Identification of cis-regulatory sequences that activate transcription in the suspensor of plant embryos.

PubWeight™: 0.93‹?›

🔗 View Article (PMC 2638740)

Published in Proc Natl Acad Sci U S A on February 10, 2009

Authors

Tomokazu Kawashima1, Xingjun Wang, Kelli F Henry, Yuping Bi, Koen Weterings, Robert B Goldberg

Author Affiliations

1: Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, CA 90095-1606, USA.

Articles cited by this

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93

WebLogo: a sequence logo generator. Genome Res (2004) 59.58

GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J (1987) 57.37

A simple and general method for transferring genes into plants. Science (1985) 25.43

Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res (1999) 13.02

A genomic regulatory network for development. Science (2002) 9.67

Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol (2005) 5.95

Different Temporal and Spatial Gene Expression Patterns Occur during Anther Development. Plant Cell (1990) 5.06

Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development (2004) 3.93

Plant embryogenesis: zygote to seed. Science (1994) 3.88

Localization and conditional redundancy of regulatory elements in rbcS-3A, a pea gene encoding the small subunit of ribulose-bisphosphate carboxylase. Proc Natl Acad Sci U S A (1988) 3.23

Embryogenesis in Angiosperms: Development of the Suspensor. Plant Cell (1993) 3.07

Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci U S A (2000) 2.58

The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron. Genes Dev (2007) 2.34

Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev Cell (2008) 1.91

Binding sites for two novel phosphoproteins, 3AF5 and 3AF3, are required for rbcS-3A expression. Plant Cell (1992) 1.50

Regulatory mechanism of plant gene transcription by GT-elements and GT-factors. Trends Plant Sci (1999) 1.39

A tobacco DNA binding protein that interacts with a light-responsive box II element. Plant Cell (1992) 1.35

Characterization of a gene encoding a DNA binding protein with specificity for a light-responsive element. Plant Cell (1992) 1.33

Transcriptional regulation of epidermal cell fate in the Arabidopsis embryo. Development (2007) 1.32

Positive and negative cis-acting DNA domains are required for spatial and temporal regulation of gene expression by a seed storage protein promoter. EMBO J (1991) 1.29

Using genomics to study legume seed development. Plant Physiol (2007) 1.22

WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development. Mol Biol Evol (2007) 1.17

GT-2: a transcription factor with twin autonomous DNA-binding domains of closely related but different target sequence specificity. EMBO J (1992) 1.08

Regional localization of suspensor mRNAs during early embryo development. Plant Cell (2001) 0.96

Identification of genes that are up- or down-regulated in the apical or basal cell of maize two-celled embryos and monitoring their expression during zygote development by a cell manipulation- and PCR-based approach. Plant Cell Physiol (2005) 0.94

The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98. Plant J (2008) 0.92

A promoter from the loblolly pine PtNIP1;1 gene directs expression in an early-embryogenesis and suspensor-specific fashion. Planta (2002) 0.79

Articles by these authors

DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. Cell (2006) 6.11

DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell (2002) 4.31

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc Natl Acad Sci U S A (2010) 2.81

Generation of glyco-engineered Nicotiana benthamiana for the production of monoclonal antibodies with a homogeneous human-like N-glycan structure. Plant Biotechnol J (2008) 2.49

Coloration strategies in peacock feathers. Proc Natl Acad Sci U S A (2003) 2.45

LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development. Plant Cell (2003) 2.36

Control of seed mass by APETALA2. Proc Natl Acad Sci U S A (2005) 2.29

Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase. Dev Cell (2003) 2.24

Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc Natl Acad Sci U S A (2013) 1.87

Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc Natl Acad Sci U S A (2006) 1.86

DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell (2006) 1.64

Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor. Proc Natl Acad Sci U S A (2003) 1.60

Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis. Proc Natl Acad Sci U S A (2008) 1.55

The duplicated B-class heterodimer model: whorl-specific effects and complex genetic interactions in Petunia hybrida flower development. Plant Cell (2004) 1.51

SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell (2007) 1.39

Regulation of seed size by hypomethylation of maternal and paternal genomes. Plant Physiol (2006) 1.33

The suspensor: not just suspending the embryo. Trends Plant Sci (2009) 1.28

Effects of APETALA2 on embryo, endosperm, and seed coat development determine seed size in Arabidopsis. Sex Plant Reprod (2009) 1.23

Using genomics to study legume seed development. Plant Physiol (2007) 1.22

The burden of proof: a response to Rosi-Marshall et al. Proc Natl Acad Sci U S A (2008) 1.21

An invariant aspartic acid in the DNA glycosylase domain of DEMETER is necessary for transcriptional activation of the imprinted MEDEA gene. Proc Natl Acad Sci U S A (2004) 1.18

Transcriptome profiling of peanut gynophores revealed global reprogramming of gene expression during early pod development in darkness. BMC Genomics (2013) 1.07

Aquaporins of the PIP2 class are required for efficient anther dehiscence in tobacco. Plant Physiol (2005) 1.05

TANMEI/EMB2757 encodes a WD repeat protein required for embryo development in Arabidopsis. Plant Physiol (2005) 1.03

Production of complex multiantennary N-glycans in Nicotiana benthamiana plants. Plant Physiol (2011) 1.01

PIP1 and PIP2 aquaporins are differentially expressed during tobacco anther and stigma development. J Exp Bot (2004) 0.97

