Published in Genetics on August 01, 2003
The effect of gene conversion on the divergence between duplicated genes. Genetics (2004) 1.68
Ancient haplotypes of the HLA Class II region. Genome Res (2005) 1.62
The evolutionary history of the Arabidopsis lyrata complex: a hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier. BMC Evol Biol (2010) 1.12
Population genetic models of duplicated genes. Genetica (2009) 1.09
Linkage disequilibrium and recombination rate estimates in the self-incompatibility region of Arabidopsis lyrata. Genetics (2007) 1.05
Linkage disequilibrium between incompatibility locus region genes in the plant Arabidopsis lyrata. Genetics (2006) 1.04
Preservation of a pseudogene by gene conversion and diversifying selection. Genetics (2008) 1.01
Evolution under strong balancing selection: how many codons determine specificity at the female self-incompatibility gene SRK in Brassicaceae? BMC Evol Biol (2007) 1.00
Sporophytic self-incompatibility genes and mating system variation in Arabis alpina. Ann Bot (2011) 0.94
Trans-specificity at loci near the self-incompatibility loci in Arabidopsis. Genetics (2006) 0.93
Recent loss of self-incompatibility by degradation of the male component in allotetraploid Arabidopsis kamchatica. PLoS Genet (2012) 0.85
Molecular characterization of Lal2, an SRK-like gene linked to the S-locus in the wild mustard Leavenworthia alabamica. Genetics (2008) 0.84
Self-incompatibility in Brassicaceae: identification and characterization of SRK-like sequences linked to the S-locus in the tribe Biscutelleae. G3 (Bethesda) (2014) 0.83
Molecular characterization and evolution of self-incompatibility genes in Arabidopsis thaliana: the case of the Sc haplotype. Genetics (2013) 0.83
What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity (Edinb) (2016) 0.81
Molecular population genetics of the SRK and SCR self-incompatibility genes in the wild plant species Brassica cretica (Brassicaceae). Genetics (2008) 0.80
Evolution of S-domain receptor-like kinases in land plants and origination of S-locus receptor kinases in Brassicaceae. BMC Evol Biol (2013) 0.79
New analysis for consistency among markers in the study of genetic diversity: development and application to the description of bacterial diversity. BMC Evol Biol (2007) 0.79
Breeding system of the annual Cruciferae, Arabidopsis kamchatica subsp. kawasakiana. J Plant Res (2007) 0.78
Charlesworth et al. on Background Selection and Neutral Diversity. Genetics (2016) 0.75
Tissue Culture as a Source of Replicates in Nonmodel Plants: Variation in Cold Response in Arabidopsis lyrata ssp. petraea. G3 (Bethesda) (2016) 0.75
Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica. Mol Biol Evol (2017) 0.75
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol (1985) 47.78
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol (1986) 36.06
Adaptive protein evolution at the Adh locus in Drosophila. Nature (1991) 31.65
Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics (1985) 20.92
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature (1992) 15.49
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics (1999) 14.86
Simple methods for testing the molecular evolutionary clock hypothesis. Genetics (1993) 11.26
The effect of change in population size on DNA polymorphism. Genetics (1989) 9.10
A statistical test for detecting geographic subdivision. Mol Biol Evol (1992) 8.79
A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics (2002) 7.41
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol (2000) 6.61
The Distribution of Self-Sterility Alleles in Populations. Genetics (1939) 5.24
Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster. Genetics (1994) 5.05
The male determinant of self-incompatibility in Brassica. Science (1999) 5.03
Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature (1999) 4.28
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genet Res (1997) 4.28
A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism. Proc Natl Acad Sci U S A (1990) 3.85
A new statistic for detecting genetic differentiation. Genetics (2000) 3.20
The S receptor kinase determines self-incompatibility in Brassica stigma. Nature (2000) 2.96
Linkage disequilibria and the site frequency spectra in the su(s) and su(w(a)) regions of the Drosophila melanogaster X chromosome. Genetics (2000) 2.57
The pollen determinant of self-incompatibility in Brassica campestris. Proc Natl Acad Sci U S A (2000) 2.50
Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Mol Biol Evol (1990) 2.41
Physical linkage of the SLG and SRK genes at the self-incompatibility locus of Brassica oleracea. Mol Gen Genet (1993) 2.39
Self-incompatibility in the genus Arabidopsis: characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana. Plant Cell (2001) 2.30
Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics (1994) 2.19
A highly conserved Brassica gene with homology to the S-locus-specific glycoprotein structural gene. Plant Cell (1989) 2.18
