Published in BMC Bioinformatics on March 19, 2009
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Discovering time-lagged rules from microarray data using gene profile classifiers. BMC Bioinformatics (2011) 0.77
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Mining gene expression databases for association rules. Bioinformatics (2003) 2.06
Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions. J Mol Biol (2001) 2.03
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. Bioinformatics (2003) 1.95
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Detecting clusters of different geometrical shapes in microarray gene expression data. Bioinformatics (2005) 1.03
Analyzing microarray data using quantitative association rules. Bioinformatics (2005) 0.97
Inference of transcriptional regulation relationships from gene expression data. Bioinformatics (2003) 0.97
Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining. BMC Bioinformatics (2007) 0.93
Mining gene expression data for positive and negative co-regulated gene clusters. Bioinformatics (2004) 0.89
Network-based classification of breast cancer metastasis. Mol Syst Biol (2007) 12.18
Inferring pathway activity toward precise disease classification. PLoS Comput Biol (2008) 3.48
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Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell (2009) 2.44
A feature-based approach to modeling protein-protein interaction hot spots. Nucleic Acids Res (2009) 1.41
Modularized learning of genetic interaction networks from biological annotations and mRNA expression data. Bioinformatics (2005) 1.33
Optogenetic mimicry of the transient activation of dopamine neurons by natural reward is sufficient for operant reinforcement. PLoS One (2012) 1.32
A protein interaction network associated with asthma. J Theor Biol (2008) 1.14
SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms. Nucleic Acids Res (2006) 1.14
PKCε promotes oncogenic functions of ATF2 in the nucleus while blocking its apoptotic function at mitochondria. Cell (2012) 1.11
Dynamic changes in DNA methylation and hydroxymethylation when hES cells undergo differentiation toward a neuronal lineage. Hum Mol Genet (2013) 1.08
Regression trees for regulatory element identification. Bioinformatics (2004) 1.07
Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes. BMC Syst Biol (2010) 1.04
Detecting clusters of different geometrical shapes in microarray gene expression data. Bioinformatics (2005) 1.03
Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification. Bioinformatics (2009) 1.03
RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression. Bioinformatics (2010) 1.03
Building the process-drug-side effect network to discover the relationship between biological processes and side effects. BMC Bioinformatics (2011) 1.00
Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications. Nucleic Acids Res (2006) 0.98
Protein comparison at the domain architecture level. BMC Bioinformatics (2009) 0.96
Integrative analysis of congenital muscular torticollis: from gene expression to clinical significance. BMC Med Genomics (2013) 0.95
DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture. Nucleic Acids Res (2008) 0.94
Analysis of AML genes in dysregulated molecular networks. BMC Bioinformatics (2009) 0.93
Specificity of molecular interactions in transient protein-protein interaction interfaces. Proteins (2006) 0.93
Multivariate classification of urine metabolome profiles for breast cancer diagnosis. BMC Bioinformatics (2010) 0.93
Density-induced support vector data description. IEEE Trans Neural Netw (2007) 0.91
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets. Nucleic Acids Res (2006) 0.90
Speed estimation from a tri-axial accelerometer using neural networks. Conf Proc IEEE Eng Med Biol Soc (2007) 0.89
Architecture of basic building blocks in protein and domain structural interaction networks. Bioinformatics (2004) 0.89
The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions. BMC Genomics (2004) 0.86
A method to improve protein subcellular localization prediction by integrating various biological data sources. BMC Bioinformatics (2009) 0.85
bZIPDB: a database of regulatory information for human bZIP transcription factors. BMC Genomics (2007) 0.84
AsiDesigner: exon-based siRNA design server considering alternative splicing. Nucleic Acids Res (2008) 0.83
Discovering context-specific relationships from biological literature by using multi-level context terms. BMC Med Inform Decis Mak (2012) 0.82
Social deficits in the AY-9944 mouse model of atypical absence epilepsy. Behav Brain Res (2012) 0.82
Rule-based multi-scale simulation for drug effect pathway analysis. BMC Med Inform Decis Mak (2013) 0.82
