Published in Proc Natl Acad Sci U S A on February 26, 2009
Group II introns: mobile ribozymes that invade DNA. Cold Spring Harb Perspect Biol (2011) 2.22
Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold. Plant Physiol (2011) 2.15
Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering. Mol Cell Proteomics (2010) 1.50
Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions. Plant Physiol (2011) 1.49
An organellar maturase associates with multiple group II introns. Proc Natl Acad Sci U S A (2010) 1.18
Transcriptomic signatures of ash (Fraxinus spp.) phloem. PLoS One (2011) 1.07
A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts. RNA (2012) 1.07
An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize. Proc Natl Acad Sci U S A (2013) 1.05
Ribonuclease III mechanisms of double-stranded RNA cleavage. Wiley Interdiscip Rev RNA (2013) 1.04
AtnMat2, a nuclear-encoded maturase required for splicing of group-II introns in Arabidopsis mitochondria. RNA (2009) 0.99
APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain. Plant Cell (2011) 0.99
Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps. Plant Cell (2012) 0.99
Arabidopsis mTERF15 is required for mitochondrial nad2 intron 3 splicing and functional complex I activity. PLoS One (2014) 0.90
Recruitment of a ribosomal release factor for light- and stress-dependent regulation of petB transcript stability in Arabidopsis chloroplasts. Plant Cell (2011) 0.87
Identification of differentially-expressed genes associated with pistil abortion in Japanese apricot by genome-wide transcriptional analysis. PLoS One (2012) 0.87
An mTERF domain protein functions in group II intron splicing in maize chloroplasts. Nucleic Acids Res (2014) 0.87
Mediated plastid RNA editing in plant immunity. PLoS Pathog (2013) 0.86
The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I. Plant Physiol (2014) 0.84
PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development. J Exp Bot (2012) 0.83
Complex RNA metabolism in the chloroplast: an update on the psbB operon. Planta (2012) 0.82
Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae). Genome Biol Evol (2016) 0.82
The role of reticulate evolution in creating innovation and complexity. Int J Evol Biol (2012) 0.80
Identification of a chloroplast ribonucleoprotein complex containing trans-splicing factors, intron RNA, and novel components. Mol Cell Proteomics (2013) 0.80
Optimization of Light-Harvesting Pigment Improves Photosynthetic Efficiency. Plant Physiol (2016) 0.77
Identification of Pentatricopeptide Repeat Proteins in the Model Organism Dictyostelium discoideum. Int J Genomics (2013) 0.77
A nuclear-encoded chloroplast protein harboring a single CRM domain plays an important role in the Arabidopsis growth and stress response. BMC Plant Biol (2014) 0.77
HIGH CHLOROPHYLL FLUORESCENCE145 Binds to and Stabilizes the psaA 5' UTR via a Newly Defined Repeat Motif in Embryophyta. Plant Cell (2015) 0.77
ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress. G3 (Bethesda) (2016) 0.76
Emerging Roles of RNA-Binding Proteins in Plant Growth, Development, and Stress Responses. Mol Cells (2016) 0.75
Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice. J Exp Bot (2016) 0.75
A Ribonucleoprotein Supercomplex Involved in trans-Splicing of Organelle Group II Introns. J Biol Chem (2016) 0.75
The pentatricopeptide repeat protein EMB2654 is essential for trans-splicing of a chloroplast small ribosomal subunit transcript. Plant Physiol (2016) 0.75
I-TASSER server for protein 3D structure prediction. BMC Bioinformatics (2008) 18.28
Comparative and functional anatomy of group II catalytic introns--a review. Gene (1989) 7.46
Template-based modeling and free modeling by I-TASSER in CASP7. Proteins (2007) 6.45
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet (2004) 5.51
Structural basis for the specificity of ubiquitin C-terminal hydrolases. EMBO J (1999) 2.79
RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. Plant Cell (2005) 2.68
HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. Plant Cell (2003) 2.57
Nuclear Mutants of Maize with Defects in Chloroplast Polysome Assembly Have Altered Chloroplast RNA Metabolism. Plant Cell (1993) 2.54
Crystal structure of a deubiquitinating enzyme (human UCH-L3) at 1.8 A resolution. EMBO J (1997) 2.29
Trans-splicing mutants of Chlamydomonas reinhardtii. Mol Gen Genet (1990) 2.27
Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors. Plant Cell (1997) 2.00
A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell (2006) 1.97
Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles. Biochem Soc Trans (2007) 1.96
Two nuclear mutations disrupt distinct pathways for targeting proteins to the chloroplast thylakoid. EMBO J (1995) 1.91
Nuclear gene iojap conditions a programmed change to ribosome-less plastids in Zea mays. Proc Natl Acad Sci U S A (1979) 1.86
A chloroplast-localized PPR protein required for plastid ribosome accumulation. Plant J (2003) 1.77
Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants. Nucleic Acids Res (1999) 1.73
Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts. EMBO J (2001) 1.57
CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin. RNA (2001) 1.50
Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover. Prog Nucleic Acid Res Mol Biol (2004) 1.47
Group II intron splicing factors derived by diversification of an ancient RNA-binding domain. EMBO J (2003) 1.46
A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis. Nucleic Acids Res (2008) 1.41
A factor related to pseudouridine synthases is required for chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. EMBO J (1999) 1.41
Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Plant Physiol (2006) 1.38
A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts. Plant Cell (2007) 1.34
Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. EMBO J (2001) 1.30
Group II introns: structure, folding and splicing mechanism. Biol Chem (2007) 1.27
The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana. Plant J (2008) 1.24
The CRM domain: an RNA binding module derived from an ancient ribosome-associated protein. RNA (2006) 1.22
A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas. Nucleic Acids Res (2006) 1.08
A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts. Plant Cell (2007) 1.07
Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts. RNA (2008) 0.98
A novel plant-specific family gene, ROOT PRIMORDIUM DEFECTIVE 1, is required for the maintenance of active cell proliferation. Plant Physiol (2006) 0.78
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS One (2008) 3.41
RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. Plant Cell (2005) 2.68
Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Plant Cell (2002) 2.48
Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol (2006) 2.45
PPDB, the Plant Proteomics Database at Cornell. Nucleic Acids Res (2008) 2.29
Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts. EMBO J (2009) 2.27
Consequences of membrane protein overexpression in Escherichia coli. Mol Cell Proteomics (2007) 2.11
Tuning Escherichia coli for membrane protein overexpression. Proc Natl Acad Sci U S A (2008) 2.11
The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Mol Cell Proteomics (2005) 2.01
A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell (2006) 1.97
A chloroplast-localized PPR protein required for plastid ribosome accumulation. Plant J (2003) 1.77
Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proc Natl Acad Sci U S A (2010) 1.76
Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts. Curr Opin Plant Biol (2006) 1.75
A scalable, GFP-based pipeline for membrane protein overexpression screening and purification. Protein Sci (2005) 1.75
Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics. Plant Cell (2005) 1.73
Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells. Mol Cell Proteomics (2008) 1.70
The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol Cell Biol (2008) 1.68
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. J Biol Chem (2003) 1.59
Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize. Plant Cell (2010) 1.58
Reconstruction of metabolic pathways, protein expression, and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly. Plant Physiol (2010) 1.51
Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering. Mol Cell Proteomics (2010) 1.50
Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions. Plant Physiol (2011) 1.49
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. J Biol Chem (2004) 1.49
Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts. Nucleic Acids Res (2011) 1.47
Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. RNA (2008) 1.47
Group II intron splicing factors derived by diversification of an ancient RNA-binding domain. EMBO J (2003) 1.46
Plastoglobules: versatile lipoprotein particles in plastids. Trends Plant Sci (2007) 1.44
ZmpTAC12 binds single-stranded nucleic acids and is essential for accumulation of the plastid-encoded polymerase complex in maize. New Phytol (2015) 1.42
A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis. Nucleic Acids Res (2008) 1.41
Expression of tetanus toxin Fragment C in tobacco chloroplasts. Nucleic Acids Res (2003) 1.40
Genetics and genomics of chloroplast biogenesis: maize as a model system. Trends Plant Sci (2004) 1.39
Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize. Plant J (2010) 1.38
Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Plant Physiol (2006) 1.38
A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts. Plant Cell (2007) 1.34
Retracted The pathogen-inducible nitric oxide synthase (iNOS) in plants is a variant of the P protein of the glycine decarboxylase complex. Cell (2003) 1.33
CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains. Plant Cell (2004) 1.32
RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing. Proc Natl Acad Sci U S A (2012) 1.32
Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis. Mol Cell Proteomics (2011) 1.29
Stepwise deamidation of ribonuclease A at five sites determined by top down mass spectrometry. Biochemistry (2006) 1.28
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism. Mol Cell Proteomics (2009) 1.27
Ribulose-1,5-bis-phosphate carboxylase/oxygenase accumulation factor1 is required for holoenzyme assembly in maize. Plant Cell (2012) 1.25
Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis. Plant Cell (2009) 1.24
A new approach for plant proteomics: characterization of chloroplast proteins of Arabidopsis thaliana by top-down mass spectrometry. Mol Cell Proteomics (2003) 1.24
The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol (2012) 1.23
The CRM domain: an RNA binding module derived from an ancient ribosome-associated protein. RNA (2006) 1.22
Maize mutants lacking chloroplast FtsY exhibit pleiotropic defects in the biogenesis of thylakoid membranes. Plant Cell (2003) 1.18
Cell-type-specific differentiation of chloroplasts in C4 plants. Trends Plant Sci (2009) 1.14
Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. Plant Cell (2006) 1.12
The Clp protease system; a central component of the chloroplast protease network. Biochim Biophys Acta (2010) 1.11
Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties. Plant Physiol (2004) 1.09
ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis. Plant Cell (2013) 1.09
A comprehensive analysis of the 14-3-3 interactome in barley leaves using a complementary proteomics and two-hybrid approach. Plant Physiol (2006) 1.09
Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Plant Physiol (2008) 1.07
A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo. Plant Cell (2013) 1.07
A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts. Plant Cell (2007) 1.07
A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts. RNA (2012) 1.07
Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low. Plant Mol Biol (2007) 1.06
An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize. Proc Natl Acad Sci U S A (2013) 1.05
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics. J Proteome Res (2012) 1.03
Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces. J Mol Biol (2005) 1.01
RNA processing and decay in plastids. Wiley Interdiscip Rev RNA (2013) 1.01
Deregulation of maize C4 photosynthetic development in a mesophyll cell-defective mutant. Plant Physiol (2008) 1.00
APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain. Plant Cell (2011) 0.99
Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis. Plant Physiol (2012) 0.98
Correlation of mRNA and protein abundance in the developing maize leaf. Plant J (2014) 0.98
Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts. RNA (2008) 0.98
RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression. Proc Natl Acad Sci U S A (2012) 0.98
POGs/PlantRBP: a resource for comparative genomics in plants. Nucleic Acids Res (2006) 0.97
ABC1K atypical kinases in plants: filling the organellar kinase void. Trends Plant Sci (2012) 0.96
Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis. Plant Cell (2011) 0.95
The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA. Plant J (2012) 0.95
Effects of SecE depletion on the inner and outer membrane proteomes of Escherichia coli. J Bacteriol (2008) 0.94
Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway. Plant Cell (2013) 0.94