PubRank

Carsten O Daub

Author PubWeight™ 79.37‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A promoter-level mammalian expression atlas. Nature 2014 6.25
2 An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010 6.24
3 The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet 2009 6.02
4 The regulated retrotransposon transcriptome of mammalian cells. Nat Genet 2009 5.79
5 Tiny RNAs associated with transcription start sites in animals. Nat Genet 2009 4.19
6 TagDust--a program to eliminate artifacts from next generation sequencing data. Bioinformatics 2009 3.64
7 Hidden layers of human small RNAs. BMC Genomics 2008 3.31
8 A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness. Genome Res 2010 2.87
9 Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data. Genome Biol 2009 2.86
10 Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nat Methods 2010 2.30
11 SAMStat: monitoring biases in next generation sequencing data. Bioinformatics 2010 1.95
12 Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science 2015 1.91
13 Unamplified cap analysis of gene expression on a single-molecule sequencer. Genome Res 2011 1.79
14 Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Res 2010 1.73
15 Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proc Natl Acad Sci U S A 2012 1.72
16 MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines. PLoS One 2009 1.70
17 The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation. Genome Biol 2009 1.60
18 Gateways to the FANTOM5 promoter level mammalian expression atlas. Genome Biol 2015 1.58
19 Molecular networks of DYX1C1 gene show connection to neuronal migration genes and cytoskeletal proteins. Biol Psychiatry 2012 1.50
20 Adipose tissue microRNAs as regulators of CCL2 production in human obesity. Diabetes 2012 1.44
21 Transcriptional features of genomic regulatory blocks. Genome Biol 2009 1.37
22 FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions. Genome Biol 2009 1.32
23 Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. Bioinformatics 2009 1.32
24 Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J Exp Bot 2005 1.31
25 Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes. Proc Natl Acad Sci U S A 2012 1.26
26 NGSView: an extensible open source editor for next-generation sequencing data. Bioinformatics 2009 1.20
27 Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation. Nucleic Acids Res 2010 1.08
28 Promoter architecture of mouse olfactory receptor genes. Genome Res 2011 1.06
29 Optimization of turn-back primers in isothermal amplification. Nucleic Acids Res 2011 1.04
30 pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns. Nucleic Acids Res 2011 1.02
31 The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi. PLoS Negl Trop Dis 2011 1.01
32 Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns. BMC Genomics 2010 0.96
33 Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE. Nucleic Acids Res 2010 0.91
34 Regional differences in gene expression and promoter usage in aged human brains. Neurobiol Aging 2013 0.90
35 High-throughput transcription profiling identifies putative epigenetic regulators of hematopoiesis. Blood 2014 0.89
36 Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals. Plant Cell Physiol 2013 0.88
37 SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes. BMC Bioinformatics 2009 0.84
38 Prediction of function divergence in protein families using the substitution rate variation parameter alpha. Mol Biol Evol 2006 0.83
39 Additive effects of microRNAs and transcription factors on CCL2 production in human white adipose tissue. Diabetes 2013 0.79
40 Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics 2014 0.78
41 A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells. Front Genet 2013 0.78