Published in Phys Rev Lett on February 13, 2009
A synchronized quorum of genetic clocks. Nature (2010) 5.47
Microfluidic devices for measuring gene network dynamics in single cells. Nat Rev Genet (2009) 2.52
Efficient modeling, simulation and coarse-graining of biological complexity with NFsim. Nat Methods (2010) 2.24
A sensing array of radically coupled genetic 'biopixels'. Nature (2011) 2.18
SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium. Science (2015) 1.74
Queueing up for enzymatic processing: correlated signaling through coupled degradation. Mol Syst Biol (2011) 1.47
A comparative analysis of synthetic genetic oscillators. J R Soc Interface (2010) 1.41
Programming an in vitro DNA oscillator using a molecular networking strategy. Mol Syst Biol (2011) 1.33
Noise in biology. Rep Prog Phys (2014) 1.09
Bottom-up construction of in vitro switchable memories. Proc Natl Acad Sci U S A (2012) 1.01
Tuning the dials of Synthetic Biology. Microbiology (2013) 1.00
Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri. PLoS Comput Biol (2010) 0.96
The pedestrian watchmaker: genetic clocks from engineered oscillators. FEBS Lett (2009) 0.95
Cytokine combination therapy prediction for bone remodeling in tissue engineering based on the intracellular signaling pathway. Biomaterials (2012) 0.95
Genetic Circuits in Salmonella typhimurium. ACS Synth Biol (2012) 0.93
Engineered temperature compensation in a synthetic genetic clock. Proc Natl Acad Sci U S A (2014) 0.91
Stochastic delay accelerates signaling in gene networks. PLoS Comput Biol (2011) 0.90
Dynamical quorum-sensing in oscillators coupled through an external medium. Physica D (2012) 0.90
Landscape, flux, correlation, resonance, coherence, stability, and key network wirings of stochastic circadian oscillation. Biophys J (2011) 0.89
Systems modeling of anti-apoptotic pathways in prostate cancer: psychological stress triggers a synergism pattern switch in drug combination therapy. PLoS Comput Biol (2013) 0.89
Mammalian synthetic biology: emerging medical applications. J R Soc Interface (2015) 0.86
Microfluidic oscillators with widely tunable periods. Lab Chip (2013) 0.86
Synchronization of degrade-and-fire oscillations via a common activator. Phys Rev Lett (2014) 0.82
Sparsity and compressed coding in sensory systems. PLoS Comput Biol (2014) 0.82
Corepressive interaction and clustering of degrade-and-fire oscillators. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.82
Modeling delay in genetic networks: from delay birth-death processes to delay stochastic differential equations. J Chem Phys (2014) 0.81
Integrating genomics and proteomics data to predict drug effects using binary linear programming. PLoS One (2014) 0.81
Transcriptional delay stabilizes bistable gene networks. Phys Rev Lett (2013) 0.80
Time Delayed Causal Gene Regulatory Network Inference with Hidden Common Causes. PLoS One (2015) 0.80
Spatiotemporal dynamics of distributed synthetic genetic circuits. Physica D (2016) 0.80
High-order dynamic Bayesian Network learning with hidden common causes for causal gene regulatory network. BMC Bioinformatics (2015) 0.79
Robust dynamical pattern formation from a multifunctional minimal genetic circuit. BMC Syst Biol (2010) 0.79
A protein turnover signaling motif controls the stimulus-sensitivity of stress response pathways. PLoS Comput Biol (2013) 0.79
Typical trajectories of coupled degrade-and-fire oscillators: from dispersed populations to massive clustering. J Math Biol (2013) 0.78
Effects of cell cycle noise on excitable gene circuits. Phys Biol (2016) 0.78
Delays induce novel stochastic effects in negative feedback gene circuits. Biophys J (2014) 0.77
Sources of Variability in a Synthetic Gene Oscillator. PLoS Comput Biol (2015) 0.76
Elements of biological oscillations in time and space. Nat Struct Mol Biol (2016) 0.75
Multiple independent autonomous hydraulic oscillators driven by a common gravity head. Nat Commun (2015) 0.75
Promoters Architecture-Based Mechanism for Noise-Induced Oscillations in a Single-Gene Circuit. PLoS One (2016) 0.75
Stability of Systems with Stochastic Delays and Applications to Genetic Regulatory Networks. SIAM J Appl Dyn Syst (2016) 0.75
Synchronized DNA cycling across a bacterial population. Nat Genet (2017) 0.75
Stochastic gene expression in a single cell. Science (2002) 34.54
Regulation of noise in the expression of a single gene. Nat Genet (2002) 14.93
