Published in Proc Natl Acad Sci U S A on March 18, 2009
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Reconstruction of metabolic pathways, protein expression, and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly. Plant Physiol (2010) 1.51
Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering. Mol Cell Proteomics (2010) 1.50
Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions. Plant Physiol (2011) 1.49
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol (2012) 1.38
Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Proc Natl Acad Sci U S A (2012) 1.37
Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins? Nucleic Acids Res (2011) 1.32
An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize. Proc Natl Acad Sci U S A (2013) 1.05
Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps. Plant Cell (2012) 0.99
Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. J Exp Bot (2011) 0.95
The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell (2013) 0.93
The Role of Polypyrimidine Tract-Binding Proteins and Other hnRNP Proteins in Plant Splicing Regulation. Front Plant Sci (2012) 0.90
Cytidine deaminase motifs within the DYW domain of two pentatricopeptide repeat-containing proteins are required for site-specific chloroplast RNA editing. J Biol Chem (2014) 0.90
Two RNA recognition motif-containing proteins are plant mitochondrial editing factors. Nucleic Acids Res (2015) 0.87
Dynamics of Chloroplast Translation during Chloroplast Differentiation in Maize. PLoS Genet (2016) 0.87
Function of PPR proteins in plastid gene expression. RNA Biol (2013) 0.85
RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering. Plant Physiol (2015) 0.82
Mitochondrial RNA editing PPR proteins can tolerate protein tags at E as well as at DYW domain termini. Front Plant Sci (2014) 0.81
Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana. J Biol Chem (2015) 0.81
Organelle RNA recognition motif-containing (ORRM) proteins are plastid and mitochondrial editing factors in Arabidopsis. Plant Signal Behav (2016) 0.77
Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues. Mol Genet Genomics (2015) 0.76
RNA Editing and Its Molecular Mechanism in Plant Organelles. Genes (Basel) (2016) 0.76
Organellar Gene Expression and Acclimation of Plants to Environmental Stress. Front Plant Sci (2017) 0.75
Crystal structures of the Arabidopsis thaliana organellar RNA editing factors MORF1 and MORF9. Nucleic Acids Res (2017) 0.75
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
Messenger-RNA-binding proteins and the messages they carry. Nat Rev Mol Cell Biol (2002) 8.81
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell (2004) 6.52
A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature (2005) 3.33
Arabidopsis gene knockout: phenotypes wanted. Curr Opin Plant Biol (2001) 2.54
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res (2002) 2.44
Directed disruption of the tobacco ndhB gene impairs cyclic electron flow around photosystem I. Proc Natl Acad Sci U S A (1998) 2.34
Identification of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes. EMBO J (1998) 2.34
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Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. Proc Natl Acad Sci U S A (2007) 2.01
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Chlororespiration and cyclic electron flow around PSI during photosynthesis and plant stress response. Plant Cell Environ (2007) 1.95
CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. Plant J (2008) 1.93
A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. Nucleic Acids Res (2007) 1.62
New subunits NDH-M, -N, and -O, encoded by nuclear genes, are essential for plastid Ndh complex functioning in higher plants. Plant Cell (2004) 1.50
Editing of plastid RNA in Arabidopsis thaliana ecotypes. Plant J (2005) 1.48
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Cyclic electron flow around photosystem I in C(3) plants. In vivo control by the redox state of chloroplasts and involvement of the NADH-dehydrogenase complex. Plant Physiol (2002) 1.46
A family of RRM-type RNA-binding proteins specific to plant mitochondria. Proc Natl Acad Sci U S A (2002) 1.32
Pyrosequencing: a tool for DNA sequencing analysis. Methods Mol Biol (2004) 1.32
A single nuclear gene specifies the abundance and extent of RNA editing of a plant mitochondrial transcript. Nucleic Acids Res (1992) 1.15
A heterologous maize rpoB editing site is recognized by transgenic tobacco chloroplasts. Mol Cell Biol (1997) 1.12
Chloroplast RNA-binding and pentatricopeptide repeat proteins. Biochem Soc Trans (2004) 1.10
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Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs. FEBS Lett (1999) 1.00
Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma. J Biol Chem (2001) 1.00
Two RNA editing sites with cis-acting elements of moderate sequence identity are recognized by an identical site-recognition protein in tobacco chloroplasts. Nucleic Acids Res (2007) 0.99
Three types of nuclear genes encoding chloroplast RNA-binding proteins (cp29, cp31 and cp33) are present in Arabidopsis thaliana: presence of cp31 in chloroplasts and its homologue in nuclei/cytoplasms. Plant Mol Biol (1995) 0.98
