Published in BMC Bioinformatics on January 30, 2009
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Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions. BMC Genomics (2010) 1.06
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An abundance of bidirectional promoters in the human genome. Genome Res (2004) 5.90
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Bidirectional gene organization: a common architectural feature of the human genome. Cell (2002) 3.47
Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs. Nat Biotechnol (2004) 2.83
Mapping Gene Ontology to proteins based on protein-protein interaction data. Bioinformatics (2004) 2.63
Coexpression of neighboring genes in the genome of Arabidopsis thaliana. Genome Res (2004) 2.52
Transcription factor binding and modified histones in human bidirectional promoters. Genome Res (2007) 2.40
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Genomic structure of the human mitochondrial chaperonin genes: HSP60 and HSP10 are localised head to head on chromosome 2 separated by a bidirectional promoter. Hum Genet (2002) 1.69
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A computational genomics approach to the identification of gene networks. Nucleic Acids Res (1997) 1.32
Expression of the murine RanBP1 and Htf9-c genes is regulated from a shared bidirectional promoter during cell cycle progression. Biochem J (1997) 1.31
Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection. BMC Genomics (2007) 1.24
Characterization of a bidirectional promoter shared between two human genes related to aging: SIRT3 and PSMD13. Genomics (2006) 1.21
Identification of the functional elements in the bidirectional promoter of the mouse O-sialoglycoprotein endopeptidase and APEX nuclease genes. Biochem Biophys Res Commun (2002) 1.18
Two genes, COL4A3 and COL4A4 coding for the human alpha3(IV) and alpha4(IV) collagen chains are arranged head-to-head on chromosome 2q36. FEBS Lett (1998) 1.18
The promoters for human DNA-PKcs (PRKDC) and MCM4: divergently transcribed genes located at chromosome 8 band q11. Genomics (1998) 1.11
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Bifunctional promoter of type IV collagen COL4A5 and COL4A6 genes regulates the expression of alpha5 and alpha6 chains in a distinct cell-specific fashion. Biochem J (2005) 0.86
Last intron of the chemokine-like factor gene contains a putative promoter for the downstream CKLF super family member 1 gene. Biochem Biophys Res Commun (2004) 0.78
Conservation and implications of eukaryote transcriptional regulatory regions across multiple species. BMC Genomics (2008) 0.78
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci U S A (2002) 5.12
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
Pseudomonas syringae effector AvrPto blocks innate immunity by targeting receptor kinases. Curr Biol (2007) 2.84
The structural basis for activation of plant immunity by bacterial effector protein AvrPto. Nature (2007) 1.95
A B-lectin receptor kinase gene conferring rice blast resistance. Plant J (2006) 1.87
A comparison of rice chloroplast genomes. Plant Physiol (2004) 1.85
The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds. Plant J (2006) 1.85
Gene-centric genomewide association study via entropy. Genetics (2008) 1.68
A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proc Natl Acad Sci U S A (2009) 1.67
Diffusion kernel-based logistic regression models for protein function prediction. OMICS (2006) 1.63
An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics (2006) 1.52
DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice. Plant J (2009) 1.38
Arabidopsis Tyrosylprotein sulfotransferase acts in the auxin/PLETHORA pathway in regulating postembryonic maintenance of the root stem cell niche. Plant Cell (2010) 1.28
A rice kinase-protein interaction map. Plant Physiol (2008) 1.28
Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine. Plant J (2004) 1.27
A Lasso regression model for the construction of microRNA-target regulatory networks. Bioinformatics (2011) 1.26
Alignment-free sequence comparison based on next-generation sequencing reads. J Comput Biol (2013) 1.26
Molecular isolation of the M gene suggests that a conserved-residue conversion induces the formation of bisexual flowers in cucumber plants. Genetics (2009) 1.24
Constitutive expression of a miR319 gene alters plant development and enhances salt and drought tolerance in transgenic creeping bentgrass. Plant Physiol (2013) 1.21