Real-time kinetics of gene activity in individual bacteria. Cell (2005) 11.08
Noise in gene expression: origins, consequences, and control. Science (2005) 9.64
Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys J (2001) 7.52
A fast, robust and tunable synthetic gene oscillator. Nature (2008) 6.85
Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science (2008) 4.45
Circadian clocks limited by noise. Nature (2000) 4.39
Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays. Curr Biol (2003) 3.54
Computational approaches to cellular rhythms. Nature (2002) 3.40
Dynamics of encoding in a population of neurons. J Gen Physiol (1972) 3.34
Delay-induced stochastic oscillations in gene regulation. Proc Natl Acad Sci U S A (2005) 2.47
Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations. Proc Natl Acad Sci U S A (2008) 2.43
Synthetic gene network for entraining and amplifying cellular oscillations. Phys Rev Lett (2002) 2.24
Role of feedback inhibition in stabilizing the classical operon. J Theor Biol (1982) 1.66
Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations. Philos Trans A Math Phys Eng Sci (2006) 1.36
Solution moment stability in stochastic differential delay equations. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics (1995) 0.96
Time lag in a model of a biochemical reaction sequence with end product inhibition. J Theor Biol (1977) 0.95
A fast, robust and tunable synthetic gene oscillator. Nature (2008) 6.85
A synchronized quorum of genetic clocks. Nature (2010) 5.47
Prediction and measurement of an autoregulatory genetic module. Proc Natl Acad Sci U S A (2003) 5.07
Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling. Proc Natl Acad Sci U S A (2003) 4.89
A bottom-up approach to gene regulation. Nature (2006) 4.03
Metabolic gene regulation in a dynamically changing environment. Nature (2008) 3.78
Origins of extrinsic variability in eukaryotic gene expression. Nature (2005) 3.18
Microfluidic devices for measuring gene network dynamics in single cells. Nat Rev Genet (2009) 2.52
Delay-induced stochastic oscillations in gene regulation. Proc Natl Acad Sci U S A (2005) 2.47
Synchronizing genetic relaxation oscillators by intercell signaling. Proc Natl Acad Sci U S A (2002) 2.29
A sensing array of radically coupled genetic 'biopixels'. Nature (2011) 2.18
Contact tracing and epidemics control in social networks. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 1.81
Monitoring dynamics of single-cell gene expression over multiple cell cycles. Mol Syst Biol (2005) 1.76
Biomechanical ordering of dense cell populations. Proc Natl Acad Sci U S A (2008) 1.69
Dynamics of single-cell gene expression. Mol Syst Biol (2006) 1.69
Biochar and microbial signaling: production conditions determine effects on microbial communication. Environ Sci Technol (2013) 1.65
Queueing up for enzymatic processing: correlated signaling through coupled degradation. Mol Syst Biol (2011) 1.47
Swarming and swirling in self-propelled polar granular rods. Phys Rev Lett (2008) 1.45
Human-like external function of the foot, and fully upright gait, confirmed in the 3.66 million year old Laetoli hominin footprints by topographic statistics, experimental footprint-formation and computer simulation. J R Soc Interface (2011) 1.44
A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae. Mol Syst Biol (2007) 1.42
Mapping the environmental fitness landscape of a synthetic gene circuit. PLoS Comput Biol (2012) 1.31
Transient dynamics of genetic regulatory networks. Biophys J (2007) 1.19
Pattern formation of microtubules and motors: inelastic interaction of polar rods. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.18
Holocene footprints in Namibia: the influence of substrate on footprint variability. Am J Phys Anthropol (2013) 1.18
Evolutionary fates within a microbial population highlight an essential role for protein folding during natural selection. Mol Syst Biol (2010) 1.14
Streaming instability in growing cell populations. Phys Rev Lett (2010) 1.12
Correlation resonance generated by coupled enzymatic processing. Biophys J (2010) 1.10
Library of synthetic transcriptional AND gates built with split T7 RNA polymerase mutants. Proc Natl Acad Sci U S A (2013) 1.10
Phenotypic variability of growing cellular populations. Proc Natl Acad Sci U S A (2007) 1.07
Yeast dynamically modify their environment to achieve better mating efficiency. Sci Signal (2011) 1.01
