Published in Bioinformatics on November 27, 2008
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res (2010) 7.67
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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics (2006) 7.53
The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Res (2003) 15.48
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res (2013) 14.23
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res (2008) 12.45
A tyrosine kinase created by fusion of the PDGFRA and FIP1L1 genes as a therapeutic target of imatinib in idiopathic hypereosinophilic syndrome. N Engl J Med (2003) 11.17
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res (2010) 7.67
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics (2006) 7.53
The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
Modeling sample variables with an Experimental Factor Ontology. Bioinformatics (2010) 6.27
Modeling biomedical experimental processes with OBI. J Biomed Semantics (2010) 5.36
A global map of human gene expression. Nat Biotechnol (2010) 5.32
Gene expression atlas at the European bioinformatics institute. Nucleic Acids Res (2009) 4.99
ArrayExpress update--trends in database growth and links to data analysis tools. Nucleic Acids Res (2012) 4.91
Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network. Genes Dev (2003) 4.68
Standards for microarray data. Science (2002) 4.11
Submission of microarray data to public repositories. PLoS Biol (2004) 3.83
ArrayExpress service for reviewers/editors of DNA microarray papers. Nat Biotechnol (2006) 3.61
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res (2011) 3.61
Development of FuGO: an ontology for functional genomics investigations. OMICS (2006) 3.59
The European Bioinformatics Institute's data resources. Nucleic Acids Res (2003) 3.34
Standards for microarray data: an open letter. Environ Health Perspect (2004) 3.15
The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Res (2011) 3.05
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Res (2013) 2.97
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The EBI RDF platform: linked open data for the life sciences. Bioinformatics (2014) 2.55
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res (2013) 2.20
Importing ArrayExpress datasets into R/Bioconductor. Bioinformatics (2009) 2.17
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics (2013) 2.02
The MGED ontology: a framework for describing functional genomics experiments. Comp Funct Genomics (2003) 1.92
ArrayExpress: a public database of gene expression data at EBI. C R Biol (2004) 1.78
Large scale comparison of global gene expression patterns in human and mouse. Genome Biol (2010) 1.77
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Annotation of environmental OMICS data: application to the transcriptomics domain. OMICS (2006) 1.62
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Data storage and analysis in ArrayExpress. Methods Enzymol (2006) 1.54
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. BMC Bioinformatics (2010) 1.42
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Assessing affymetrix GeneChip microarray quality. BMC Bioinformatics (2011) 1.36
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Stand Genomic Sci (2010) 1.35
Genomic structure and evolution of the ancestral chromosome fusion site in 2q13-2q14.1 and paralogous regions on other human chromosomes. Genome Res (2002) 1.35
MIAME/Plant - adding value to plant microarrray experiments. Plant Methods (2006) 1.29
Annotare--a tool for annotating high-throughput biomedical investigations and resulting data. Bioinformatics (2010) 1.26
Effect of exenatide on heart rate and blood pressure in subjects with type 2 diabetes mellitus: a double-blind, placebo-controlled, randomized pilot study. Cardiovasc Diabetol (2010) 1.17
Updates to BioSamples database at European Bioinformatics Institute. Nucleic Acids Res (2013) 1.14
Physical activity correlates and barriers in head and neck cancer patients. Support Care Cancer (2007) 1.08
Latent regulatory potential of human-specific repetitive elements. Mol Cell (2012) 1.08
An open letter on microarray data from the MGED Society. Microbiology (2004) 1.05
Functionality and acceptability of a new electronic insulin injection pen with a memory feature. Curr Med Res Opin (2006) 1.04
The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinformatics (2004) 1.03
Physical activity and quality of life in head and neck cancer survivors. Support Care Cancer (2006) 1.00
AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation. Genome Biol (2013) 0.96
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress. Plant Physiol (2005) 0.96
Automating generation of textual class definitions from OWL to English. J Biomed Semantics (2011) 0.95
Data storage and analysis in ArrayExpress and Expression Profiler. Curr Protoc Bioinformatics (2008) 0.95
Observ-OM and Observ-TAB: Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information. Hum Mutat (2012) 0.95
Global gene expression profiling reveals SPINK1 as a potential hepatocellular carcinoma marker. PLoS One (2013) 0.95
Feasibility of submandibular gland preservation in neck dissection: A prospective anatomic-pathologic study. Head Neck (2010) 0.94
Wrestling with SUMO and bio-ontologies. Nat Biotechnol (2006) 0.92
Exercise preferences among patients with head and neck cancer: prevalence and associations with quality of life, symptom severity, depression, and rural residence. Head Neck (2009) 0.89
Cetuximab in refractory skin cancer treatment. J Cancer (2012) 0.88
Interchromosomal segmental duplications explain the unusual structure of PRSS3, the gene for an inhibitor-resistant trypsinogen. Mol Biol Evol (2005) 0.87
Translating standards into practice - one Semantic Web API for Gene Expression. J Biomed Inform (2012) 0.87
Contributions of the EMERALD project to assessing and improving microarray data quality. Biotechniques (2011) 0.84
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Use of concomitant glucose-lowering therapies and associated treatment results observed in clinical trials of twice-daily exenatide. Endocr Pract (2012) 0.81
Factors associated with quality of life in outpatients with head and neck cancer 6 months after diagnosis. Head Neck (2009) 0.80