Efficacy and safety of levomilnacipran sustained release in moderate to severe major depressive disorder: a randomized, double-blind, placebo-controlled, proof-of-concept study. J Clin Psychiatry (2013) 1.19
Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.). Planta (2005) 1.12
Escitalopram in the treatment of panic disorder: a randomized, double-blind, placebo-controlled trial. J Clin Psychiatry (2003) 1.11
An engineered multidomain bactericidal peptide as a model for targeted antibiotics against specific bacteria. Nat Biotechnol (2003) 1.11
Comparison of metagenomic samples using sequence signatures. BMC Genomics (2012) 1.10
DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice. Plant Cell (2012) 1.07
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Brief Bioinform (2013) 1.07
Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres. Chromosoma (2008) 1.05
New powerful statistics for alignment-free sequence comparison under a pattern transfer model. J Theor Biol (2011) 1.05
Ischemic postconditioning-mediated miRNA-21 protects against cardiac ischemia/reperfusion injury via PTEN/Akt pathway. PLoS One (2013) 1.03
Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.). Plant Cell Environ (2013) 1.02
Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses. Plant Mol Biol (2008) 1.02
Fallback foods of temperate-living primates: a case study on snub-nosed monkeys. Am J Phys Anthropol (2009) 1.00
Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference. Plant Mol Biol (2003) 0.99
Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells. Nucleic Acids Res (2013) 0.99
Escitalopram in the acute treatment of depressed patients aged 60 years or older. Am J Geriatr Psychiatry (2008) 0.98
Etiologic diagnosis of lower respiratory tract bacterial infections using sputum samples and quantitative loop-mediated isothermal amplification. PLoS One (2012) 0.98
Combinatorial regulation of transcription factors and microRNAs. BMC Syst Biol (2010) 0.98
Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array. BMC Genomics (2009) 0.97
Cytokinin represses phosphate-starvation response through increasing of intracellular phosphate level. Plant Cell Environ (2006) 0.97
Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea. Plant Mol Biol (2012) 0.96
Choice of analytical method can have dramatic effects on primate home range estimates. Primates (2008) 0.96
Heterologous expression of OsSIZ1, a rice SUMO E3 ligase, enhances broad abiotic stress tolerance in transgenic creeping bentgrass. Plant Biotechnol J (2012) 0.96
Opaque7 encodes an acyl-activating enzyme-like protein that affects storage protein synthesis in maize endosperm. Genetics (2011) 0.95
RseqFlow: workflows for RNA-Seq data analysis. Bioinformatics (2011) 0.95
An AT-hook gene is required for palea formation and floral organ number control in rice. Dev Biol (2011) 0.95
Transmembrane TNF-α promotes suppressive activities of myeloid-derived suppressor cells via TNFR2. J Immunol (2013) 0.94
Mild hypoxia-induced cardiomyocyte hypertrophy via up-regulation of HIF-1α-mediated TRPC signalling. J Cell Mol Med (2012) 0.93
Functional characterization of rice OsDof12. Planta (2009) 0.93
Fine mapping of qSB-11(LE), the QTL that confers partial resistance to rice sheath blight. Theor Appl Genet (2013) 0.92
Systematic identification of conserved motif modules in the human genome. BMC Genomics (2010) 0.91
Double-blind comparison of escitalopram and duloxetine in the acute treatment of major depressive disorder. Clin Drug Investig (2007) 0.91
STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice. Plant J (2009) 0.90
TGFBR3, a potential negative regulator of TGF-β signaling, protects cardiac fibroblasts from hypoxia-induced apoptosis. J Cell Physiol (2011) 0.90
Identifying the genome-wide sequence variations and developing new molecular markers for genetics research by re-sequencing a Landrace cultivar of foxtail millet. PLoS One (2013) 0.90
Escitalopram maintenance treatment for prevention of recurrent depression: a randomized, placebo-controlled trial. J Clin Psychiatry (2006) 0.90
Tomato SlMKK2 and SlMKK4 contribute to disease resistance against Botrytis cinerea. BMC Plant Biol (2014) 0.90
Statistical analysis reveals co-expression patterns of many pairs of genes in yeast are jointly regulated by interacting loci. PLoS Genet (2013) 0.90
Rb1 postconditioning attenuates liver warm ischemia-reperfusion injury through ROS-NO-HIF pathway. Life Sci (2011) 0.89