Translational cross talk in gene networks. Biophys J (2013) 1.00
Surviving the bottleneck: transmission mutants and the evolution of microbial populations. Genetics (2008) 1.00
Antagonistic gene transcripts regulate adaptation to new growth environments. Proc Natl Acad Sci U S A (2011) 0.99
Cell cycle-dependent variations in protein concentration. Nucleic Acids Res (2009) 0.97
Swirling motion in a system of vibrated elongated particles. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.96
Modeling synthetic gene oscillators. Math Biosci (2012) 0.96
Circadian rhythms in Neurospora crassa: dynamics of the clock component frequency visualized using a fluorescent reporter. Fungal Genet Biol (2010) 0.96
The pedestrian watchmaker: genetic clocks from engineered oscillators. FEBS Lett (2009) 0.95
Statistics of cellular signal transduction as a race to the nucleus by multiple random walkers in compartment/phosphorylation space. Proc Natl Acad Sci U S A (2006) 0.93
Vacuum-assisted cell loading enables shear-free mammalian microfluidic culture. Lab Chip (2012) 0.93
Genetic Circuits in Salmonella typhimurium. ACS Synth Biol (2012) 0.93
Anisotropy-driven dynamics in vibrated granular rods. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.91
Engineered temperature compensation in a synthetic genetic clock. Proc Natl Acad Sci U S A (2014) 0.91
Stochastic delay accelerates signaling in gene networks. PLoS Comput Biol (2011) 0.90
Effective temperature in stochastic kinetics and gene networks. Biophys J (2006) 0.90
Dual delayed feedback provides sensitivity and robustness to the NF-κB signaling module. PLoS Comput Biol (2013) 0.90
A molecular noise generator. Phys Biol (2008) 0.89
In Vivo Gene Expression Dynamics of Tumor-Targeted Bacteria. ACS Synth Biol (2012) 0.89
The evolution of compliance in the human lateral mid-foot. Proc Biol Sci (2013) 0.89
Partially fluidized shear granular flows: continuum theory and molecular dynamics simulations. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.88
Dynamics-based sequential memory: winnerless competition of patterns. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.88
Distributed classifier based on genetically engineered bacterial cell cultures. ACS Synth Biol (2014) 0.88
Theory of self-assembly of microtubules and motors. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.87
Imaging gene expression: tiny signals make a big noise. Nat Chem Biol (2006) 0.84
Phenotypic impact of regulatory noise in cellular stress-response pathways. Syst Synth Biol (2010) 0.84
Modular, multi-input transcriptional logic gating with orthogonal LacI/GalR family chimeras. ACS Synth Biol (2014) 0.83
In-silico patterning of vascular mesenchymal cells in three dimensions. PLoS One (2011) 0.83
Translating the noise. Nat Genet (2002) 0.83
Athermal dynamics of strongly coupled stochastic three-state oscillators. Phys Rev Lett (2008) 0.83
Buckling instability in ordered bacterial colonies. Phys Biol (2011) 0.83
Corepressive interaction and clustering of degrade-and-fire oscillators. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.82
Overpowering the component problem. Nat Biotechnol (2009) 0.82
Effect of noise on solid-to-liquid transition in small granular systems under shear. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.82
Continuum theory of partially fluidized granular flows. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.81
Fast stochastic algorithm for simulating evolutionary population dynamics. Bioinformatics (2012) 0.81
Coherent activation of a synthetic mammalian gene network. Syst Synth Biol (2009) 0.81
Transcriptional delay stabilizes bistable gene networks. Phys Rev Lett (2013) 0.80
Evolution of a single gene highlights the complexity underlying molecular descriptions of fitness. Chaos (2010) 0.80
Nonlocal rheological properties of granular flows near a jamming limit. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.80
Continuum modeling of clustering of myxobacteria. New J Phys (2013) 0.79
Model of coarsening and vortex formation in vibrated granular rods. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.79
Measuring competitive fitness in dynamic environments. J Phys Chem B (2013) 0.79
Recent advances in single-cell studies of gene regulation. Curr Opin Biotechnol (2011) 0.78
Order parameter description of stationary partially fluidized shear granular flows. Phys Rev Lett (2003) 0.78
Systems biology: genome rewired. Nature (2008) 0.78