Domains required for nucleic acid binding activities in chloroplast ribonucleoproteins. Nucleic Acids Res (1992) 0.98
Characterization of protein-binding to the spinach chloroplast psbA mRNA 5' untranslated region. Nucleic Acids Res (1998) 0.97
Edited transcripts compete with unedited mRNAs for trans-acting editing factors in higher plant chloroplasts. Gene (2001) 0.95
Nucleic acid-binding specificities of tobacco chloroplast ribonucleoproteins. Nucleic Acids Res (1991) 0.93
ABA-responsive RNA-binding proteins are involved in chloroplast and stromule function in Arabidopsis seedlings. Planta (2006) 0.88
RNA-binding proteins of 37/38 kDa bind specifically to the barley chloroplast psbA 3'-end untranslated RNA. Plant Mol Biol (1996) 0.84
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A (2002) 5.48
NUMTs in sequenced eukaryotic genomes. Mol Biol Evol (2004) 4.10
Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases. Nature (2005) 2.35
A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol Biol Evol (2004) 2.32
Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell (2009) 2.27
Plastid signalling to the nucleus and beyond. Trends Plant Sci (2008) 2.22
On the expansion of the pentatricopeptide repeat gene family in plants. Mol Biol Evol (2008) 2.15
DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis. Annu Rev Plant Biol (2009) 2.12
A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis. Cell (2008) 2.10
CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. Plant J (2008) 1.93
Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution. Mol Biol Evol (2002) 1.79
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell (2009) 1.78
Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. J Biol Chem (2004) 1.76
The metal ion transporter IRT1 is necessary for iron homeostasis and efficient photosynthesis in Arabidopsis thaliana. Plant J (2002) 1.76
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell (2007) 1.75
Arabidopsis GIGANTEA protein is post-transcriptionally regulated by light and dark. FEBS Lett (2006) 1.69
Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2005) 1.69
The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol Cell Biol (2008) 1.68
SPL8, an SBP-box gene that affects pollen sac development in Arabidopsis. Plant Cell (2003) 1.62
Role of plastid protein phosphatase TAP38 in LHCII dephosphorylation and thylakoid electron flow. PLoS Biol (2010) 1.60
The role of [Delta]1-pyrroline-5-carboxylate dehydrogenase in proline degradation. Plant Cell (2004) 1.59
Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors. Plant Cell (2004) 1.59
Arabidopsis STN7 kinase provides a link between short- and long-term photosynthetic acclimation. Plant Cell (2009) 1.58
An improved prediction of chloroplast proteins reveals diversities and commonalities in the chloroplast proteomes of Arabidopsis and rice. Gene (2004) 1.56
Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night. Plant Physiol (2009) 1.53
Plastid signalling to the nucleus: messengers still lost in the mists? Trends Genet (2009) 1.50
Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiol (2008) 1.48
Editing of plastid RNA in Arabidopsis thaliana ecotypes. Plant J (2005) 1.48
NUPTs in sequenced eukaryotes and their genomic organization in relation to NUMTs. Mol Biol Evol (2004) 1.47
Redox regulation of the NPR1-TGA1 system of Arabidopsis thaliana by nitric oxide. Plant Cell (2010) 1.46
Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proc Natl Acad Sci U S A (2011) 1.44
Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis. Plant Cell (2009) 1.41
The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth. Plant J (2008) 1.40
Approaches to defining dual-targeted proteins in Arabidopsis. Plant J (2008) 1.37
Interorganellar communication. Curr Opin Plant Biol (2007) 1.36
Structure, function and regulation of plant photosystem I. Biochim Biophys Acta (2007) 1.34
The plant-specific ssDNA binding protein OSB1 is involved in the stoichiometric transmission of mitochondrial DNA in Arabidopsis. Plant Cell (2006) 1.34
A family of RRM-type RNA-binding proteins specific to plant mitochondria. Proc Natl Acad Sci U S A (2002) 1.32
Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins? Nucleic Acids Res (2011) 1.32
Nuclear insertions of organellar DNA can create novel patches of functional exon sequences. Trends Genet (2007) 1.31
Two exoribonucleases act sequentially to process mature 3'-ends of atp9 mRNAs in Arabidopsis mitochondria. J Biol Chem (2004) 1.31
Cytoplasmic N-terminal protein acetylation is required for efficient photosynthesis in Arabidopsis. Plant Cell (2003) 1.30
Covariations in the nuclear chloroplast transcriptome reveal a regulatory master-switch. EMBO Rep (2003) 1.29
The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins. Plant Cell (2003) 1.29
PGRL1 is the elusive ferredoxin-plastoquinone reductase in photosynthetic cyclic electron flow. Mol Cell (2013) 1.27
The evolution of chloroplast RNA editing. Mol Biol Evol (2006) 1.24
The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana. Plant J (2008) 1.24
