Published in Methods Mol Biol on January 01, 2008
Detection of bacteria using fluorogenic DNAzymes. J Vis Exp (2012) 0.85
Structure-switching signaling aptamers. J Am Chem Soc (2003) 2.22
Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem Biol (2004) 2.06
Biologically inspired synthetic enzymes made from DNA. Chem Biol (2009) 1.92
In vitro selection of structure-switching signaling aptamers. Angew Chem Int Ed Engl (2005) 1.83
Nucleic acid aptamers and enzymes as sensors. Curr Opin Chem Biol (2006) 1.60
Design of gold nanoparticle-based colorimetric biosensing assays. Chembiochem (2008) 1.56
Rolling circle amplification: applications in nanotechnology and biodetection with functional nucleic acids. Angew Chem Int Ed Engl (2008) 1.35
Aptamers with fluorescence-signaling properties. Methods (2005) 1.32
Paper-based bioassays using gold nanoparticle colorimetric probes. Anal Chem (2008) 1.24
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling. J Am Chem Soc (2003) 1.23
A synthetic luxCDABE gene cluster optimized for expression in high-GC bacteria. Nucleic Acids Res (2007) 1.13
Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes. Chem Biol (2002) 1.11
Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences. J Am Chem Soc (2003) 1.10
Structure-switching signaling aptamers: transducing molecular recognition into fluorescence signaling. Chemistry (2004) 1.08
Protein repellant silicone surfaces by covalent immobilization of poly(ethylene oxide). Biomaterials (2005) 1.05
Fluorogenic DNAzyme probes as bacterial indicators. Angew Chem Int Ed Engl (2011) 1.04
Making AppDNA using T4 DNA ligase. Bioorg Chem (2002) 1.04
Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection. Biochemistry (2004) 1.03
Diverse evolutionary trajectories characterize a community of RNA-cleaving deoxyribozymes: a case study into the population dynamics of in vitro selection. J Mol Evol (2005) 1.02
Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures. Anal Chem (2003) 1.01
A versatile endoribonuclease mimic made of DNA: characteristics and applications of the 8-17 RNA-cleaving DNAzyme. Chembiochem (2010) 1.01
Ligating DNA with DNA. J Am Chem Soc (2004) 1.01
A FACS-based approach to engineering artificial riboswitches. Chembiochem (2008) 1.00
Simple and rapid colorimetric biosensors based on DNA aptamer and noncrosslinking gold nanoparticle aggregation. Chembiochem (2007) 1.00
DNA aptamer folding on gold nanoparticles: from colloid chemistry to biosensors. J Am Chem Soc (2008) 0.98
Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme. Nucleic Acids Res (2008) 0.96
Quenching of fluorophore-labeled DNA oligonucleotides by divalent metal ions: implications for selection, design, and applications of signaling aptamers and signaling deoxyribozymes. J Am Chem Soc (2006) 0.96
Biotinylation of TiO(2) nanoparticles and their conjugation with streptavidin. Langmuir (2007) 0.94
Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates. Nucleic Acids Res (2006) 0.93
DNA polymerization on gold nanoparticles through rolling circle amplification: towards novel scaffolds for three-dimensional periodic nanoassemblies. Angew Chem Int Ed Engl (2006) 0.93
Detection of DNA using bioactive paper strips. Chem Commun (Camb) (2009) 0.92
Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design. PLoS One (2007) 0.92
In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine-pyrimidine junctions. Nucleic Acids Res (2008) 0.92
Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in E. coli. Chem Biol (2010) 0.92
Multiplexed paper test strip for quantitative bacterial detection. Anal Bioanal Chem (2012) 0.90
Catalysis and rational engineering of trans-acting pH6DZ1, an RNA-cleaving and fluorescence-signaling deoxyribozyme with a four-way junction structure. Chembiochem (2006) 0.90
Translating bacterial detection by DNAzymes into a litmus test. Angew Chem Int Ed Engl (2014) 0.89
Enzymatic cleavage of nucleic acids on gold nanoparticles: a generic platform for facile colorimetric biosensors. Small (2008) 0.89
Revitalization of six abandoned catalytic DNA species reveals a common three-way junction framework and diverse catalytic cores. J Mol Biol (2006) 0.89
Characterizing the secondary structure and identifying functionally essential nucleotides of pH6DZ1, a fluorescence-signaling and RNA-cleaving deoxyribozyme. Biochemistry (2005) 0.88
Evolution of high-branching deoxyribozymes from a catalytic DNA with a three-way junction. Chem Biol (2006) 0.88
Colorimetric sensing by using allosteric-DNAzyme-coupled rolling circle amplification and a peptide nucleic acid-organic dye probe. Angew Chem Int Ed Engl (2009) 0.87
Secondary-structure characterization of two proficient kinase deoxyribozymes. Biochemistry (2005) 0.87
Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme. Nucleic Acids Res (2006) 0.87
Characterization of an RNA-cleaving deoxyribozyme with optimal activity at pH 5. Biochemistry (2009) 0.86
A deoxyribozyme with a novel guanine quartet-helix pseudoknot structure. J Mol Biol (2007) 0.86
A genotype-to-phenotype map of in vitro selected RNA-cleaving DNAzymes: implications for accessing the target phenotype. Nucleic Acids Res (2009) 0.86
