Published in Nature on June 03, 2009
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet (2010) 15.70
Epigenetic reprogramming in plant and animal development. Science (2010) 5.18
Transgenerational epigenetic instability is a source of novel methylation variants. Science (2011) 3.66
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Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc Natl Acad Sci U S A (2011) 2.67
miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature (2014) 2.61
Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature (2010) 2.53
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell (2010) 2.51
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The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci. PLoS Genet (2014) 1.06
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Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. Proc Natl Acad Sci U S A (2013) 1.02
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Parental genome dosage imbalance deregulates imprinting in Arabidopsis. PLoS Genet (2010) 0.95
The differential transcription network between embryo and endosperm in the early developing maize seed. Plant Physiol (2013) 0.95
RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development (2013) 0.94
A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis in Arabidopsis Intraspecific Hybrids. Plant Cell (2014) 0.93
A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis. Mol Cell (2015) 0.93
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Genome reprogramming and small interfering RNA in the Arabidopsis germline. Curr Opin Genet Dev (2011) 0.91
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Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA (2011) 0.89
ARGONAUTE9-dependent silencing of transposable elements in pericentromeric regions of Arabidopsis. Plant Signal Behav (2010) 0.87
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Genome-wide characterization of methylguanosine-capped and polyadenylated small RNAs in the rice blast fungus Magnaporthe oryzae. Nucleic Acids Res (2010) 0.85
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A plant-specific transcription factor IIB-related protein, pBRP2, is involved in endosperm growth control. PLoS One (2011) 0.84
Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific crosses. Plant Cell (2013) 0.84
Epigenetic control of cell specification during female gametogenesis. Sex Plant Reprod (2011) 0.84
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Multiple roles for small RNAs during plant reproduction. Curr Opin Plant Biol (2011) 0.82
A computational workflow to identify allele-specific expression and epigenetic modification in maize. Genomics Proteomics Bioinformatics (2013) 0.82
DNA methylation mediated control of gene expression is critical for development of crown gall tumors. PLoS Genet (2013) 0.82
Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in Maize (Zea may). BMC Genomics (2015) 0.82
Evolution and function of genomic imprinting in plants. Genes Dev (2015) 0.82
Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis. EMBO Rep (2013) 0.81
Reprogramming the epigenome during germline and seed development. Genome Biol (2009) 0.81
Imprinted green beards: a little less than kin and more than kind. Biol Lett (2013) 0.81
Endogenous small-noncoding RNAs and their roles in chilling response and stress acclimation in Cassava. BMC Genomics (2014) 0.81
Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes. PLoS One (2010) 0.80
Chromatin dynamics during plant sexual reproduction. Front Plant Sci (2014) 0.80
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Balance between maternal and paternal alleles sets the timing of resource accumulation in the maize endosperm. Proc Biol Sci (2009) 0.79
Dynamics of maternal and paternal effects on embryo and seed development in wild radish (Raphanus sativus). Ann Bot (2010) 0.79
Dynamic parent-of-origin effects on small interfering RNA expression in the developing maize endosperm. BMC Plant Biol (2014) 0.79
Pollen-specific activation of Arabidopsis retrogenes is associated with global transcriptional reprogramming. Plant Cell (2014) 0.78
The ability to form homodimers is essential for RDM1 to function in RNA-directed DNA methylation. PLoS One (2014) 0.78
DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function. Plant Cell (2016) 0.78
The pivotal role of small non-coding RNAs in the regulation of seed development. Plant Cell Rep (2017) 0.78
Pol IV-Dependent siRNA Production is Reduced in Brassica rapa. Biology (Basel) (2013) 0.77
Progress and Promise in using Arabidopsis to Study Adaptation, Divergence, and Speciation. Arabidopsis Book (2010) 0.77
Endosperm and imprinting, inextricably linked. Plant Physiol (2016) 0.77
A new approach for annotation of transposable elements using small RNA mapping. Nucleic Acids Res (2015) 0.77
Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice. BMC Genomics (2017) 0.76
Epigenetic Modifications during Angiosperm Gametogenesis. Front Plant Sci (2012) 0.76
Temporal small RNA transcriptome profiling unraveled partitioned miRNA expression in developing maize endosperms between reciprocal crosses. Front Plant Sci (2015) 0.76
Parental age affects somatic mutation rates in the progeny of flowering plants. Plant Physiol (2015) 0.76
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The small RNA profile during Drosophila melanogaster development. Dev Cell (2003) 11.46
Elucidation of the small RNA component of the transcriptome. Science (2005) 8.66
RNA polymerase IV directs silencing of endogenous DNA. Science (2005) 6.66
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell (2005) 6.56
