Published in Curr Biol on August 19, 2003
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Intronic delay is essential for oscillatory expression in the segmentation clock. Proc Natl Acad Sci U S A (2011) 1.37
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Delayed coupling theory of vertebrate segmentation. HFSP J (2008) 1.11
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A delay stochastic process with applications in molecular biology. J Math Biol (2008) 0.93
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Modeling and dynamical analysis of virus-triggered innate immune signaling pathways. PLoS One (2012) 0.90
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Understanding the dynamic behavior of genetic regulatory networks by functional decomposition. Curr Genomics (2006) 0.89
TABASCO: A single molecule, base-pair resolved gene expression simulator. BMC Bioinformatics (2007) 0.88
Dynamic telomerase gene suppression via network effects of GSK3 inhibition. PLoS One (2009) 0.88
Modeling the role of p53 pulses in DNA damage- induced cell death decision. BMC Bioinformatics (2009) 0.88
Network representations and methods for the analysis of chemical and biochemical pathways. Mol Biosyst (2013) 0.87
Delayed protein synthesis reduces the correlation between mRNA and protein fluctuations. Biophys J (2012) 0.86
A spatio-temporal model of Notch signalling in the zebrafish segmentation clock: conditions for synchronised oscillatory dynamics. PLoS One (2011) 0.86
Power-rate synchronization of coupled genetic oscillators with unbounded time-varying delay. Cogn Neurodyn (2015) 0.86
Coherent Pattern Prediction in Swarms of Delay-Coupled Agents. IEEE Trans Robot (2012) 0.86
Spatiotemporal oscillations of Notch1, Dll1 and NICD are coordinated across the mouse PSM. Development (2014) 0.85
On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems. BMC Syst Biol (2009) 0.85
Somitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock protein. PLoS Comput Biol (2010) 0.85
Inference on periodicity of circadian time series. Biostatistics (2013) 0.84
Modelling the Delta1/Notch1 pathway: in search of the mediator(s) of neural stem cell differentiation. PLoS One (2011) 0.84
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Elucidating the digital control mechanism for DNA damage repair with the p53-Mdm2 system: single cell data analysis and ensemble modelling. J R Soc Interface (2006) 0.84
Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays. Proc Natl Acad Sci U S A (2015) 0.84
Predicted functions of MdmX in fine-tuning the response of p53 to DNA damage. PLoS Comput Biol (2010) 0.83
Mathematical models for the Notch and Wnt signaling pathways and the crosstalk between them during somitogenesis. Theor Biol Med Model (2013) 0.83
The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub. Development (2012) 0.83
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microRNA input into a neural ultradian oscillator controls emergence and timing of alternative cell states. Nat Commun (2014) 0.83
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Mir-125a-5p-mediated regulation of Lfng is essential for the avian segmentation clock. Dev Cell (2013) 0.81
Sensitivity analysis of dynamic biological systems with time-delays. BMC Bioinformatics (2010) 0.81
From dynamic expression patterns to boundary formation in the presomitic mesoderm. PLoS Comput Biol (2012) 0.81
Stochastic modeling and simulation of the p53-MDM2/MDMX loop. J Comput Biol (2009) 0.81
Stochastic modelling of biochemical systems of multi-step reactions using a simplified two-variable model. BMC Syst Biol (2013) 0.80
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Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock. Elife (2016) 0.79
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A delay model for noise-induced bi-directional switching. Nonlinearity (2009) 0.79
Bifurcation analysis informs Bayesian inference in the Hes1 feedback loop. BMC Syst Biol (2009) 0.79
MiR-192-Mediated Positive Feedback Loop Controls the Robustness of Stress-Induced p53 Oscillations in Breast Cancer Cells. PLoS Comput Biol (2015) 0.79
Intercellular delay regulates the collective period of repressively coupled gene regulatory oscillator networks. IEEE Trans Automat Contr (2014) 0.78
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Chemical memory reactions induced bursting dynamics in gene expression. PLoS One (2013) 0.78
Modeling the zebrafish segmentation clock's gene regulatory network constrained by expression data suggests evolutionary transitions between oscillating and nonoscillating transcription. Genetics (2014) 0.77
Delays induce novel stochastic effects in negative feedback gene circuits. Biophys J (2014) 0.77
Spatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves. Development (2014) 0.77
Design of regulation and dynamics in simple biochemical pathways. J Math Biol (2010) 0.77
Timing by rhythms: Daily clocks and developmental rulers. Dev Growth Differ (2015) 0.76
Dynamic properties of the segmentation clock mediated by microRNA. Int J Clin Exp Pathol (2015) 0.76
Practical lessons from theoretical models about the somitogenesis. Gene Regul Syst Bio (2007) 0.76
Neural fate decisions mediated by combinatorial regulation of Hes1 and miR-9. J Biol Phys (2015) 0.76
Mean field analysis of a spatial stochastic model of a gene regulatory network. J Math Biol (2014) 0.76
Stochastic oscillations induced by intrinsic fluctuations in a self-repressing gene. Biophys J (2014) 0.76