Published in Neuroinformatics on October 23, 2008
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics (2008) 5.38
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics (2008) 3.94
Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers. Neuroinformatics (2008) 2.39
Challenges and opportunities in mining neuroscience data. Science (2011) 2.32
Toward open sharing of task-based fMRI data: the OpenfMRI project. Front Neuroinform (2013) 2.17
Towards reproducible descriptions of neuronal network models. PLoS Comput Biol (2009) 2.11
An open annotation ontology for science on web 3.0. J Biomed Semantics (2011) 1.91
The cognitive paradigm ontology: design and application. Neuroinformatics (2012) 1.89
NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF. Neuroinformatics (2008) 1.82
Cognitive neuroscience 2.0: building a cumulative science of human brain function. Trends Cogn Sci (2010) 1.67
NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Front Neuroinform (2015) 1.58
Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework. Neuroinformatics (2008) 1.53
Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics. Neuroinformatics (2008) 1.51
Neuroscience Data Integration through Mediation: An (F)BIRN Case Study. Front Neuroinform (2010) 1.45
The central role of neuroinformatics in the National Academy of Engineering's grandest challenge: reverse engineer the brain. Neuroinformatics (2009) 1.44
The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers. Neuroinformatics (2008) 1.43
GeneWeaver: a web-based system for integrative functional genomics. Nucleic Acids Res (2011) 1.39
NeuroLex.org: an online framework for neuroscience knowledge. Front Neuroinform (2013) 1.35
Lost in localization--but found with foci?! Neuroimage (2009) 1.35
Ontologies for Neuroscience: What are they and What are they Good for? Front Neurosci (2009) 1.33
Big data from small data: data-sharing in the 'long tail' of neuroscience. Nat Neurosci (2014) 1.24
The NIF DISCO Framework: facilitating automated integration of neuroscience content on the web. Neuroinformatics (2010) 1.22
An ontological approach to describing neurons and their relationships. Front Neuroinform (2012) 1.22
The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. Neuroinformatics (2015) 1.21
The Resource Identification Initiative: A cultural shift in publishing. F1000Res (2015) 1.21
CoCoMac 2.0 and the future of tract-tracing databases. Front Neuroinform (2012) 1.17
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database (Oxford) (2012) 1.16
Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources. Front Neuroinform (2014) 1.16
Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture. Proc Natl Acad Sci U S A (2010) 1.10
A comparative antibody analysis of pannexin1 expression in four rat brain regions reveals varying subcellular localizations. Front Pharmacol (2013) 1.09
Minimal Information for Neural Electromagnetic Ontologies (MINEMO): A standards-compliant method for analysis and integration of event-related potentials (ERP) data. Stand Genomic Sci (2011) 0.97
Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox. Neuroinformatics (2009) 0.96
Spike train analysis toolkit: enabling wider application of information-theoretic techniques to neurophysiology. Neuroinformatics (2009) 0.96
Using text mining to link journal articles to neuroanatomical databases. J Comp Neurol (2012) 0.95
The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis. Front Neuroinform (2012) 0.93
Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Front Neuroinform (2011) 0.92
Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Front Neuroinform (2014) 0.92
Proteomic analysis and functional characterization of mouse brain mitochondria during aging reveal alterations in energy metabolism. Proteomics (2015) 0.91
Open source tools for the information theoretic analysis of neural data. Front Neurosci (2010) 0.90
Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics. Front Neuroanat (2011) 0.88
Integrated platform and API for electrophysiological data. Front Neuroinform (2014) 0.88
The internet brain volume database: a public resource for storage and retrieval of volumetric data. Neuroinformatics (2012) 0.87
Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One (2016) 0.87
Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. Neurotherapeutics (2012) 0.86
Approaches to neuroscience data integration. Brief Bioinform (2009) 0.86
Big data, open science and the brain: lessons learned from genomics. Front Hum Neurosci (2014) 0.85
Neuroinformatics Software Applications Supporting Electronic Data Capture, Management, and Sharing for the Neuroimaging Community. Neuropsychol Rev (2015) 0.85
Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. J Biomed Semantics (2014) 0.84
Molecular neuroanatomy: a generation of progress. Trends Neurosci (2013) 0.83
The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics (2016) 0.82
Trends in the production of scientific data analysis resources. BMC Bioinformatics (2014) 0.82
Structure-centered portal for child psychiatry research. Front Neuroinform (2014) 0.81
Aging synaptic mitochondria exhibit dynamic proteomic changes while maintaining bioenergetic function. Aging (Albany NY) (2014) 0.81
Potential translational targets revealed by linking mouse grooming behavioral phenotypes to gene expression using public databases. Prog Neuropsychopharmacol Biol Psychiatry (2012) 0.81
The promises and pitfalls of leveraging mobile health technology for pain care. Pain Med (2013) 0.81
Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. Front Neuroinform (2016) 0.81
The Resource Identification Initiative: A cultural shift in publishing. J Comp Neurol (2016) 0.80