Genomic organization of the S locus: Identification and characterization of genes in SLG/SRK region of S(9) haplotype of Brassica campestris (syn. rapa). Genetics (1999) 2.12
Rates and patterns of molecular evolution in inbred and outbred Arabidopsis. Mol Biol Evol (2002) 2.08
DNA sequences of self-incompatibility genes from Brassica campestris and B. oleracea: polymorphism predating speciation. Plant Mol Biol (1991) 1.87
PCP-A1, a defensin-like Brassica pollen coat protein that binds the S locus glycoprotein, is the product of gametophytic gene expression. Plant Cell (1998) 1.86
Striking sequence similarity in inter- and intra-specific comparisons of class I SLG alleles from Brassica oleracea and Brassica campestris: implications for the evolution and recognition mechanism. Proc Natl Acad Sci U S A (1997) 1.75
Pollen[mdash]Stigma Signaling in the Sporophytic Self-Incompatibility Response. Plant Cell (1993) 1.69
Identification and characterization of a polymorphic receptor kinase gene linked to the self-incompatibility locus of Arabidopsis lyrata. Genetics (2001) 1.54
Comparative mapping of the Brassica S locus region and its homeolog in Arabidopsis. Implications for the evolution of mating systems in the Brassicaceae. Plant Cell (1998) 1.48
An Arabidopsis thaliana Gene with Sequence Similarity to the S-Locus Receptor Kinase of Brassica oleracea: Sequence and Expression. Plant Physiol (1992) 1.45
DNA polymorphism, haplotype structure and balancing selection in the Leavenworthia PgiC locus. Genetics (1999) 1.44
An alternative transcript of the S locus glycoprotein gene in a class II pollen-recessive self-incompatibility haplotype of Brassica oleracea encodes a membrane-anchored protein. Plant Cell (1993) 1.43
The molecular genetics of self-incompatibility in Brassica. Annu Rev Genet (1989) 1.41
A simple and rapid method for the preparation of total plant DNA. Biotechniques (1990) 1.41
Recombination and selection at Brassica self-incompatibility loci. Genetics (1999) 1.41
Molecular characterization of the S locus in two self-incompatible Brassica napus lines. Plant Cell (1996) 1.31
A superfamily of S locus-related sequences in Arabidopsis: diverse structures and expression patterns. Plant Cell (1994) 1.27
Estimating the number, frequency, and dominance of S-alleles in a natural population of Arabidopsis lyrata(Brassicaceae) with sporophytic control of self-incompatibility. Heredity (Edinb) (2003) 1.22
Highly divergent sequences of the pollen self-incompatibility (S) gene in class-I S haplotypes of Brassica campestris (syn. rapa) L. FEBS Lett (2000) 1.19
Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response. Plant Mol Biol (2001) 1.19
Evolutionary aspects of the S-related genes of the Brassica self-incompatibility system: synonymous and nonsynonymous base substitutions. Genetics (1995) 1.19
Nucleotide and derived amino acid sequence of the cyanogenic beta-glucosidase (linamarase) from white clover (Trifolium repens L.). Plant Mol Biol (1991) 1.17
The S15 self-incompatibility haplotype in Brassica oleracea includes three S gene family members expressed in stigmas. Plant Cell (1999) 1.11
The S locus glycoprotein and the S receptor kinase are sufficient for self-pollen rejection in Brassica. Proc Natl Acad Sci U S A (2000) 1.03
Recognition specificity of self-incompatibility maintained after the divergence of Brassica oleracea and Brassica rapa. Plant J (2002) 1.01
Polymorphism of the S-locus glycoprotein gene (SLG) and the S-locus related gene (SLR1) in Raphanus sativus L. and self-incompatible ornamental plants in the Brassicaceae. Mol Gen Genet (1998) 1.01
Identification and physical mapping of a polymorphic human T cell receptor V beta gene with a frequent null allele. J Exp Med (1993) 1.00
Sequence and structural diversity of the S locus genes from different lines with the same self-recognition specificities in Brassica oleracea. Genetics (2000) 0.96
Evolution of the Brassica self-incompatibility locus: a look into S-locus gene polymorphisms. Proc Natl Acad Sci U S A (1997) 0.93
Intrahaplotype polymorphism at the Brassica S locus. Genetics (2001) 0.90
An S-locus-related gene in Arabidopsis encodes a functional kinase and produces two classes of transcripts. Plant J (1996) 0.89
Sequence comparisons among dispersed members of the Brassica S multigene family in an S9 genome. Mol Genet Genomics (2001) 0.89
Three members of the S multigene family are linked to the S locus of Brassica. Mol Gen Genet (1997) 0.83
Multiple S gene family members including natural antisense transcripts are differentially expressed during development of maize flowers. J Biol Chem (2000) 0.81
Heterozygosity in pin-thrum plants or with partial sex linkage. Genetics (1972) 0.80
Evidence for orthologous S-locus-related I genes in several genera of Brassicaceae. Mol Gen Genet (2001) 0.79