H-CORE: enabling genome-scale Bayesian analysis of biological systems without prior knowledge. Biosystems (2006) 0.82
Prediction of extracellular matrix proteins based on distinctive sequence and domain characteristics. J Comput Biol (2010) 0.82
MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge. BMC Bioinformatics (2010) 0.81
Generation and application of drug indication inference models using typed network motif comparison analysis. BMC Med Inform Decis Mak (2013) 0.81
CaGe: A Web-Based Cancer Gene Annotation System for Cancer Genomics. Genomics Inform (2012) 0.81
Mathematical modeling of humoral immune response suppression by passively administered antibodies in mice. J Theor Biol (2006) 0.80
Usefulness of serum C-reactive protein level for predicting flap complication after performing free microvascular head and neck reconstruction. J Craniofac Surg (2014) 0.79
SigCS base: an integrated genetic information resource for human cerebral stroke. BMC Syst Biol (2011) 0.79
Predicting disease phenotypes based on the molecular networks with condition-responsive correlation. Int J Data Min Bioinform (2011) 0.79
Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets. Bioinformatics (2010) 0.79
Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer. BMC Syst Biol (2011) 0.79
Prediction of cancer prognosis with the genetic basis of transcriptional variations. Genomics (2011) 0.78
Differentially co-expressed interacting protein pairs discriminate samples under distinct stages of HIV type 1 infection. BMC Syst Biol (2011) 0.78
Context-dependent transcriptional regulations between signal transduction pathways. BMC Bioinformatics (2011) 0.77
Embryonic stem cell interactomics: the beginning of a long road to biological function. Stem Cell Rev (2012) 0.77
Computational identification of combinatorial regulation and transcription factor binding sites. Biotechnol Bioeng (2007) 0.77
Towards clustering of incomplete microarray data without the use of imputation. Bioinformatics (2006) 0.77
Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor. Int J Data Min Bioinform (2010) 0.76
Synthetic inter-species cooperation of host and virus for targeted genetic evolution. J Biotechnol (2011) 0.76
Relationships between genetic polymorphisms and transcriptional profiles for outcome prediction in anticancer agent treatment. BMB Rep (2010) 0.76
An Approach to Reducing Information Loss and Achieving Diversity of Sensitive Attributes in k-anonymity Methods. Interact J Med Res (2012) 0.76
Prioritization of SNPs for genome-wide association studies using an interaction model of genetic variation, gene expression, and trait variation. Mol Cells (2012) 0.76
Inference of combinatorial neuronal synchrony with Bayesian networks. J Neurosci Methods (2009) 0.76
Computational identification of altered metabolism using gene expression and metabolic pathways. Biotechnol Bioeng (2009) 0.76
Context-based resolution of semantic conflicts in biological pathways. BMC Med Inform Decis Mak (2015) 0.76
Inference of brain pathway activities for Alzheimer's disease classification. BMC Med Inform Decis Mak (2015) 0.75
PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics. Bioinformatics (2010) 0.75
Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases. BMC Bioinformatics (2009) 0.75
Analysis of AML Genes in Dysregulated Molecular Networks. Summit on Translat Bioinforma (2009) 0.75
Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach. BMC Bioinformatics (2009) 0.75
Correction: Meta-Analysis of Large-Scale Toxicogenomic Data Finds Neuronal Regeneration Related Protein and Cathepsin D to Be Novel Biomarkers of Drug-Induced Toxicity. PLoS One (2016) 0.75
Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning. Bioinformatics (2013) 0.75
Predicting the Absorption Potential of Chemical Compounds through a Deep Learning Approach. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
A Bayesian ensemble approach with a disease gene network predicts damaging effects of missense variants of human cancers. Hum Genet (2012) 0.75
CONVIRT: a web-based tool for transcriptional regulatory site identification using a conserved virtual chromosome. BMB Rep (2009) 0.75
Fuzzy branching temporal logic. IEEE Trans Syst Man Cybern B Cybern (2004) 0.75
Computational identification of significantly regulated metabolic reactions by integration of data on enzyme activity and gene expression. BMB Rep (2008) 0.75
Predicting tissue-specific expressions based on sequence characteristics. BMB Rep (2011) 0.75
Normalization of Tumor Vessels by Tie2 Activation and Ang2 Inhibition Enhances Drug Delivery and Produces a Favorable Tumor Microenvironment. Cancer Cell (2017) 0.75