Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals.

PubWeight™: 1.15‹?› | Rank: Top 10%

🔗 View Article (PMID 18987984)

Published in Chromosome Res on November 08, 2008

Authors

Janine E Deakin1, Edda Koina, Paul D Waters, Ruth Doherty, Vidushi S Patel, Margaret L Delbridge, Bianca Dobson, James Fong, Yanqiu Hu, Cecilia van den Hurk, Andrew J Pask, Geoff Shaw, Carly Smith, Katherine Thompson, Matthew J Wakefield, Hongshi Yu, Marilyn B Renfree, Jennifer A Marshall Graves

Author Affiliations

1: ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 0200, Australia. Janine.Deakin@anu.edu.au

Articles citing this

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol (2011) 2.18

Evolution of vertebrate interferon inducible transmembrane proteins. BMC Genomics (2012) 1.44

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour. PLoS Genet (2012) 1.12

MHC-linked and un-linked class I genes in the wallaby. BMC Genomics (2009) 1.04

Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals. PLoS One (2011) 1.01

Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic. Genome Biol (2010) 1.00

Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes. Chromosome Res (2009) 0.99

Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years. Chromosome Res (2009) 0.98

Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica. Genome Res (2013) 0.97

Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution. Genome Res (2011) 0.90

Deep ancestry of mammalian X chromosome revealed by comparison with the basal tetrapod Xenopus tropicalis. BMC Genomics (2012) 0.84

Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28. Genome Res (2009) 0.84

A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation. Chromosoma (2011) 0.83

A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map. BMC Genomics (2011) 0.83

No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes. PLoS One (2012) 0.82

In vivo function and evolution of the eutherian-specific pluripotency marker UTF1. PLoS One (2013) 0.81

Reconstruction of the ancestral marsupial karyotype from comparative gene maps. BMC Evol Biol (2013) 0.80

Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage. BMC Genomics (2015) 0.79

Paternal X inactivation does not correlate with X chromosome evolutionary strata in marsupials. BMC Evol Biol (2014) 0.79

Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC. PLoS One (2014) 0.79

Differential roles of TGIF family genes in mammalian reproduction. BMC Dev Biol (2011) 0.79

Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome. BMC Genomics (2016) 0.79

Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries. J Biomed Biotechnol (2010) 0.78

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii). BMC Genet (2011) 0.78

Tracing the evolution of amniote chromosomes. Chromosoma (2014) 0.78

Globin gene structure in a reptile supports the transpositional model for amniote α- and β-globin gene evolution. Chromosome Res (2010) 0.76

Marsupial genome sequences: providing insight into evolution and disease. Scientifica (Cairo) (2012) 0.76

Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease. Chromosoma (2016) 0.75

Articles cited by this

The delayed rise of present-day mammals. Nature (2007) 15.98

X-inactivation profile reveals extensive variability in X-linked gene expression in females. Nature (2005) 12.06

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91

Genome analysis of the platypus reveals unique signatures of evolution. Nature (2008) 5.74

Dosage compensation in mammals: fine-tuning the expression of the X chromosome. Genes Dev (2006) 4.17

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Science (2006) 3.50

Localization of the X inactivation centre on the human X chromosome in Xq13. Nature (1991) 2.48

The origin and function of the mammalian Y chromosome and Y-borne genes--an evolving understanding. Bioessays (1995) 2.38

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res (2008) 2.30

The evolution of tribospheny and the antiquity of mammalian clades. Mol Phylogenet Evol (2003) 2.19

Comparative painting reveals strong chromosome homology over 80 million years of bird evolution. Chromosome Res (1999) 1.80

Late DNA replication in the paternally derived X chromosome of female kangaroos. Nature (1971) 1.48

Wide genome comparisons reveal the origins of the human X chromosome. Trends Genet (2004) 1.39

An SRY-related sequence on the marsupial X chromosome: implications for the evolution of the mammalian testis-determining gene. Proc Natl Acad Sci U S A (1994) 1.38

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals. Chromosome Res (2007) 1.27

Sequences homologous to ZFY, a candidate human sex-determining gene, are autosomal in marsupials. Nature (1989) 1.25

Comparative mapping identifies the fusion point of an ancient mammalian X-autosomal rearrangement. Genomics (1996) 1.23

The evolution of imprinting: chromosomal mapping of orthologues of mammalian imprinted domains in monotreme and marsupial mammals. BMC Evol Biol (2007) 1.19

Recent assembly of an imprinted domain from non-imprinted components. PLoS Genet (2006) 1.17

Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby). Chromosome Res (2005) 1.14

Reversal and convergence in marsupial chromosome evolution. Cytogenet Genome Res (2003) 1.08

The kangaroo genome. Leaps and bounds in comparative genomics. EMBO Rep (2003) 1.08

Genes flanking Xist in mouse and human are separated on the X chromosome in American marsupials. Chromosome Res (2007) 1.07

The search for a marsupial XIC reveals a break with vertebrate synteny. Chromosome Res (2007) 1.06