Molecular relationships between alcohol dehydrogenase null-activity alleles from natural populations of Drosophila melanogaster. Mol Biol Evol (1992) 0.79
Variation in genome-wide mutation rates within and between human families. Nat Genet (2011) 8.84
A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics (2002) 7.41
RNA exosome depletion reveals transcription upstream of active human promoters. Science (2008) 6.80
Insights into hominid evolution from the gorilla genome sequence. Nature (2012) 4.12
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genet (2006) 3.53
Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome. Nat Genet (2006) 3.45
De novo mutations in the gene encoding the synaptic scaffolding protein SHANK3 in patients ascertained for schizophrenia. Proc Natl Acad Sci U S A (2010) 3.13
Great ape genetic diversity and population history. Nature (2013) 2.95
Recombination hotspots and population structure in Plasmodium falciparum. PLoS Biol (2005) 2.67
The bonobo genome compared with the chimpanzee and human genomes. Nature (2012) 2.49
Plasmodium falciparum genome-wide scans for positive selection, recombination hot spots and resistance to antimalarial drugs. Nat Genet (2010) 2.48
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics (2005) 2.34
Global genetic diversity and evolution of var genes associated with placental and severe childhood malaria. Mol Biochem Parasitol (2006) 2.24
Estimating selection on nonsynonymous mutations. Genetics (2005) 2.19
Mutations in centrosomal protein CEP152 in primary microcephaly families linked to MCPH4. Am J Hum Genet (2010) 2.05
CoaSim: a flexible environment for simulating genetic data under coalescent models. BMC Bioinformatics (2005) 1.96
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection. Genome Res (2011) 1.88
Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA. Mol Biochem Parasitol (2007) 1.86
High-resolution genomic analysis of human mitochondrial RNA sequence variation. Science (2014) 1.71
Whole genome association mapping by incompatibilities and local perfect phylogenies. BMC Bioinformatics (2006) 1.68
SOAPindel: efficient identification of indels from short paired reads. Genome Res (2012) 1.59
Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proc Natl Acad Sci U S A (2009) 1.57
The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Mol Biol Evol (2006) 1.57
Ancestral population genomics: the coalescent hidden Markov model approach. Genetics (2009) 1.54
The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res (2011) 1.53
Phenotypic variation and natural selection at catsup, a pleiotropic quantitative trait gene in Drosophila. Curr Biol (2006) 1.49
Exome sequencing identifies mutations in the gene TTC7A in French-Canadian cases with hereditary multiple intestinal atresia. J Med Genet (2013) 1.44
Functional divergence caused by ancient positive selection of a Drosophila hybrid incompatibility locus. PLoS Biol (2004) 1.41
Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools. Mol Ecol (2013) 1.38
Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model. PLoS Genet (2011) 1.37
The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants. BMC Genomics (2006) 1.36
Rare copy number variants contribute to congenital left-sided heart disease. PLoS Genet (2012) 1.35
Plasmodium falciparum genetic diversity maintained and amplified over 5 years of a low transmission endemic in the Peruvian Amazon. Mol Biol Evol (2010) 1.33
Estimates of the genomic mutation rate for detrimental alleles in Drosophila melanogaster. Genetics (2004) 1.33
Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genet (2008) 1.29
Retracted Darwinian selection on a selfing locus. Science (2004) 1.29
High recombination rates and hotspots in a Plasmodium falciparum genetic cross. Genome Biol (2011) 1.27
Nosema ceranae (Microsporidia), a controversial 21st century honey bee pathogen. Environ Microbiol Rep (2013) 1.25
Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata. Mol Biol Evol (2003) 1.25
Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet (2010) 1.24
Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome. Mol Biol Evol (2010) 1.23
A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species. PLoS Genet (2012) 1.23
Phenotypic and genotypic expression of self-incompatibility haplotypes in Arabidopsis lyrata suggests unique origin of alleles in different dominance classes. Mol Biol Evol (2005) 1.20
The detection of shared and ancestral polymorphisms. Genet Res (2005) 1.19
Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus. Genet Res (2003) 1.13
A murine specific expansion of the Rhox cluster involved in embryonic stem cell biology is under natural selection. BMC Genomics (2006) 1.12
Evidence for additive and interaction effects of host genotype and infection in malaria. Proc Natl Acad Sci U S A (2012) 1.11
S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster. Curr Biol (2002) 1.11
Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Mol Ecol (2006) 1.10
