010) 0.86
Host transcription factors in the immediate pro-inflammatory response to the parasitic mite Psoroptes ovis. PLoS One (2011) 0.86
Transcription networks responsible for early regulation of Salmonella-induced inflammation in the jejunum of pigs. J Inflamm (Lond) (2013) 0.85
Gene expression profiling in the lungs of pigs with different susceptibilities to Glässer's disease. BMC Genomics (2010) 0.83
Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome. PLoS One (2012) 0.79
Current transcriptomics in pig immunity research. Mamm Genome (2014) 0.78
Immunogenomics for identification of disease resistance genes in pigs: a review focusing on Gram-negative bacilli. J Anim Sci Biotechnol (2012) 0.77
Pathway deregulation and expression QTLs in response to Actinobacillus pleuropneumoniae infection in swine. Mamm Genome (2014) 0.76
Pyroptosis and adaptive immunity mechanisms are promptly engendered in mesenteric lymph-nodes during pig infections with Salmonella enterica serovar Typhimurium. Vet Res (2013) 0.75
Mucosal IgA and IFN-γ(+) CD8 T cell immunity are important in the efficacy of live Salmonella enteria serovar Choleraesuis vaccines. Sci Rep (2017) 0.75
Statistical significance for genomewide studies. Proc Natl Acad Sci U S A (2003) 88.64
A network-based analysis of systemic inflammation in humans. Nature (2005) 12.60
Cytosolic flagellin requires Ipaf for activation of caspase-1 and interleukin 1beta in salmonella-infected macrophages. Nat Immunol (2006) 10.55
NF-kappa B controls expression of inhibitor I kappa B alpha: evidence for an inducible autoregulatory pathway. Science (1993) 9.03
Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res (2004) 6.31
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Apoptosis and interferons: role of interferon-stimulated genes as mediators of apoptosis. Apoptosis (2003) 3.73
Two waves of nuclear factor kappaB recruitment to target promoters. J Exp Med (2001) 3.03
Salmonella enterica serotype Choleraesuis: epidemiology, pathogenesis, clinical disease, and treatment. Clin Microbiol Rev (2004) 2.26
The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen. Nucleic Acids Res (2005) 2.21
Coordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide. Proc Natl Acad Sci U S A (2006) 1.96
A TNF-induced gene expression program under oscillatory NF-kappaB control. BMC Genomics (2005) 1.92
Phagocyte-specific calcium-binding S100 proteins as clinical laboratory markers of inflammation. Clin Chim Acta (2004) 1.87
Calprotectin (S100A8/S100A9), an inflammatory protein complex from neutrophils with a broad apoptosis-inducing activity. Biol Pharm Bull (2003) 1.84
Annotation of the Affymetrix porcine genome microarray. Anim Genet (2006) 1.78
Zinc-reversible antimicrobial activity of recombinant calprotectin (migration inhibitory factor-related proteins 8 and 14). J Infect Dis (2000) 1.76
Salmonella-induced macrophage death: the role of caspase-1 in death and inflammation. Microbes Infect (2001) 1.54
Intracellular Salmonella inhibit antigen presentation by dendritic cells. J Immunol (2005) 1.52
Predicting transcription factor binding sites using local over-representation and comparative genomics. BMC Bioinformatics (2006) 1.50
Caspase-11 gene expression in response to lipopolysaccharide and interferon-gamma requires nuclear factor-kappa B and signal transducer and activator of transcription (STAT) 1. J Biol Chem (2002) 1.49
Cytokines in host defense against Salmonella. Microbes Infect (2001) 1.48
A role for tissue transglutaminase in hepatic injury and fibrogenesis, and its regulation by NF-kappaB. Am J Physiol (1997) 1.44
Localized multigene expression patterns support an evolving Th1/Th2-like paradigm in response to infections with Toxoplasma gondii and Ascaris suum. Infect Immun (2005) 1.38
Salmonella escape from antigen presentation can be overcome by targeting bacteria to Fc gamma receptors on dendritic cells. J Immunol (2004) 1.33
Alternate routes of invasion may affect pathogenesis of Salmonella typhimurium in swine. Infect Immun (1995) 1.25
Transglutaminase 2 in inflammation. Front Biosci (2006) 1.20
Deciphering the involvement of innate immune factors in the development of the host response to PRRSV vaccination. Vet Immunol Immunopathol (2004) 1.09
Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray. Mamm Genome (2006) 1.05
Endotoxin-induced decrease in muscle protein synthesis is associated with changes in eIF2B, eIF4E, and IGF-I. Am J Physiol Endocrinol Metab (2000) 1.04
Effects of Salmonella enterica serovars Typhimurium (ST) and Choleraesuis (SC) on chemokine and cytokine expression in swine ileum and jejunal epithelial cells. Vet Immunol Immunopathol (2006) 0.99
Net replication of Salmonella enterica serovars Typhimurium and Choleraesuis in porcine intestinal mucosa and nodes is associated with their differential virulence. Infect Immun (2007) 0.98
The early transcriptional response of pig small intestinal mucosa to invasion by Salmonella enterica serovar typhimurium DT104. Mol Immunol (2006) 0.93
Neutrophil influx during non-typhoidal salmonellosis: who is in the driver's seat? FEMS Immunol Med Microbiol (2006) 0.93
Natural transmission of Salmonella choleraesuis in swine. Appl Environ Microbiol (1996) 0.93