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell (2009) 6.05
Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol (2007) 5.86
Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet (2005) 5.48
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (2003) 5.00
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev (2005) 4.50
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PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc Natl Acad Sci U S A (2008) 3.33
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InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature (2007) 4.72
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Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science (2010) 3.57
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Application of 'next-generation' sequencing technologies to microbial genetics. Nat Rev Microbiol (2009) 3.30
High throughput virus-induced gene silencing implicates heat shock protein 90 in plant disease resistance. EMBO J (2003) 3.25
An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol (2005) 3.14
Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death. EMBO J (2002) 2.90
A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics (2008) 2.80
Ubiquitin ligase-associated protein SGT1 is required for host and nonhost disease resistance in plants. Proc Natl Acad Sci U S A (2002) 2.76
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A (2010) 2.74
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An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell (2007) 2.55
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell (2010) 2.51
De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett (2008) 2.50
The Polerovirus silencing suppressor P0 targets ARGONAUTE proteins for degradation. Curr Biol (2007) 2.48
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Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biol (2011) 2.38
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Virus-induced gene silencing in plants. Methods (2003) 2.29
De novo assembly of short sequence reads. Brief Bioinform (2010) 2.29
Cloning and characterization of micro-RNAs from moss. Plant J (2005) 2.19
Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.05
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Identification and characterization of small RNAs from the phloem of Brassica napus. Plant J (2007) 1.92
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An antiviral defense role of AGO2 in plants. PLoS One (2011) 1.88
Elicitor-mediated oligomerization of the tobacco N disease resistance protein. Plant Cell (2005) 1.84
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RNAcentral: A vision for an international database of RNA sequences. RNA (2011) 1.73
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Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol Cell Proteomics (2007) 1.57
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Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog (2011) 1.29
Physical association of the NB-LRR resistance protein Rx with a Ran GTPase-activating protein is required for extreme resistance to Potato virus X. Plant Cell (2007) 1.29
Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters. Nat Genet (2013) 1.29
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siRNAs and DNA methylation: seedy epigenetics. Trends Plant Sci (2010) 1.25
The silencing suppressor P25 of Potato virus X interacts with Argonaute1 and mediates its degradation through the proteasome pathway. Mol Plant Pathol (2010) 1.24
Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis. Proc Natl Acad Sci U S A (2010) 1.21
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Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. Proc Natl Acad Sci U S A (2012) 1.16
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Artificial evolution extends the spectrum of viruses that are targeted by a disease-resistance gene from potato. Proc Natl Acad Sci U S A (2006) 1.13
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet (2010) 1.12
Profiling the secretomes of plant pathogenic Proteobacteria. FEMS Microbiol Rev (2005) 1.12
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Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact (2010) 1.08
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Silencing of a gene encoding a protein component of the oxygen-evolving complex of photosystem II enhances virus replication in plants. Virology (2002) 1.00
Identification of three wheat globulin genes by screening a Triticum aestivum BAC genomic library with cDNA from a diabetes-associated globulin. BMC Plant Biol (2009) 0.96
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Evidence for large complex networks of plant short silencing RNAs. PLoS One (2010) 0.94
Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland. FEMS Microbiol Lett (2013) 0.93
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Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Environ Microbiol (2007) 0.91
Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants. J Bacteriol (2012) 0.90
Identifying small interfering RNA loci from high-throughput sequencing data. Bioinformatics (2011) 0.89
RNA silencing of hydrogenase(-like) genes and investigation of their physiological roles in the green alga Chlamydomonas reinhardtii. Biochem J (2010) 0.87
An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs. PLoS One (2011) 0.86
Recently published Streptomyces genome sequences. Microb Biotechnol (2014) 0.86
Draft genome sequence of Pseudomonas syringae pathovar syringae strain FF5, causal agent of stem tip dieback disease on ornamental pear. J Bacteriol (2012) 0.86