Mammalian X chromosome inactivation: testing the hypothesis of transcriptional control. Somat Cell Mol Genet (1986) 1.00

G-banding evidence for a conserved complement in the Marsupialia. Cytogenet Cell Genet (1985) 0.97

The X chromosome of marsupials shares a highly conserved region with eutherians. Genomics (1991) 0.97

7E olfactory receptor gene clusters and evolutionary chromosome rearrangements. Cytogenet Genome Res (2006) 0.95

Class I genes have split from the MHC in the tammar wallaby. Cytogenet Genome Res (2007) 0.94

The human sex-reversing ATRX gene has a homologue on the marsupial Y chromosome, ATRY: implications for the evolution of mammalian sex determination. Proc Natl Acad Sci U S A (2000) 0.90

The androgen receptor gene is located on a highly conserved region of the X chromosomes of marsupial and monotreme as well as eutherian mammals. J Hered (1991) 0.89

Cone visual pigments of monotremes: filling the phylogenetic gap. Vis Neurosci (2008) 0.89

Genes on the short arm of the human X chromosome are not shared with the marsupial X. Genomics (1991) 0.89

A two step model for mammalian X-chromosome inactivation. Prog Clin Biol Res (1985) 0.87

Karyotype evolution of marsupials: from higher to lower diploid numbers. Cytogenet Cell Genet (1998) 0.86

A eutherian X-linked gene, PDHA1, is autosomal in marsupials: a model for the evolution of a second, testis-specific variant in eutherian mammals. Genomics (1993) 0.86

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals. Chromosome Res (2005) 0.86

Integrated cytogenetic BAC map of the genome of the gray, short-tailed opossum, Monodelphis domestica. Chromosome Res (2007) 0.86

Differential expression of WNT4 in testicular and ovarian development in a marsupial. BMC Dev Biol (2006) 0.85

Origin and evolution of candidate mental retardation genes on the human X chromosome (MRX). BMC Genomics (2008) 0.82

CSF2RA, ANT3, and STS are autosomal in marsupials: implications for the origin of the pseudoautosomal region of mammalian sex chromosomes. Mamm Genome (1998) 0.82

The candidate sex-reversing DAX1 gene is autosomal in marsupials: implications for the evolution of sex determination in mammals. Genomics (1997) 0.81

Chromosome painting in marsupials: genome conservation in the kangaroo family. Chromosome Res (1999) 0.80

Assignment of the SMARCF1 gene to tammar wallaby chromosome 5q by fluorescence in situ hybridisation. Cytogenet Cell Genet (2001) 0.79

Autosomal localization of the amelogenin gene in monotremes and marsupials: implications for mammalian sex chromosome evolution. Genomics (1992) 0.79

Assignment of the glucose-6-phosphate dehydrogenase (G6PD) gene to tammar wallaby chromosome Xq by fluorescence in situ hybridization with a BAC clone. Cytogenet Genome Res (2005) 0.77

Marsupial--mouse cell hybrids containing fragments of the marsupial X chromosome. Somatic Cell Genet (1979) 0.75

Assignment of the eukaryotic translation initiation factor (EIF2S3) to tammar wallaby chromosome 5p by in situ hybridization. Cytogenet Genome Res (2004) 0.75

Assignment of the thymosin beta 4 X/Y chromosome (TMSB4X/Y) gene to tammar wallaby chromosome 5p by fluorescence in situ hybridisation. Cytogenet Genome Res (2003) 0.75

Assignment of the proteolipid protein 1 gene (PLP1) to tammar wallaby chromosome Xq by fluorescence in situ hybridization with a BAC clone. Cytogenet Genome Res (2006) 0.75

Articles by these authors

PyCogent: a toolkit for making sense from sequence. Genome Biol (2007) 20.64

Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol (2010) 9.15

Transcript length bias in RNA-seq data confounds systems biology. Biol Direct (2009) 8.53

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91

Genome analysis of the platypus reveals unique signatures of evolution. Nature (2008) 5.74

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res (2008) 2.30

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. Nucleic Acids Res (2011) 2.23

Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians. Nat Genet (2008) 2.20

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol (2011) 2.18

Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. PLoS Biol (2006) 2.17

Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor. Cancer Discov (2013) 2.11

The evolution of the DLK1-DIO3 imprinted domain in mammals. PLoS Biol (2008) 2.05

Discovery, synthesis, and in vivo activity of a new class of pyrazoloquinazolines as selective inhibitors of aurora B kinase. J Med Chem (2007) 1.81

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res (2007) 1.79

PyEvolve: a toolkit for statistical modelling of molecular evolution. BMC Bioinformatics (2004) 1.75

Temperature sex reversal implies sex gene dosage in a reptile. Science (2007) 1.73

Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting. PLoS Genet (2007) 1.70

Mechanisms that determine the internal environment of the developing brain: a transcriptomic, functional and ultrastructural approach. PLoS One (2013) 1.64

Conservation of small RNA pathways in platypus. Genome Res (2008) 1.51

The impact of inadequately controlled asthma in urban children on quality of life and productivity. Ann Allergy Asthma Immunol (2007) 1.45

