PubRank

Carsten Wiuf

Author PubWeight™ 91.54‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Res 2006 4.70
2 Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science 2003 4.48
3 Diagnostic and prognostic microRNAs in stage II colon cancer. Cancer Res 2008 4.20
4 Subnets of scale-free networks are not scale-free: sampling properties of networks. Proc Natl Acad Sci U S A 2005 3.75
5 Estimating the size of the human interactome. Proc Natl Acad Sci U S A 2008 3.66
6 Monitoring endangered freshwater biodiversity using environmental DNA. Mol Ecol 2011 3.45
7 Identification of endogenous retroviral reading frames in the human genome. Retrovirology 2004 2.58
8 Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics 2005 2.21
9 Common variants at VRK2 and TCF4 conferring risk of schizophrenia. Hum Mol Genet 2011 2.21
10 Frequent occurrence of uniparental disomy in colorectal cancer. Carcinogenesis 2006 1.99
11 Model criticism based on likelihood-free inference, with an application to protein network evolution. Proc Natl Acad Sci U S A 2009 1.89
12 Long-term persistence of bacterial DNA. Curr Biol 2004 1.70
13 SOX4 expression in bladder carcinoma: clinical aspects and in vitro functional characterization. Cancer Res 2006 1.66
14 A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays. BMC Bioinformatics 2007 1.65
15 Comprehensive genome methylation analysis in bladder cancer: identification and validation of novel methylated genes and application of these as urinary tumor markers. Clin Cancer Res 2011 1.46
16 Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments. Genetics 2006 1.44
17 The effects of incomplete protein interaction data on structural and evolutionary inferences. BMC Biol 2006 1.36
18 High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors. Cancer Res 2005 1.34
19 Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer. Cancer Res 2011 1.33
20 Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comput Biol 2007 1.33
21 Genotyping and annotation of Affymetrix SNP arrays. Nucleic Acids Res 2006 1.31
22 Simulating haplotype blocks in the human genome. Bioinformatics 2003 1.31
23 Ab initio identification of human microRNAs based on structure motifs. BMC Bioinformatics 2007 1.27
24 Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors. Clin Cancer Res 2005 1.25
25 An algebraic approach to signaling cascades with N layers. Bull Math Biol 2011 1.23
26 Genome-wide scans using archived neonatal dried blood spot samples. BMC Genomics 2009 1.20
27 Estimation of tumor heterogeneity using CGH array data. BMC Bioinformatics 2009 1.14
28 Importance sampling for the infinite sites model. Stat Appl Genet Mol Biol 2008 1.13
29 Enzyme-sharing as a cause of multi-stationarity in signalling systems. J R Soc Interface 2011 1.12
30 Sampling properties of random graphs: the degree distribution. Phys Rev E Stat Nonlin Soft Matter Phys 2005 1.11
31 Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps. J Biomed Inform 2006 1.07
32 Evolution at the system level: the natural history of protein interaction networks. Trends Ecol Evol 2007 1.07
33 Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM. BMC Cancer 2009 1.06
34 Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer. PLoS One 2008 1.04
35 Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck. Radiother Oncol 2011 1.02
36 A bimodular mechanism of calcium control in eukaryotes. Nature 2012 1.02
37 Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution. Clin Cancer Res 2008 1.01
38 Variable elimination in post-translational modification reaction networks with mass-action kinetics. J Math Biol 2012 1.00
39 Simplifying biochemical models with intermediate species. J R Soc Interface 2013 0.99
40 Tumor heterogeneity in neoplasms of breast, colon, and skin. BMC Res Notes 2010 0.97
41 The association between genetic variants in hMLH1 and hMSH2 and the development of sporadic colorectal cancer in the Danish population. BMC Med Genet 2008 0.97
42 Cellular compartments cause multistability and allow cells to process more information. Biophys J 2013 0.97
43 Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis. Proteomics 2008 0.95
44 Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis. BMC Genomics 2011 0.94
45 The genealogy, site frequency spectrum and ages of two nested mutant alleles. Theor Popul Biol 2009 0.91
46 Short tandem repeats in human exons: a target for disease mutations. BMC Genomics 2008 0.90
47 Phosphorelays provide tunable signal processing capabilities for the cell. PLoS Comput Biol 2013 0.90
48 Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells. BMC Med Genomics 2008 0.89
49 Modelling the contribution of family history and variation in single nucleotide polymorphisms to risk of schizophrenia: a Danish national birth cohort-based study. Schizophr Res 2011 0.87
50 A computational method to preclude multistationarity in networks of interacting species. Bioinformatics 2013 0.86
51 Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models. J Theor Biol 2012 0.85
52 The CATH database. Hum Genomics 2010 0.84
53 A beta-mixture model for dimensionality reduction, sample classification and analysis. BMC Bioinformatics 2011 0.84
54 From evidence to inference: probing the evolution of protein interaction networks. HFSP J 2009 0.84
55 A review of software for microarray genotyping. Hum Genomics 2011 0.83
56 High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer. Cancer Epidemiol Biomarkers Prev 2010 0.81
57 Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer. BMC Cancer 2009 0.80
58 DNA copy number aberrations in breast cancer by array comparative genomic hybridization. Genomics Proteomics Bioinformatics 2009 0.80
59 A periodic pattern of SNPs in the human genome. Genome Res 2007 0.80
60 Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB. Mol Biosyst 2015 0.79
61 An Algebro-topological description of protein domain structure. PLoS One 2011 0.79
62 Conflicting results in SNP genotype assessment. Biotechniques 2007 0.78
63 Temporal development and collapse of an Arctic plant-pollinator network. BMC Ecol 2009 0.78
64 Signaling cascades: consequences of varying substrate and phosphatase levels. Adv Exp Med Biol 2012 0.78
65 Incomplete and noisy network data as a percolation process. J R Soc Interface 2010 0.77
66 Short tandem repeats and genetic variation. Methods Mol Biol 2010 0.77
67 Evaluating Neanderthal genetics and phylogeny. J Mol Evol 2006 0.77
68 Bioinformatic identification of FGF, p38-MAPK, and calcium signalling pathways associated with carcinoma in situ in the urinary bladder. BMC Cancer 2008 0.75
69 SNPTools: a software tool for visualization and analysis of microarray data. Bioinformatics 2007 0.75
70 Rseg--an R package to optimize segmentation of SNP array data. Bioinformatics 2010 0.75
71 LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping. Stat Appl Genet Mol Biol 2016 0.75
72 Convergence properties of the degree distribution of some growing network models. Bull Math Biol 2006 0.75