Published in Cell Cycle on April 26, 2009
The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat Rev Genet (2009) 4.19
PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters. Nucleic Acids Res (2011) 1.56
Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes. Nat Struct Mol Biol (2011) 1.51
A chromatin-based mechanism for limiting divergent noncoding transcription. Cell (2014) 1.04
Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription. Nucleic Acids Res (2010) 0.97
RNA exosome depletion reveals transcription upstream of active human promoters. Science (2008) 6.80
Insights into hominid evolution from the gorilla genome sequence. Nature (2012) 4.12
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genet (2006) 3.53
Great ape genetic diversity and population history. Nature (2013) 2.95
SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells. Nat Struct Mol Biol (2008) 2.73
Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation. Mol Cell Biol (2002) 2.58
THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell (2008) 2.58
Interaction profiling identifies the human nuclear exosome targeting complex. Mol Cell (2011) 2.56
The bonobo genome compared with the chimpanzee and human genomes. Nature (2012) 2.49
The exosome: a multipurpose RNA-decay machine. Trends Biochem Sci (2008) 2.40
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics (2005) 2.34
Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality. Nat Struct Mol Biol (2013) 2.11
The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L. EMBO J (2010) 2.07
CoaSim: a flexible environment for simulating genetic data under coalescent models. BMC Bioinformatics (2005) 1.96
Crosstalk between mRNA 3' end processing and transcription initiation. Mol Cell (2010) 1.89
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection. Genome Res (2011) 1.88
A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. Proc Natl Acad Sci U S A (2006) 1.85
A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo. Mol Cell (2008) 1.74
Origins and activities of the eukaryotic exosome. J Cell Sci (2009) 1.68
Whole genome association mapping by incompatibilities and local perfect phylogenies. BMC Bioinformatics (2006) 1.68
The human cap-binding complex is functionally connected to the nuclear RNA exosome. Nat Struct Mol Biol (2013) 1.67
Age effects on pain thresholds, temporal summation and spatial summation of heat and pressure pain. Pain (2005) 1.62
Dramatically improved RNA in situ hybridization signals using LNA-modified probes. RNA (2005) 1.62
SOAPindel: efficient identification of indels from short paired reads. Genome Res (2012) 1.59
Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proc Natl Acad Sci U S A (2009) 1.57
The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Mol Biol Evol (2006) 1.57
PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters. Nucleic Acids Res (2011) 1.56
Ancestral population genomics: the coalescent hidden Markov model approach. Genetics (2009) 1.54
The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res (2011) 1.53
RNA decay machines: the exosome. Biochim Biophys Acta (2013) 1.51
Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain. Proc Natl Acad Sci U S A (2006) 1.51
Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes. Nat Struct Mol Biol (2011) 1.51
Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J (2007) 1.51
Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation. Mol Cell (2008) 1.43
Localization of nuclear retained mRNAs in Saccharomyces cerevisiae. RNA (2003) 1.40
CBC-ARS2 stimulates 3'-end maturation of multiple RNA families and favors cap-proximal processing. Nat Struct Mol Biol (2013) 1.38
Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA. EMBO J (2013) 1.37
Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model. PLoS Genet (2011) 1.37
Quality control of mRNP in the nucleus. Chromosoma (2008) 1.34
The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II. Mol Cell (2010) 1.31
Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genet (2008) 1.29
Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata. Mol Biol Evol (2003) 1.25
Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet (2010) 1.24
A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species. PLoS Genet (2012) 1.23
The eukaryotic RNA exosome: same scaffold but variable catalytic subunits. RNA Biol (2011) 1.20
Formation of export-competent mRNP: escaping nuclear destruction. Curr Opin Cell Biol (2005) 1.18
Nuclear quality control of RNA polymerase II transcripts. Wiley Interdiscip Rev RNA (2011) 1.16
Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels. Biotechniques (2012) 1.15
Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata. Genetics (2003) 1.14
Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus. Genet Res (2003) 1.13
Overlapping pathways dictate termination of RNA polymerase II transcription. Biochimie (2007) 1.12
Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Mol Ecol (2006) 1.10
The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer (2004) 1.09
Genomic determinants of protein evolution and polymorphism in Arabidopsis. Genome Biol Evol (2011) 1.09
Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Mol Cell (2012) 1.07
Local phylogeny mapping of quantitative traits: higher accuracy and better ranking than single-marker association in genomewide scans. Genetics (2008) 1.07
Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants. RNA (2008) 1.05
Expression of distinct self-incompatibility specificities in Arabidopsis thaliana. Genetics (2009) 1.02
Assembly of an export-competent mRNP is needed for efficient release of the 3'-end processing complex after polyadenylation. Mol Cell Biol (2009) 1.01
mRNP quality control goes regulatory. Trends Genet (2011) 0.99
Promoter-proximal polyadenylation sites reduce transcription activity. Genes Dev (2012) 0.98
The RNA exosome component hRrp6 is a target for 5-fluorouracil in human cells. Mol Cancer Res (2008) 0.97
The T body, a new cytoplasmic RNA granule in Saccharomyces cerevisiae. Mol Cell Biol (2008) 0.96
Identification and characterization of GFAPkappa, a novel glial fibrillary acidic protein isoform. Glia (2007) 0.93
A novel plasmid-based microarray screen identifies suppressors of rrp6Delta in Saccharomyces cerevisiae. Mol Cell Biol (2006) 0.92
Making ends meet: coordination between RNA 3'-end processing and transcription initiation. Wiley Interdiscip Rev RNA (2013) 0.91
Orthologous genes identified by transcriptome sequencing in the spider genus Stegodyphus. BMC Genomics (2012) 0.91
Insertion and deletion processes in recent human history. PLoS One (2010) 0.91
Transcription-associated quality control of mRNP. Biochim Biophys Acta (2012) 0.90
The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 in mRNA 3'-end processing in Saccharomyces cerevisiae. RNA (2006) 0.89
An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes. PLoS One (2012) 0.88
An ending is a new beginning: transcription termination supports re-initiation. Cell Cycle (2011) 0.88
Take the "A" tail--quality control of ribosomal and transfer RNA. Biochim Biophys Acta (2008) 0.87
General, rapid, and transcription-dependent fragmentation of nucleolar antigens in S. cerevisiae mRNA export mutants. RNA (2008) 0.87
The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. Eur J Hum Genet (2006) 0.87
Using inverted indices for accelerating LINGO calculations. J Chem Inf Model (2011) 0.87
Joint and separate evaluation of risk reduction: impact on sensitivity to risk reduction magnitude in the context of 4 different risk information formats. Med Decis Making (2010) 0.87
Co-transcriptional monitoring of mRNP formation. Nat Struct Biol (2003) 0.86
CUT it out: silencing of noise in the transcriptome. Nat Struct Mol Biol (2006) 0.86
T-body formation precedes virus-like particle maturation in S. cerevisiae. RNA Biol (2011) 0.85
A link between transcription and mRNP quality in Saccharomyces cerevisiae. RNA Biol (2005) 0.83
Nuclear retention prevents premature cytoplasmic appearance of mRNA. Mol Cell (2012) 0.82
Regulatory mechanisms for 3'-end alternative splicing and polyadenylation of the Glial Fibrillary Acidic Protein, GFAP, transcript. Nucleic Acids Res (2007) 0.82
Saccharomyces cerevisiae Ngl3p is an active 3'-5' exonuclease with a specificity towards poly-A RNA reminiscent of cellular deadenylases. Nucleic Acids Res (2011) 0.82
GeneRecon--a coalescent based tool for fine-scale association mapping. Bioinformatics (2006) 0.82
Heat hyperalgesia in humans: assessed by different stimulus temperature profiles. Eur J Pain (2002) 0.82
Sequence analysis of measles virus strains collected during the pre- and early-vaccination era in Denmark reveals a considerable diversity of ancient strains. APMIS (2002) 0.81
A tree-based method for the rapid screening of chemical fingerprints. Algorithms Mol Biol (2010) 0.80
When gametophytic self-incompatibility meets gynodioecy. Genet Res (Camb) (2008) 0.80
Implication of Ccr4-Not complex function in mRNA quality control in Saccharomyces cerevisiae. RNA (2011) 0.80
Assembly of export-competent mRNP: it's all about being connected. Mol Cell (2009) 0.79
Increased rate of human mutations where DNA and RNA polymerases collide. Trends Genet (2009) 0.79
Rat1p maintains RNA polymerase II CTD phosphorylation balance. RNA (2014) 0.78
A pause to splice. Mol Cell (2010) 0.78
[Knowledge of human papilloma virus-associated disease among women in general practice]. Ugeskr Laeger (2009) 0.78