Global transcriptional response of porcine mesenteric lymph nodes to Salmonella enterica serovar Typhimurium. Genomics (2007) 0.91
Mucosal innate immune response to intragastric infection by Salmonella enterica serovar Choleraesuis. Mol Immunol (2005) 0.89
Cytokines and synthetic double-stranded RNA augment the T helper 1 immune response of swine to porcine reproductive and respiratory syndrome virus. Vet Immunol Immunopathol (2004) 0.87
Salmonella enterica serotype Choleraesuis infections in pediatric patients. Pediatrics (2006) 0.87
Porcine differential gene expression in response to Salmonella enterica serovars Choleraesuis and Typhimurium. Mol Immunol (2007) 0.86
Enhancement of humoral and cellular immune responses by an oral Salmonella choleraesuis vaccine expressing porcine prothymosin alpha. Vaccine (2005) 0.86
Salmonella enterica serovar Choleraesuis infection of the porcine jejunal Peyer's patch rapidly induces IL-1beta and IL-8 expression. Vet Immunol Immunopathol (2005) 0.85
CXCL16 regulates cell-mediated immunity to Salmonella enterica serovar Enteritidis via promotion of gamma interferon production. Infect Immun (2006) 0.85
Gene expression of factors related to the immune reaction in response to intramammary Escherichia coli lipopolysaccharide challenge. J Dairy Res (2005) 0.85
Regulation of muscle protein synthesis in neonatal pigs during prolonged endotoxemia. Pediatr Res (2003) 0.82
Analysis of porcine differential gene expression following challenge with Salmonella enterica serovar Choleraesuis using suppression subtractive hybridization. Vet Microbiol (2005) 0.81
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study. Genetics (2009) 3.39
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci U S A (2006) 2.68
BarleyBase--an expression profiling database for plant genomics. Nucleic Acids Res (2005) 2.34
Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates. Stat Appl Genet Mol Biol (2012) 2.13
Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant J (2007) 2.11
Genomic selection of purebreds for crossbred performance. Genet Sel Evol (2009) 2.07
Dimerization allows DNA target site recognition by the NarL response regulator. Nat Struct Biol (2002) 2.05
Genomics, prior probability, and statistical tests of multiple hypotheses. Genome Res (2004) 1.96
Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation. Genet Sel Evol (2011) 1.78
Genetic regulation of gene expression during shoot development in Arabidopsis. Genetics (2005) 1.77
Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. BMC Biol (2008) 1.77
Developmental transcript profiling of cyst nematode feeding cells in soybean roots. Mol Plant Microbe Interact (2007) 1.74
Exploring the information in p-values for the analysis and planning of multiple-test experiments. Biometrics (2007) 1.71
The role of the QseC quorum-sensing sensor kinase in colonization and norepinephrine-enhanced motility of Salmonella enterica serovar Typhimurium. Microb Pathog (2007) 1.70
Linkage disequilibrium in related breeding lines of chickens. Genetics (2007) 1.66
Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science (2009) 1.65
Porcine reproductive and respiratory syndrome virus: an update on an emerging and re-emerging viral disease of swine. Virus Res (2010) 1.59
Parallel genome-wide expression profiling of host and pathogen during soybean cyst nematode infection of soybean. Mol Plant Microbe Interact (2007) 1.57
Interaction-dependent gene expression in Mla-specified response to barley powdery mildew. Plant Cell (2004) 1.56
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol (2005) 1.55
Breeding value prediction for production traits in layer chickens using pedigree or genomic relationships in a reduced animal model. Genet Sel Evol (2011) 1.55
Bovine apolipoprotein B-100 is a dominant immunogen in therapeutic cell populations cultured in fetal calf serum in mice and humans. Blood (2007) 1.52
A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics (2006) 1.51
Comparison of detection methods for Toxoplasma gondii in naturally and experimentally infected swine. Vet Parasitol (2006) 1.49
Functional genomics unique to week 20 post wounding in the deep cone/fat dome of the Duroc/Yorkshire porcine model of fibroproliferative scarring. PLoS One (2011) 1.48
Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol (2006) 1.47
Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles. Plant J (2003) 1.42
Application of the false discovery rate to quantitative trait loci interval mapping with multiple traits. Genetics (2002) 1.40
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol (2015) 1.40
Localized multigene expression patterns support an evolving Th1/Th2-like paradigm in response to infections with Toxoplasma gondii and Ascaris suum. Infect Immun (2005) 1.38
Transcriptional profiling of myostatin-knockout mice implicates Wnt signaling in postnatal skeletal muscle growth and hypertrophy. FASEB J (2006) 1.36
Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. PLoS Genet (2007) 1.35
Detection of gene orthology from gene co-expression and protein interaction networks. BMC Bioinformatics (2010) 1.32