The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer (2004) 1.09
Rare allelic forms of PRDM9 associated with childhood leukemogenesis. Genome Res (2012) 1.09
Genomic determinants of protein evolution and polymorphism in Arabidopsis. Genome Biol Evol (2011) 1.09
A population genetic approach to mapping neurological disorder genes using deep resequencing. PLoS Genet (2011) 1.07
Local phylogeny mapping of quantitative traits: higher accuracy and better ranking than single-marker association in genomewide scans. Genetics (2008) 1.07
Whole-exome sequencing reveals a rapid change in the frequency of rare functional variants in a founding population of humans. PLoS Genet (2013) 1.03
Expression of distinct self-incompatibility specificities in Arabidopsis thaliana. Genetics (2009) 1.02
The prevalence of Acarapis woodi in Spanish honey bee (Apis mellifera) colonies. Exp Parasitol (2012) 1.00
Reconstructing origins of loss of self-incompatibility and selfing in North American Arabidopsis lyrata: a population genetic context. Evolution (2010) 0.97
Age-dependent recombination rates in human pedigrees. PLoS Genet (2011) 0.95
Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. J Gen Virol (2004) 0.95
A family-based probabilistic method for capturing de novo mutations from high-throughput short-read sequencing data. Stat Appl Genet Mol Biol (2012) 0.92
Insertion and deletion processes in recent human history. PLoS One (2010) 0.91
Orthologous genes identified by transcriptome sequencing in the spider genus Stegodyphus. BMC Genomics (2012) 0.91
Next-generation sequencing approaches for genetic mapping of complex diseases. J Neuroimmunol (2012) 0.91
Hypervariable antigen genes in malaria have ancient roots. BMC Evol Biol (2013) 0.90
Genetic adaptation of the antibacterial human innate immunity network. BMC Evol Biol (2011) 0.89
Spatial and temporal patterns of neutral and adaptive genetic variation in the endangered African wild dog (Lycaon pictus). Mol Ecol (2012) 0.88
An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes. PLoS One (2012) 0.88
The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. Eur J Hum Genet (2006) 0.87
RNA polymerase plays both sides: vivid and bidirectional transcription around and upstream of active promoters. Cell Cycle (2009) 0.87
Selection shapes malaria genomes and drives divergence between pathogens infecting hominids versus rodents. BMC Evol Biol (2008) 0.86
Behavioural and physiological adaptations to low-temperature environments in the common frog, Rana temporaria. BMC Evol Biol (2014) 0.84
Selective constraint, background selection, and mutation accumulation variability within and between human populations. BMC Genomics (2013) 0.82
GeneRecon--a coalescent based tool for fine-scale association mapping. Bioinformatics (2006) 0.82
Association of age-dependent height and bone mineral density decline with increased arterial stiffness and rate of fractures in hypertensive individuals. J Hypertens (2015) 0.82
Harnessing genomics to identify environmental determinants of heritable disease. Mutat Res (2012) 0.81
Prevalence, awareness, and management of CKD and cardiovascular risk factors in publicly funded health care. Clin J Am Soc Nephrol (2014) 0.81
Sequence analysis of measles virus strains collected during the pre- and early-vaccination era in Denmark reveals a considerable diversity of ancient strains. APMIS (2002) 0.81
Similarity in recombination rate estimates highly correlates with genetic differentiation in humans. PLoS One (2011) 0.80
When gametophytic self-incompatibility meets gynodioecy. Genet Res (Camb) (2008) 0.80
Increased rate of human mutations where DNA and RNA polymerases collide. Trends Genet (2009) 0.79
Absence of three known benzimidazole resistance mutations in Trichostrongylus tenuis, a nematode parasite of avian hosts. Vet Parasitol (2008) 0.79
Virulence and polar tube protein genetic diversity of Nosema ceranae (Microsporidia) field isolates from Northern and Southern Europe in honeybees (Apis mellifera iberiensis). Environ Microbiol Rep (2014) 0.78
Inferences on the evolutionary history of the S-element family of Drosophila melanogaster. Mol Biol Evol (2003) 0.78
Disentangling the effects of breakdown of self-incompatibility and transition to selfing in North American Arabidopsis lyrata. Mol Ecol (2012) 0.78
Exploiting gene expression variation to capture gene-environment interactions for disease. Front Genet (2013) 0.77
Evidence for weak genetic recombination at the PTP2 locus of Nosema ceranae. Environ Microbiol (2014) 0.77
Holistic screening of collapsing honey bee colonies in Spain: a case study. BMC Res Notes (2014) 0.77
Association mapping and disease: evolutionary perspectives. Methods Mol Biol (2012) 0.76
Unraveling recombination rate evolution using ancestral recombination maps. Bioessays (2014) 0.75
Macrogeographic population structure in a parasitic nematode with avian hosts. Vet Parasitol (2006) 0.75