Published in J Proteomics on February 24, 2009
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res (2009) 1.98
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings. PLoS One (2015) 1.41
Phosphosite mapping of P-type plasma membrane H+-ATPase in homologous and heterologous environments. J Biol Chem (2011) 1.02
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. Plant Cell (2014) 1.01
The acidic A-domain of Arabidopsis TOC159 occurs as a hyperphosphorylated protein. Plant Physiol (2010) 0.96
Proteome analysis of peroxisomes from etiolated Arabidopsis seedlings identifies a peroxisomal protease involved in β-oxidation and development. Plant Physiol (2013) 0.96
Crystal structure of rice importin-α and structural basis of its interaction with plant-specific nuclear localization signals. Plant Cell (2012) 0.95
Protocol: Optimised methodology for isolation of nuclei from leaves of species in the Solanaceae and Rosaceae families. Plant Methods (2013) 0.94
Early cytokinin response proteins and phosphoproteins of Arabidopsis thaliana identified by proteome and phosphoproteome profiling. J Exp Bot (2010) 0.93
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics (2010) 0.92
P(3)DB: An Integrated Database for Plant Protein Phosphorylation. Front Plant Sci (2012) 0.91
Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar. BMC Plant Biol (2011) 0.90
Phosphorylation and stabilization of Arabidopsis MAP kinase phosphatase 1 in response to UV-B stress. J Biol Chem (2012) 0.86
Predicting and analyzing protein phosphorylation sites in plants using musite. Front Plant Sci (2012) 0.84
Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases. Biochem J (2014) 0.84
Deciphering the roles of acyl-CoA-binding proteins in plant cells. Protoplasma (2015) 0.83
MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species. Front Plant Sci (2012) 0.83
Phosphoproteomics technologies and applications in plant biology research. Front Plant Sci (2015) 0.80
Phosphorylation of serine residues in the N-terminus modulates the activity of ACA8, a plasma membrane Ca2+-ATPase of Arabidopsis thaliana. J Exp Bot (2011) 0.79
Nuclear proteome response to cell wall removal in rice (Oryza sativa). Proteome Sci (2013) 0.78
Identification and Comparative Analysis of H2O2-Scavenging Enzymes (Ascorbate Peroxidase and Glutathione Peroxidase) in Selected Plants Employing Bioinformatics Approaches. Front Plant Sci (2016) 0.77
Multiplex staining of 2-DE gels for an initial phosphoproteome analysis of germinating seeds and early grown seedlings from a non-orthodox specie: Quercus ilex L. subsp. ballota [Desf.] Samp. Front Plant Sci (2015) 0.77
Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana. Front Plant Sci (2016) 0.77
CCoAOMT Down-Regulation Activates Anthocyanin Biosynthesis in Petunia. Plant Physiol (2015) 0.77
Regulation of the Regulators: Post-Translational Modifications, Subcellular, and Spatiotemporal Distribution of Plant 14-3-3 Proteins. Front Plant Sci (2016) 0.76
The Raf-like Kinase ILK1 and the High Affinity K+ Transporter HAK5 Are Required for Innate Immunity and Abiotic Stress Response. Plant Physiol (2016) 0.76
UNcleProt (Universal Nuclear Protein database of barley): the first nuclear protein database that distinguishes proteins from different phases of the cell cycle. Nucleus (2016) 0.75
Cyclin-dependent kinase activity enhances phosphatidylcholine biosynthesis in Arabidopsis by repressing phosphatidic acid phosphohydrolase activity. Plant J (2016) 0.75
Increasing phosphatidylinositol (4,5) bisphosphate biosynthesis affects plant nuclear lipids and nuclear functions. Plant Physiol Biochem (2012) 0.75
Plant Organellar Proteomics in Response to Dehydration: Turning Protein Repertoire into Insights. Front Plant Sci (2016) 0.75
The Pfam protein families database. Nucleic Acids Res (2004) 56.46
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet (2010) 7.56
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
The receptor-like kinase SERK3/BAK1 is a central regulator of innate immunity in plants. Proc Natl Acad Sci U S A (2007) 5.76
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature (2007) 4.72
Bacterial effectors target the common signaling partner BAK1 to disrupt multiple MAMP receptor-signaling complexes and impede plant immunity. Cell Host Microbe (2008) 4.08
Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell (2004) 3.51
Application of 'next-generation' sequencing technologies to microbial genetics. Nat Rev Microbiol (2009) 3.30
High throughput virus-induced gene silencing implicates heat shock protein 90 in plant disease resistance. EMBO J (2003) 3.25
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature (2009) 3.01
Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Mol Cell Proteomics (2003) 2.98
A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics (2008) 2.80
Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science (2010) 2.62
AvrPtoB targets the LysM receptor kinase CERK1 to promote bacterial virulence on plants. Curr Biol (2009) 2.59
De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett (2008) 2.50
OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis. Nature (2004) 2.45
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Plant J (2007) 2.40
Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biol (2011) 2.38
De novo assembly of short sequence reads. Brief Bioinform (2010) 2.29
The PEN1 syntaxin defines a novel cellular compartment upon fungal attack and is required for the timely assembly of papillae. Mol Biol Cell (2004) 2.12
MEKK1 is required for MPK4 activation and regulates tissue-specific and temperature-dependent cell death in Arabidopsis. J Biol Chem (2006) 2.11
Modulation of CYP79 genes and glucosinolate profiles in Arabidopsis by defense signaling pathways. Plant Physiol (2003) 2.04
The tomato NBARC-LRR protein Prf interacts with Pto kinase in vivo to regulate specific plant immunity. Plant Cell (2006) 1.99
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res (2009) 1.98
Early events in the pathogenicity of Pseudomonas syringae on Nicotiana benthamiana. Plant J (2007) 1.89
Control of plant organ size by KLUH/CYP78A5-dependent intercellular signaling. Dev Cell (2007) 1.80
Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One (2010) 1.80
Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1. Proc Natl Acad Sci U S A (2011) 1.78
Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog (2012) 1.75
Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. PLoS One (2012) 1.75
Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment. J Proteome Res (2006) 1.71
G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss. Bioinformatics (2006) 1.71
A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528. BMC Genomics (2009) 1.67
Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Mol Cell Proteomics (2003) 1.65
Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. J Bacteriol (2009) 1.64
Determination of primary sequence specificity of Arabidopsis MAPKs MPK3 and MPK6 leads to identification of new substrates. Biochem J (2012) 1.64
Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1. Proc Natl Acad Sci U S A (2010) 1.63
Coordination of plastid and nuclear gene expression. Philos Trans R Soc Lond B Biol Sci (2003) 1.61
Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol Cell Proteomics (2007) 1.57
A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact (2009) 1.52
The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. PLoS Pathog (2011) 1.52
Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana. Sci Signal (2013) 1.51
Nonagricultural reservoirs contribute to emergence and evolution of Pseudomonas syringae crop pathogens. New Phytol (2013) 1.51
MAP kinase phosphatase1 and protein tyrosine phosphatase1 are repressors of salicylic acid synthesis and SNC1-mediated responses in Arabidopsis. Plant Cell (2009) 1.45
Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1. EMBO J (2002) 1.44
Host inhibition of a bacterial virulence effector triggers immunity to infection. Science (2009) 1.41
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics (2013) 1.37
Activity profiling of papain-like cysteine proteases in plants. Plant Physiol (2004) 1.36
Spatio-temporal cellular dynamics of the Arabidopsis flagellin receptor reveal activation status-dependent endosomal sorting. Plant Cell (2012) 1.36
A plasma membrane syntaxin is phosphorylated in response to the bacterial elicitor flagellin. J Biol Chem (2003) 1.33
The syntaxin SYP132 contributes to plant resistance against bacteria and secretion of pathogenesis-related protein 1. Proc Natl Acad Sci U S A (2007) 1.31
Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc Natl Acad Sci U S A (2010) 1.29
Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog (2011) 1.29
Hierarchy and roles of pathogen-associated molecular pattern-induced responses in Nicotiana benthamiana. Plant Physiol (2011) 1.28
Bacterial virulence effectors and their activities. Curr Opin Plant Biol (2010) 1.25
Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt. FEMS Microbiol Lett (2010) 1.25
The receptor-like kinase SERK3/BAK1 is required for basal resistance against the late blight pathogen phytophthora infestans in Nicotiana benthamiana. PLoS One (2011) 1.22
A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves. Plant Physiol (2009) 1.22
Prf immune complexes of tomato are oligomeric and contain multiple Pto-like kinases that diversify effector recognition. Plant J (2009) 1.20
SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant J (2007) 1.19
Effector proteins of the bacterial pathogen Pseudomonas syringae alter the extracellular proteome of the host plant, Arabidopsis thaliana. Mol Cell Proteomics (2008) 1.18
Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana. Proteomics (2008) 1.17
The LysM receptor kinase CERK1 mediates bacterial perception in Arabidopsis. Plant Signal Behav (2009) 1.13
A patch of surface-exposed residues mediates negative regulation of immune signaling by tomato Pto kinase. Plant Cell (2004) 1.12
Profiling the secretomes of plant pathogenic Proteobacteria. FEMS Microbiol Rev (2005) 1.12
Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact (2010) 1.08
Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytol (2011) 1.08
Quantitative proteomics in plants: choices in abundance. Plant Cell (2007) 1.07
DNA binding activity of the Escherichia coli nitric oxide sensor NorR suggests a conserved target sequence in diverse proteobacteria. J Bacteriol (2004) 1.04
PhosCalc: a tool for evaluating the sites of peptide phosphorylation from mass spectrometer data. BMC Res Notes (2008) 1.04
An Arabidopsis protein phosphorylated in response to microbial elicitation, AtPHOS32, is a substrate of MAP kinases 3 and 6. J Biol Chem (2008) 1.02
Aspartate oxidase plays an important role in Arabidopsis stomatal immunity. Plant Physiol (2012) 1.01
Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria. Plant J (2011) 0.97
Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing. PLoS One (2013) 0.97
Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana. Plant J (2006) 0.96
Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the sigma54-dependent regulon in Campylobacter jejuni. Microbiology (2007) 0.96
Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects. Sci Rep (2013) 0.95
Plant immunity: AvrPto targets the frontline. Curr Biol (2008) 0.95
Regulation of tomato Prf by Pto-like protein kinases. Mol Plant Microbe Interact (2009) 0.95
Phosphorylation sites of Arabidopsis MAP kinase substrate 1 (MKS1). Biochim Biophys Acta (2007) 0.95
Changes in external pH rapidly alter plant gene expression and modulate auxin and elicitor responses. Plant Cell Environ (2010) 0.95
A simple and rapid technique for detecting protein phosphorylation using one-dimensional isoelectric focusing gels and immunoblot analysis. Plant J (2008) 0.94
Evidence for large complex networks of plant short silencing RNAs. PLoS One (2010) 0.94
Paranoid potato: phytophthora-resistant genotype shows constitutively activated defense. Plant Signal Behav (2012) 0.94
Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland. FEMS Microbiol Lett (2013) 0.93
Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae. Proc Natl Acad Sci U S A (2014) 0.92
An adaptive alignment algorithm for quality-controlled label-free LC-MS. Mol Cell Proteomics (2013) 0.92
Microarray analysis of chromatin-immunoprecipitated DNA identifies specific regions of tobacco genes associated with acetylated histones. Plant J (2004) 0.91
Activation of the heat shock transcription factor Hsf1 is essential for the full virulence of the fungal pathogen Candida albicans. Fungal Genet Biol (2010) 0.91
Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Environ Microbiol (2007) 0.91
Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants. J Bacteriol (2012) 0.90
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics (2014) 0.89