Evolution of vertebrate interferon inducible transmembrane proteins. BMC Genomics (2012) 1.44

Evolution of genomic imprinting: insights from marsupials and monotremes. Annu Rev Genomics Hum Genet (2009) 1.40

Urinary incontinence after treatment for prostate cancer. BMJ (2011) 1.38

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals. Chromosome Res (2007) 1.27

5alpha-androstane-3alpha,17beta-diol is formed in tammar wallaby pouch young testes by a pathway involving 5alpha-pregnane-3alpha,17alpha-diol-20-one as a key intermediate. Endocrinology (2003) 1.24

Genomic imprinting of IGF2, p57(KIP2) and PEG1/MEST in a marsupial, the tammar wallaby. Mech Dev (2005) 1.24

Rates of genome evolution and branching order from whole genome analysis. Mol Biol Evol (2007) 1.21

The status of dosage compensation in the multiple X chromosomes of the platypus. PLoS Genet (2008) 1.20

The evolution of imprinting: chromosomal mapping of orthologues of mammalian imprinted domains in monotreme and marsupial mammals. BMC Evol Biol (2007) 1.19

Construction and evolution of imprinted loci in mammals. Trends Genet (2007) 1.19

Recent assembly of an imprinted domain from non-imprinted components. PLoS Genet (2006) 1.17

Comparative and functional analyses of LYL1 loci establish marsupial sequences as a model for phylogenetic footprinting. Genomics (2003) 1.17

Maternal regulation of milk composition, milk production, and pouch young development during lactation in the tammar wallaby (Macropus eugenii ). Biol Reprod (2003) 1.15

Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby). Chromosome Res (2005) 1.14

Chris Deery: 'The Hall technique will revolutionise children's dentistry'. Br Dent J (2014) 1.13

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour. PLoS Genet (2012) 1.12

RegA, an AraC-like protein, is a global transcriptional regulator that controls virulence gene expression in Citrobacter rodentium. Infect Immun (2008) 1.11

Ozone, heat and mortality: acute effects in 15 British conurbations. Occup Environ Med (2010) 1.11

The marsupial placenta: a phylogenetic analysis. J Exp Zool A Comp Exp Biol (2003) 1.11

Exceptionally high conservation of the MHC class I-related gene, MR1, among mammals. Immunogenetics (2012) 1.10

How the gene content of human sex chromosomes evolved. Curr Opin Genet Dev (2006) 1.10

Molecular marker suggests rapid changes of sex-determining mechanisms in Australian dragon lizards. Chromosome Res (2009) 1.10

Sex determination: Birds do it with a Z gene. Nature (2009) 1.09

Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation. Nature (2012) 1.08

The kangaroo genome. Leaps and bounds in comparative genomics. EMBO Rep (2003) 1.08

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation. Epigenetics Chromatin (2013) 1.06

Gene structure, multiple alternative splicing, and expression in gonads of zebrafish Dmrt1. Biochem Biophys Res Commun (2005) 1.05

Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution. Genome Res (2013) 1.05

The mammalian yolk sac placenta. J Exp Zool B Mol Dev Evol (2009) 1.05

Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): implications for mammalian sex chromosome evolution. Chromosome Res (2005) 1.03

Discovery of novel and potent thiazoloquinazolines as selective Aurora A and B kinase inhibitors. J Med Chem (2006) 1.02

The molecular characteristics of polycystic ovary syndrome (PCOS) ovary defined by human ovary cDNA microarray. J Mol Endocrinol (2004) 1.02

Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals. PLoS One (2011) 1.01

An XX/XY sex microchromosome system in a freshwater turtle, Chelodina longicollis (Testudines: Chelidae) with genetic sex determination. Chromosome Res (2006) 1.01

Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic. Genome Biol (2010) 1.00

The evolution of class V POU domain transcription factors in vertebrates and their characterisation in a marsupial. Dev Biol (2009) 1.00

Analysis of the platypus genome suggests a transposon origin for mammalian imprinting. Genome Biol (2009) 1.00

Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years. Chromosome Res (2009) 0.98

The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence, spectral tuning, and evolution. Mol Biol Evol (2003) 0.98

Specific patterns of histone marks accompany X chromosome inactivation in a marsupial. Chromosome Res (2009) 0.97

A platypus' eye view of the mammalian genome. Curr Opin Genet Dev (2004) 0.97

Heathrow to ICU direct. N Z Med J (2005) 0.97

Ancient antimicrobial peptides kill antibiotic-resistant pathogens: Australian mammals provide new options. PLoS One (2011) 0.96

CCN2 expression by fibroblasts is not required for cutaneous tissue repair. Wound Repair Regen (2014) 0.96

Genomic imprinting in marsupial placentation. Reproduction (2008) 0.96

Complex events in the evolution of the human pseudoautosomal region 2 (PAR2). Genome Res (2003) 0.96

Evolution of coding and non-coding genes in HOX clusters of a marsupial. BMC Genomics (2012) 0.95