RASPBERRY3 gene encodes a novel protein important for embryo development. Plant Physiol (2002) 0.91

Biologically active, magnICON®-expressed EPO-Fc from stably transformed Nicotiana benthamiana plants presenting tetra-antennary N-glycan structures. J Biotechnol (2012) 0.87

Changes in gene expression during male meiosis in Petunia hybrida. Chromosome Res (2007) 0.86

Genome-wide identification of Thellungiella salsuginea microRNAs with putative roles in the salt stress response. BMC Plant Biol (2013) 0.82

Identification of quantitative trait loci controlling gene expression during the innate immunity response of soybean. Plant Physiol (2011) 0.81

Peanut (Arachis hypogaea) Expressed Sequence Tag Project: Progress and Application. Comp Funct Genomics (2012) 0.81

Retroperitoneal paraganglioma with metastasis to the abdominal vertebra: a case report. Diagn Pathol (2013) 0.80

Divergence of recently duplicated M{gamma}-type MADS-box genes in Petunia. Mol Biol Evol (2009) 0.80

Induced expression of AtLEC1 and AtLEC2 differentially promotes somatic embryogenesis in transgenic tobacco plants. PLoS One (2013) 0.80

Summary of the workshop on the power of aggregated toxicity data. Toxicol Appl Pharmacol (2008) 0.79

The Plant Cell: 20 years young. Plant Cell (2009) 0.79

Transcriptome atlas of the Arabidopsis funiculus--a study of maternal seed subregions. Plant J (2015) 0.79

Overexpression of peanut diacylglycerol acyltransferase 2 in Escherichia coli. PLoS One (2013) 0.79

Identification and expression dynamics of three WUSCHEL related homeobox 13 (WOX13) genes in peanut. Dev Genes Evol (2015) 0.78

Cloning PCR products. An overview. Methods Mol Biol (2002) 0.78

Active metal strip hybrid plasmonic waveguide with low critical material gain. Opt Express (2012) 0.78

Optical amplification in Er/Yb silicate slot waveguide. Opt Lett (2012) 0.78

Introduction of tri-antennary N-glycans in Arabidopsis thaliana plants. Plant Sci (2011) 0.77

Silencing of the pollen-specific gene NTP303 and its family members in tobacco affects in vivo pollen tube growth and results in male sterile plants. Plant Mol Biol (2004) 0.77

Molecular cloning, expression, and evolution analysis of type II CHI gene from peanut (Arachis hypogaea L.). Dev Genes Evol (2015) 0.76

A cis-regulatory module activating transcription in the suspensor contains five cis-regulatory elements. Plant Mol Biol (2015) 0.76

[Development of transgenic maize with anti-rough dwarf virus artificial miRNA vector and their disease resistance]. Sheng Wu Gong Cheng Xue Bao (2015) 0.75

Establishment of multiple shoot clumps from maize (Zea mays L.) and regeneration of herbicide-resistant transgenic plantlets. Sci China C Life Sci (2002) 0.75

Demonstration of 6.25 Gbaud advanced modulation formats with subcarrier multiplexed technique on silicon Mach-Zehnder modulator. Opt Express (2014) 0.75

[Advances in resveratrol studies]. Sheng Wu Gong Cheng Xue Bao (2008) 0.75

On-chip high-efficiency wavelength multicasting of PAM3/PAM4 signals using low-loss AlGaAs-on-insulator nanowaveguides. Opt Lett (2020) 0.75

Dissolved black carbon facilities photoreduction of Hg2+ to Hg0 and reduces mercury uptake by lettuce (Lactuca sativa L.). Environ Sci Technol (2020) 0.75

Improved sample preparation for CE-LIF analysis of plant N-glycans. Electrophoresis (2011) 0.75

Proposed consolidation among health insurers could be hazardous to the nation's health. Mod Healthc (2016) 0.75

Compact and broadband mode multiplexer and demultiplexer based on asymmetric plasmonic-dielectric coupling. Appl Opt (2014) 0.75

Offshore Medical Schools Are Buying Clinical Clerkships in U.S. Hospitals: The Problem and Potential Solutions. Acad Med (2016) 0.75

New isoforms of odorant-binding proteins and potential semiochemicals of locusts. Arch Insect Biochem Physiol (2007) 0.75

[Improving fatty acid composition and increasing triacylglycerol content in plants by gene engineering: a review]. Sheng Wu Gong Cheng Xue Bao (2010) 0.75

Sol-gel synthesis of luminescent InP nanocrystals embedded in silica glasses. J Nanosci Nanotechnol (2005) 0.75

Low threshold Er(x)Yb(Y)(2-x)SiO(5) nanowire waveguide amplifier. Appl Opt (2015) 0.75

An investigation of exciton behavior in type-II self-assembled GaSb/GaAs quantum dots. Nanotechnology (2015) 0.75

Ultra-compact optical 90° hybrid based on a wedge-shaped 2 × 4 MMI coupler and a 2 × 2 MMI coupler in silicon-on-insulator. Opt Express (2013) 0.75

Demonstration of low power penalty of silicon Mach-Zehnder modulator in long-haul transmission. Opt Express (2012) 0.75

Low-voltage, high speed, compact silicon modulator for BPSK modulation. Opt Express (2013) 0.75

Sol-gel synthesis and photoluminescence of III-V semiconductor InAs nanocrystals embedded in silica glasses. J Nanosci Nanotechnol (2005) 0.75