Identification and fine mapping of a mutant gene for palealess spikelet in rice. Planta (2004) 0.89
Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings. BMC Genomics (2014) 0.88
Isolation and functional analysis of LiYAB1, a YABBY family gene, from lily (Lilium longiflorum). J Plant Physiol (2009) 0.88
Allografts of the acellular sciatic nerve and brain-derived neurotrophic factor repair spinal cord injury in adult rats. PLoS One (2012) 0.88
Molecular cloning, expression and characterization of the functional domain of CTLA4 from the rhesus monkey, Macaca mulatta. Dev Comp Immunol (2011) 0.87
In vivo monitoring of angiogenesis inhibition via down-regulation of mir-21 in a VEGFR2-luc murine breast cancer model using bioluminescent imaging. PLoS One (2013) 0.87
MicroRNA-22 downregulation by atorvastatin in a mouse model of cardiac hypertrophy: a new mechanism for antihypertrophic intervention. Cell Physiol Biochem (2013) 0.86
Randomized placebo-controlled trial of escitalopram and venlafaxine XR in the treatment of generalized anxiety disorder. Depress Anxiety (2008) 0.86
Enhancement of cytotoxicity of antimicrobial peptide magainin II in tumor cells by bombesin-targeted delivery. Acta Pharmacol Sin (2010) 0.86
Chondroitin sulfate as a molecular portal that preferentially mediates the apoptotic killing of tumor cells by penetratin-directed mitochondria-disrupting peptides. J Biol Chem (2010) 0.85
Binding energy landscape analysis helps to discriminate true hits from high-scoring decoys in virtual screening. J Chem Inf Model (2010) 0.85
The efficacy and tolerability of cariprazine in acute mania associated with bipolar I disorder: a phase II trial. Bipolar Disord (2014) 0.85
Hybridization modeling of oligonucleotide SNP arrays for accurate DNA copy number estimation. Nucleic Acids Res (2009) 0.85
OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC Plant Biol (2014) 0.85
Functional analysis of Pid3-A4, an ortholog of rice blast resistance gene Pid3 revealed by allele mining in common wild rice. Phytopathology (2013) 0.84
Proteomic and transcriptomic analysis of rice mature seed-derived callus differentiation. Proteomics (2007) 0.84
Tomato SR/CAMTA transcription factors SlSR1 and SlSR3L negatively regulate disease resistance response and SlSR1L positively modulates drought stress tolerance. BMC Plant Biol (2014) 0.84
Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses. Mol Biol Rep (2009) 0.83
Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression. Physiol Plant (2008) 0.83
Penetratin-mediated delivery enhances the antitumor activity of the cationic antimicrobial peptide Magainin II. Cancer Biother Radiopharm (2013) 0.83
Maternal responses to dead infants in Yunnan snub-nosed monkey (Rhinopithecus bieti) in the Baimaxueshan Nature Reserve, Yunnan, China. Primates (2012) 0.83
Expression of a novel antimicrobial peptide Penaeidin4-1 in creeping bentgrass (Agrostis stolonifera L.) enhances plant fungal disease resistance. PLoS One (2011) 0.82
Expression, purification, and in vitro refolding of a humanized single-chain Fv antibody against human CTLA4 (CD152). Protein Expr Purif (2005) 0.82
Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks. MBio (2014) 0.82
Escitalopram versus SNRI antidepressants in the acute treatment of major depressive disorder: integrative analysis of four double-blind, randomized clinical trials. CNS Spectr (2009) 0.82
Detecting differentially expressed genes by relative entropy. J Theor Biol (2005) 0.82
REMAS: a new regression model to identify alternative splicing events from exon array data. BMC Bioinformatics (2009) 0.82
Arabidopsis DAL1 and DAL2, two RING finger proteins homologous to Drosophila DIAP1, are involved in regulation of programmed cell death. Plant Cell Rep (2010) 0.82
Polymorphism at the esterase isozyme locus Est10 associated with phylogenetic differentiation in rice. Genes Genet Syst (2003) 0.82
Integrating multiple types of data to predict novel cell cycle-related genes. BMC Syst Biol (2011) 0.82
The de novo biosynthesis of vitamin B6 is required for disease resistance against Botrytis cinerea in tomato. Mol Plant Microbe Interact (2014) 0.82
The efficacy of extended-release levomilnacipran in moderate to severe major depressive disorder: secondary and post-hoc analyses from a randomized, double-blind, placebo-controlled study. Int Clin Psychopharmacol (2014) 0.82