Global Data Sharing in Alzheimer Disease Research. Alzheimer Dis Assoc Disord (2016) 0.80
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. Brief Bioinform (2011) 0.79
Modeling the autism spectrum disorder phenotype. Neuroinformatics (2014) 0.78
Reproducibility in Computational Neuroscience Models and Simulations. IEEE Trans Biomed Eng (2016) 0.78
Visualizing data mining results with the brede tools. Front Neuroinform (2009) 0.78
Statistical algorithms for ontology-based annotation of scientific literature. J Biomed Semantics (2014) 0.78
The Resource Identification Initiative: a cultural shift in publishing. Brain Behav (2015) 0.77
Can data repositories help find effective treatments for complex diseases? Submitted to Progress in neurobiology. Prog Neurobiol (2016) 0.77
Using genome-wide expression profiling to define gene networks relevant to the study of complex traits: from RNA integrity to network topology. Int Rev Neurobiol (2012) 0.77
HAFNI-enabled largescale platform for neuroimaging informatics (HELPNI). Brain Inform (2015) 0.77
Semantic framework for mapping object-oriented model to semantic web languages. Front Neuroinform (2015) 0.77
Action and language mechanisms in the brain: data, models and neuroinformatics. Neuroinformatics (2014) 0.77
MOBBED: a computational data infrastructure for handling large collections of event-rich time series datasets in MATLAB. Front Neuroinform (2013) 0.76
Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges. Front Neurosci (2016) 0.76
Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas. Brain Struct Funct (2012) 0.76
Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol. Front Behav Neurosci (2016) 0.75
SynapticDB, effective web-based management and sharing of data from serial section electron microscopy. Neuroinformatics (2011) 0.75
Biological databases for behavioral neurobiology. Int Rev Neurobiol (2012) 0.75
Data Publications Correlate with Citation Impact. Front Neurosci (2016) 0.75
SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration. Neuroimage (2015) 0.75
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions. Database (Oxford) (2016) 0.75
The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. PLoS One (2015) 0.75
Best behaviour? Ontologies and the formal description of animal behaviour. Mamm Genome (2015) 0.75
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics (2008) 5.38
WebQTL: web-based complex trait analysis. Neuroinformatics (2003) 4.10
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics (2008) 3.94
Common data model for neuroscience data and data model exchange. J Am Med Inform Assoc (2001) 3.10
Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers. Neuroinformatics (2008) 2.39
Towards effective and rewarding data sharing. Neuroinformatics (2003) 2.24
NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF. Neuroinformatics (2008) 1.82
Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework. Neuroinformatics (2008) 1.53
Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics. Neuroinformatics (2008) 1.51
The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers. Neuroinformatics (2008) 1.43
On the future of the human brain project. Neuroinformatics (2006) 1.29
The internet analysis tools registry: a public resource for image analysis. Neuroinformatics (2006) 1.28
Barriers to the socialization of information. Neuroinformatics (2004) 1.27
A gateway to the future of neuroinformatics. Neuroinformatics (2004) 1.23
Value added by data sharing: long-term potentiation of neuroscience research. A commentary on the 2007 SfN Satellite Symposium on data sharing. Neuroinformatics (2007) 1.22
Neurodatabase.org: networking the microelectrode. Nat Neurosci (2004) 1.15
Celebrating a decade of neuroscience databases: looking to the future of high-throughput data analysis, data integration, and discovery neuroscience. Neuroinformatics (2004) 1.14
Where's the beef ? Missing data in the information age. Neuroinformatics (2006) 1.14
The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci U S A (2005) 37.57
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol (2007) 35.41
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res (2005) 17.58
Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol (2004) 15.72
Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nat Genet (2005) 10.03
Computational identification of Drosophila microRNA genes. Genome Biol (2003) 9.86
The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet (2004) 9.37
Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex. Nat Rev Neurosci (2008) 8.14
Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nat Genet (2013) 8.02
Large-scale automated synthesis of human functional neuroimaging data. Nat Methods (2011) 6.94
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nat Genet (2005) 6.91
WormBase: better software, richer content. Nucleic Acids Res (2006) 6.78
Interleukin 17-producing T helper cells and interleukin 17 orchestrate autoreactive germinal center development in autoimmune BXD2 mice. Nat Immunol (2007) 6.67
ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics (2003) 6.60
A Bayesian model of shape and appearance for subcortical brain segmentation. Neuroimage (2011) 6.60
Transient and persistent dendritic spines in the neocortex in vivo. Neuron (2005) 6.30
A selective role for dopamine in stimulus-reward learning. Nature (2010) 5.57
Defining functional areas in individual human brains using resting functional connectivity MRI. Neuroimage (2008) 5.50
Immunity-related genes and gene families in Anopheles gambiae. Science (2002) 5.47
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics (2008) 5.38