Entrapment of fluorescence signaling DNA enzymes in sol-gel-derived materials for metal ion sensing. Anal Chem (2007) 0.86
Detection of bacteria using fluorogenic DNAzymes. J Vis Exp (2012) 0.85
Inhibitor screening using immobilized enzyme reactor chromatography/mass spectrometry. Anal Chem (2005) 0.85
DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides. Nucleic Acids Res (2008) 0.85
Multiple occurrences of an efficient self-phosphorylating deoxyribozyme motif. Biochemistry (2007) 0.84
A general approach to the construction of structure-switching reporters from RNA aptamers. Angew Chem Int Ed Engl (2010) 0.84
Immobilization of bacteriophages on modified silica particles. Biomaterials (2009) 0.84
Investigation of DNA as a catalyst for Henry reaction in water. Chem Commun (Camb) (2008) 0.84
Amphiphilic silicone architectures via anaerobic thiol-ene chemistry. Org Lett (2011) 0.84
The structural diversity of deoxyribozymes. Molecules (2010) 0.84
Tripartite molecular beacons. Nucleic Acids Res (2002) 0.84
Silicone elastomers for reduced protein adsorption. Biomaterials (2004) 0.84
Turning a kinase deoxyribozyme into a sensor. J Am Chem Soc (2013) 0.84
Simple and rapid colorimetric enzyme sensing assays using non-crosslinking gold nanoparticle aggregation. Chem Commun (Camb) (2007) 0.84
Adsorption and covalent coupling of ATP-binding DNA aptamers onto cellulose. Langmuir (2007) 0.83
Probing the function of nucleotides in the catalytic cores of the 8-17 and 10-23 DNAzymes by abasic nucleotide and C3 spacer substitutions. Biochemistry (2010) 0.83
Microgel-based inks for paper-supported biosensing applications. Biomacromolecules (2008) 0.83
Small-molecule screening made simple for a difficult target with a signaling nucleic acid aptamer that reports on deaminase activity. Angew Chem Int Ed Engl (2006) 0.83
Controlling cellular activity by manipulating silicone surface roughness. Colloids Surf B Biointerfaces (2010) 0.83
Protein-doped monolithic silica columns for capillary liquid chromatography prepared by the sol-gel method: applications to frontal affinity chromatography. Anal Chem (2004) 0.82
A DNA-protein nanoengine for "on-demand" release and precise delivery of molecules. Angew Chem Int Ed Engl (2005) 0.82
Immobilization of heparin on a silicone surface through a heterobifunctional PEG spacer. Biomaterials (2005) 0.82
Tau protein binds single-stranded DNA sequence specifically--the proof obtained in vitro with non-equilibrium capillary electrophoresis of equilibrium mixtures. FEBS Lett (2005) 0.82
Characterization of long RNA-cleaving deoxyribozymes with short catalytic cores: the effect of excess sequence elements on the outcome of in vitro selection. Nucleic Acids Res (2006) 0.82
A graphene-based biosensing platform based on the release of DNA probes and rolling circle amplification. ACS Nano (2014) 0.81
A complex RNA-cleaving DNAzyme that can efficiently cleave a pyrimidine-pyrimidine junction. J Mol Biol (2010) 0.81
Kinetics of signaling-DNA-aptamer-ATP binding. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.81
Generic, anthracene-based hydrogel crosslinkers for photo-controllable drug delivery. Macromol Biosci (2011) 0.81
Biocompatible, hyaluronic acid modified silicone elastomers. Biomaterials (2010) 0.81
Lighting Up RNA-Cleaving DNAzymes for Biosensing. J Nucleic Acids (2012) 0.80
Surface properties of PEO-silicone composites: reducing protein adsorption. J Biomater Sci Polym Ed (2005) 0.80
Influence of cleavage site on global folding of an RNA-cleaving DNAzyme. Chembiochem (2010) 0.80
Capillary-scale frontal affinity chromatography/MALDI tandem mass spectrometry using protein-doped monolithic silica columns. Anal Chem (2005) 0.80
Pullulan encapsulation of labile biomolecules to give stable bioassay tablets. Angew Chem Int Ed Engl (2014) 0.79
Highly specific recognition of breast tumors by an RNA-cleaving fluorogenic DNAzyme probe. Anal Chem (2014) 0.79
Solid-phase enzyme activity assay utilizing an entrapped fluorescence-signaling DNA aptamer. Angew Chem Int Ed Engl (2006) 0.79
Advancements in using reporter DNAzymes for identifying pathogenic bacteria at speed and with convenience. Future Microbiol (2011) 0.79
Aptamers and small molecules play tug of war. Chem Biol (2007) 0.79
Surface immobilization of structure-switching DNA aptamers on macroporous sol-gel-derived films for solid-phase biosensing applications. Anal Chem (2011) 0.79
Entrapment of fluorescent signaling DNA aptamers in sol-gel-derived silica. Anal Chem (2005) 0.78
Characterization of non-8-17 sequences uncovers structurally diverse RNA-cleaving deoxyribozymes. Mol Biosyst (2011) 0.78
Biomimetic synthesis of gold nanocrystals using a reducing amphiphile. Small (2008) 0.78
Printing silicone-based hydrophobic barriers on paper for microfluidic assays using low-cost ink jet printers. Analyst (2014) 0.78
Rapid and efficient assembly of functional silicone surfaces protected by PEG: cell adhesion to peptide-modified PDMS. J Biomater Sci Polym Ed (2010) 0.78
Phosphoester-transfer mechanism of an RNA-cleaving acidic deoxyribozyme revealed by radioactivity tracking and enzymatic digestion. Chem Commun (Camb) (2006) 0.78