Mutants for photosystem I subunit D of Arabidopsis thaliana: effects on photosynthesis, photosystem I stability and expression of nuclear genes for chloroplast functions. Plant J (2004) 1.23
Plastocyanin is indispensable for photosynthetic electron flow in Arabidopsis thaliana. J Biol Chem (2003) 1.22
Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants. Genome Res (2005) 1.22
Complex chloroplast RNA metabolism: just debugging the genetic programme? BMC Biol (2008) 1.21
Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis. Plant Physiol (2008) 1.20
An organellar maturase associates with multiple group II introns. Proc Natl Acad Sci U S A (2010) 1.18
Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants. Plant Physiol (2006) 1.16
Evolutionary diversification of mitochondrial proteomes: implications for human disease. Trends Genet (2003) 1.11
The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly. Plant Cell (2010) 1.11
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell (2009) 1.10
Mutation of the pentatricopeptide repeat-SMR protein SVR7 impairs accumulation and translation of chloroplast ATP synthase subunits in Arabidopsis thaliana. J Plant Res (2012) 1.08
In-depth analysis of the distinctive effects of norflurazon implies that tetrapyrrole biosynthesis, organellar gene expression and ABA cooperate in the GUN-type of plastid signalling. Physiol Plant (2009) 1.08
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J Biol Chem (2003) 1.08
Arabidopsis CURVATURE THYLAKOID1 proteins modify thylakoid architecture by inducing membrane curvature. Plant Cell (2013) 1.07
OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1. Plant J (2011) 1.06
Mitochondrial biogenesis and function in Arabidopsis. Arabidopsis Book (2008) 1.06
Dynamics of reversible protein phosphorylation in thylakoids of flowering plants: the roles of STN7, STN8 and TAP38. Biochim Biophys Acta (2010) 1.06
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation. Plant Cell (2009) 1.06
Root phloem-specific expression of the plasma membrane amino acid proton co-transporter AAP3. J Exp Bot (2004) 1.05
Chloroplast proteins without cleavable transit peptides: rare exceptions or a major constituent of the chloroplast proteome? Mol Plant (2009) 1.05
Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination. Plant Physiol (2012) 1.05
Nuclear photosynthetic gene expression is synergistically modulated by rates of protein synthesis in chloroplasts and mitochondria. Plant Cell (2006) 1.05
Mutants, overexpressors, and interactors of Arabidopsis plastocyanin isoforms: revised roles of plastocyanin in photosynthetic electron flow and thylakoid redox state. Mol Plant (2008) 0.99
Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps. Plant Cell (2012) 0.99
The cytoskeleton and the peroxisomal-targeted snowy cotyledon3 protein are required for chloroplast development in Arabidopsis. Plant Cell (2010) 0.98
Arabidopsis chloroplast quantitative editotype. FEBS Lett (2013) 0.98
Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles. Mol Plant (2010) 0.96
Whirly1 in chloroplasts associates with intron containing RNAs and rarely co-localizes with nucleoids. Planta (2010) 0.96
Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. J Exp Bot (2011) 0.95
The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA. Plant J (2012) 0.95
Knock-out of the genes coding for the Rieske protein and the ATP-synthase delta-subunit of Arabidopsis. Effects on photosynthesis, thylakoid protein composition, and nuclear chloroplast gene expression. Plant Physiol (2003) 0.95
Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth and development. Plant J (2012) 0.93
Single and double knockouts of the genes for photosystem I subunits G, K, and H of Arabidopsis. Effects on photosystem I composition, photosynthetic electron flow, and state transitions. Plant Physiol (2002) 0.93
Effects of reduced chloroplast gene copy number on chloroplast gene expression in maize. Plant Physiol (2012) 0.93
Arabidopsis plants lacking PsbQ and PsbR subunits of the oxygen-evolving complex show altered PSII super-complex organization and short-term adaptive mechanisms. Plant J (2013) 0.93
The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell (2013) 0.93
A RAD52-like single-stranded DNA binding protein affects mitochondrial DNA repair by recombination. Plant J (2012) 0.92
Optimizing photosynthesis under fluctuating light: the role of the Arabidopsis STN7 kinase. Plant Signal Behav (2010) 0.92
Structure and dynamics of thylakoids in land plants. J Exp Bot (2014) 0.92
A stable LHCII-PSI aggregate and suppression of photosynthetic state transitions in the psae1-1 mutant of Arabidopsis thaliana. Planta (2002) 0.92
RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast. Nucleic Acids Res (2012) 0.92
Phosphorylation site mapping of soluble proteins: bioinformatical filtering reveals potential plastidic phosphoproteins in Arabidopsis thaliana. Planta (2009) 0.92
Eukaryotic genome evolution: rearrangement and coevolution of compartmentalized genetic information. Philos Trans R Soc Lond B Biol Sci (2003) 0.92
The E subunit of photosystem I is not essential for linear electron flow and photoautotrophic growth in Arabidopsis thaliana. Planta (2007) 0.91