WormBase: a comprehensive resource for nematode research. Nucleic Acids Res (2009) 5.20
APOBEC3B is an enzymatic source of mutation in breast cancer. Nature (2013) 5.18
Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci (2002) 5.14
A high-resolution single nucleotide polymorphism genetic map of the mouse genome. PLoS Biol (2006) 4.57
Segmentation of subcomponents within the superior longitudinal fascicle in humans: a quantitative, in vivo, DT-MRI study. Cereb Cortex (2004) 4.50
Temporally-independent functional modes of spontaneous brain activity. Proc Natl Acad Sci U S A (2012) 4.44
Localization of white matter volume increase in autism and developmental language disorder. Ann Neurol (2004) 4.40
Advancing translational research with the Semantic Web. BMC Bioinformatics (2007) 4.38
Mitonuclear protein imbalance as a conserved longevity mechanism. Nature (2013) 4.18
Genome-wide prediction of C. elegans genetic interactions. Science (2006) 4.15
WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res (2004) 4.14
E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci (2004) 4.13
WebQTL: web-based complex trait analysis. Neuroinformatics (2003) 4.10
The minimal preprocessing pipelines for the Human Connectome Project. Neuroimage (2013) 4.01
WormBase: new content and better access. Nucleic Acids Res (2006) 4.01
The nature and identification of quantitative trait loci: a community's view. Nat Rev Genet (2003) 3.96
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics (2008) 3.94
WormBase 2012: more genomes, more data, new website. Nucleic Acids Res (2011) 3.87
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. Nucleic Acids Res (2005) 3.82
Disruption of dendritic translation of CaMKIIalpha impairs stabilization of synaptic plasticity and memory consolidation. Neuron (2002) 3.78
A new set of BXD recombinant inbred lines from advanced intercross populations in mice. BMC Genet (2004) 3.74
ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci (2004) 3.71
WormBase 2007. Nucleic Acids Res (2007) 3.69
PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochim Biophys Acta (2010) 3.62
The Collaborative Cross at Oak Ridge National Laboratory: developing a powerful resource for systems genetics. Mamm Genome (2008) 3.52
Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry. Proc Natl Acad Sci U S A (2009) 3.49
A blend of small molecules regulates both mating and development in Caenorhabditis elegans. Nature (2008) 3.45
NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci (2007) 3.39
Synapse formation on neurons born in the adult hippocampus. Nat Neurosci (2007) 3.33
Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. J Neurosci (2011) 3.31
Automatic document classification of biological literature. BMC Bioinformatics (2006) 3.27
A C. elegans stretch receptor neuron revealed by a mechanosensitive TRP channel homologue. Nature (2006) 3.20
Functional organization of human intraparietal and frontal cortex for attending, looking, and pointing. J Neurosci (2003) 3.17
Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud Health Technol Inform (2005) 3.14
Individual differences in the attribution of incentive salience to reward-related cues: Implications for addiction. Neuropharmacology (2008) 3.07
Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort. Mamm Genome (2002) 3.02
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J Struct Biol (2007) 3.00
Data sharing in neuroimaging research. Front Neuroinform (2012) 2.92
Biological imaging software tools. Nat Methods (2012) 2.91
A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Comput Biol (2009) 2.88
Lensless high-resolution on-chip optofluidic microscopes for Caenorhabditis elegans and cell imaging. Proc Natl Acad Sci U S A (2008) 2.88
WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior. Nat Neurosci (2004) 2.86
The integrated response of the human cerebro-cerebellar and limbic systems to acupuncture stimulation at ST 36 as evidenced by fMRI. Neuroimage (2005) 2.86
Emerging rules for the distributions of active dendritic conductances. Nat Rev Neurosci (2002) 2.82
Evidence for ectopic neurotransmission at a neuronal synapse. Science (2005) 2.81
Optofluidic microscopy--a method for implementing a high resolution optical microscope on a chip. Lab Chip (2006) 2.80
Resting-state fMRI in the Human Connectome Project. Neuroimage (2013) 2.78
FOS-1 promotes basement-membrane removal during anchor-cell invasion in C. elegans. Cell (2005) 2.77
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics (2009) 2.74
Characterization of the "deqi" response in acupuncture. BMC Complement Altern Med (2007) 2.70
Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. Neuroimage (2013) 2.68
A C. elegans model of nicotine-dependent behavior: regulation by TRP-family channels. Cell (2006) 2.68
ALFRED: An allele frequency database for anthropology. Am J Phys Anthropol (2002) 2.67
New insights into the classification and nomenclature of cortical GABAergic interneurons. Nat Rev Neurosci (2013) 2.65
A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2009) 2.64
RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science (2009) 2.63
A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels. Neuroinformatics (2006) 2.61
An animal model of genetic vulnerability to behavioral disinhibition and responsiveness to reward-related cues: implications for addiction. Neuropsychopharmacology (2010) 2.57
An automated system for measuring parameters of nematode sinusoidal movement. BMC Genet (2005) 2.57
The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics (2003) 2.55
Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain. Biol Psychiatry (2004) 2.53