Published in PLoS One on October 31, 2008
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Detailed simulations of cell biology with Smoldyn 2.1. PLoS Comput Biol (2010) 2.72
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Diversity in times of adversity: probabilistic strategies in microbial survival games. J Theor Biol (2005) 2.55
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Overview of the Alliance for Cellular Signaling. Nature (2002) 2.15
Quantitative estimation of activity and quality for collections of functional genetic elements. Nat Methods (2013) 2.03
Environmental genomics reveals a single-species ecosystem deep within Earth. Science (2008) 1.98
Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc Natl Acad Sci U S A (2011) 1.93
RNA processing enables predictable programming of gene expression. Nat Biotechnol (2012) 1.92
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Rationally designed families of orthogonal RNA regulators of translation. Nat Chem Biol (2012) 1.66
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Regulation of transcription by unnatural amino acids. Nat Biotechnol (2011) 1.64
RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria. BMC Genomics (2013) 1.61
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Toward scalable parts families for predictable design of biological circuits. Curr Opin Microbiol (2008) 1.56
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Control of stochastic gene expression by host factors at the HIV promoter. PLoS Pathog (2009) 1.50
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Modeling and automation of sequencing-based characterization of RNA structure. Proc Natl Acad Sci U S A (2011) 1.49
Design and construction of a double inversion recombination switch for heritable sequential genetic memory. PLoS One (2008) 1.49
Deviant effects in molecular reaction pathways. Nat Biotechnol (2006) 1.48
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Complexity in bacterial cell-cell communication: quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay. Proc Natl Acad Sci U S A (2009) 1.42
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Combinatorial latency reactivation for HIV-1 subtypes and variants. J Virol (2010) 1.40
Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol (2008) 1.40
The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol (2009) 1.35
A tightly regulated inducible expression system utilizing the fim inversion recombination switch. Biotechnol Bioeng (2006) 1.35
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Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough. Appl Environ Microbiol (2007) 1.31
HIV promoter integration site primarily modulates transcriptional burst size rather than frequency. PLoS Comput Biol (2010) 1.30
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics (2011) 1.26
Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. J Bacteriol (2010) 1.25
Development of a low bias method for characterizing viral populations using next generation sequencing technology. PLoS One (2010) 1.25
The Bacillus subtilis sin operon: an evolvable network motif. Genetics (2004) 1.24
Complete genome sequence of "Enterobacter lignolyticus" SCF1. Stand Genomic Sci (2011) 1.24
Memory in microbes: quantifying history-dependent behavior in a bacterium. PLoS One (2008) 1.22
Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication. Nucleic Acids Res (2005) 1.22
A dual receptor crosstalk model of G-protein-coupled signal transduction. PLoS Comput Biol (2008) 1.20
A mechanical explanation for cytoskeletal rings and helices in bacteria. Biophys J (2007) 1.20
Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS One (2013) 1.18
Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res (2013) 1.18
How sulphate-reducing microorganisms cope with stress: lessons from systems biology. Nat Rev Microbiol (2011) 1.16
Identification of genes involved in the toxic response of Saccharomyces cerevisiae against iron and copper overload by parallel analysis of deletion mutants. Toxicol Sci (2007) 1.16
An allosteric model for transmembrane signaling in bacterial chemotaxis. J Mol Biol (2004) 1.15
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2007) 1.14
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics (2013) 1.13
A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Res (2010) 1.11
Response of Desulfovibrio vulgaris to alkaline stress. J Bacteriol (2007) 1.11
Fifteen minutes of fim: control of type 1 pili expression in E. coli. OMICS (2002) 1.10
A latent variable model for chemogenomic profiling. Bioinformatics (2005) 1.10
OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments. BMC Bioinformatics (2006) 1.10
Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Appl Environ Microbiol (2009) 1.10
Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals. Nucleic Acids Res (2012) 1.08
Varying virulence: epigenetic control of expression noise and disease processes. Trends Biotechnol (2011) 1.07
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. Nucleic Acids Res (2012) 1.06
Engineering robust control of two-component system phosphotransfer using modular scaffolds. Proc Natl Acad Sci U S A (2012) 1.04
Global analysis of host response to induction of a latent bacteriophage. BMC Microbiol (2007) 1.03
Phosphatase localization in bacterial chemotaxis: divergent mechanisms, convergent principles. Phys Biol (2005) 1.02
Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp. Appl Environ Microbiol (2012) 1.01
Snapshot of iron response in Shewanella oneidensis by gene network reconstruction. BMC Genomics (2009) 1.01
Transcript level and sequence determinants of protein abundance and noise in Escherichia coli. Nucleic Acids Res (2014) 0.99