Pooling mRNA in microarray experiments and its effect on power. Bioinformatics (2007) 1.29
Genomic selection of purebred animals for crossbred performance in the presence of dominant gene action. Genet Sel Evol (2013) 1.29
Gene mapping via bulked segregant RNA-Seq (BSR-Seq). PLoS One (2012) 1.28
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome Biol (2004) 1.27
A full-length cDNA infectious clone of North American type 1 porcine reproductive and respiratory syndrome virus: expression of green fluorescent protein in the Nsp2 region. J Virol (2006) 1.27
Ontogeny of the maize shoot apical meristem. Plant Cell (2012) 1.26
CmeR functions as a pleiotropic regulator and is required for optimal colonization of Campylobacter jejuni in vivo. J Bacteriol (2008) 1.24
Spatial analysis of arabidopsis thaliana gene expression in response to Turnip mosaic virus infection. Mol Plant Microbe Interact (2007) 1.23
Pig bone marrow-derived macrophages resemble human macrophages in their response to bacterial lipopolysaccharide. J Immunol (2012) 1.23
Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res (2012) 1.20
Persistence of accuracy of genomic estimated breeding values over generations in layer chickens. Genet Sel Evol (2011) 1.19
A gene expression atlas of the domestic pig. BMC Biol (2012) 1.18
Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiol (2007) 1.17
Structural and functional annotation of the porcine immunome. BMC Genomics (2013) 1.16
Microdissection of shoot meristem functional domains. PLoS Genet (2009) 1.15
Distinct biphasic mRNA changes in response to Asian soybean rust infection. Mol Plant Microbe Interact (2007) 1.14
The Arabidopsis microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection. Plant Physiol (2012) 1.14
Interferon induced IFIT family genes in host antiviral defense. Int J Biol Sci (2013) 1.13
Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations. BMC Genomics (2009) 1.13
Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics (2007) 1.12
Transcriptional profiling of Mycoplasma hyopneumoniae during heat shock using microarrays. Infect Immun (2006) 1.12
Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes. Bioinformatics (2006) 1.11
Interleukin-8, interleukin-1beta, and interferon-gamma levels are linked to PRRS virus clearance. Viral Immunol (2010) 1.10
Polar overdominant inheritance of a DLK1 polymorphism is associated with growth and fatness in pigs. Mamm Genome (2004) 1.09
Deciphering the involvement of innate immune factors in the development of the host response to PRRSV vaccination. Vet Immunol Immunopathol (2004) 1.09
Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in the pig. Genomics (2005) 1.09
Transcriptional responses of Pseudomonas syringae to growth in epiphytic versus apoplastic leaf sites. Proc Natl Acad Sci U S A (2013) 1.09
Combined line-cross and half-sib QTL analysis of crosses between outbred lines. Genet Res (2005) 1.08
Transcriptional profiling of Mycoplasma hyopneumoniae during iron depletion using microarrays. Microbiology (2006) 1.06
The Salmonella enterica serovar Typhimurium QseB response regulator negatively regulates bacterial motility and swine colonization in the absence of the QseC sensor kinase. Microb Pathog (2010) 1.06
Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines. Genome Biol (2007) 1.06
Whole Genome Association Studies of Residual Feed Intake and Related Traits in the Pig. PLoS One (2013) 1.06
Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray. Mamm Genome (2006) 1.05
Iron regulated genes of Salmonella enterica serovar Typhimurium in response to norepinephrine and the requirement of fepDGC for norepinephrine-enhanced growth. Microbes Infect (2008) 1.03
Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. Plant J (2008) 1.03
Soybean homologs of MPK4 negatively regulate defense responses and positively regulate growth and development. Plant Physiol (2011) 1.03
Genome-wide association and genomic prediction for host response to porcine reproductive and respiratory syndrome virus infection. Genet Sel Evol (2014) 1.02
Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis. Genetics (2004) 1.02
Immunodominant epitopes in nsp2 of porcine reproductive and respiratory syndrome virus are dispensable for replication, but play an important role in modulation of the host immune response. J Gen Virol (2009) 1.01
Stage-specific suppression of basal defense discriminates barley plants containing fast- and delayed-acting Mla powdery mildew resistance alleles. Mol Plant Microbe Interact (2006) 1.00
Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin. BMC Genomics (2010) 1.00
Sequence mining and transcript profiling to explore cyst nematode parasitism. BMC Genomics (2009) 1.00
A transcriptomic network underlies microstructural and physiological responses to cadmium in Populus x canescens. Plant Physiol (2013) 0.99
Applied animal genomics: results from the field. Annu Rev Anim Biosci (2013) 0.99
Transcript-based cloning of RRP46, a regulator of rRNA processing and R gene-independent cell death in barley-powdery mildew interactions. Plant Cell (2009) 0.97
Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency. Am J Physiol Regul Integr Comp Physiol (2009) 0.97