Published in Dev Dyn on June 01, 2009
Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development. Sci Rep (2014) 1.18
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Molecular changes during egg activation. Curr Top Dev Biol (2013) 0.90
Embryonic poly(A)-binding protein (ePAB) phosphorylation is required for Xenopus oocyte maturation. Biochem J (2012) 0.87
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Exploring the phosphoproteome profiles during Xenopus egg activation by calcium stimulation using a fully automated phosphopeptide purification system. J Biochem (2015) 0.75
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A quantitative atlas of mitotic phosphorylation. Proc Natl Acad Sci U S A (2008) 10.07
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Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. J Proteome Res (2007) 5.57
A dual-kinase mechanism for Wnt co-receptor phosphorylation and activation. Nature (2005) 5.50
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc Natl Acad Sci U S A (2007) 5.09
Optimization and use of peptide mass measurement accuracy in shotgun proteomics. Mol Cell Proteomics (2006) 4.25
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proc Natl Acad Sci U S A (2007) 4.01
Axin-mediated CKI phosphorylation of beta-catenin at Ser 45: a molecular switch for the Wnt pathway. Genes Dev (2002) 3.80
Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proc Natl Acad Sci U S A (2005) 3.77
Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics. Nat Chem Biol (2007) 3.60
Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry. Anal Chem (2000) 3.38
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CPEB is a specificity factor that mediates cytoplasmic polyadenylation during Xenopus oocyte maturation. Cell (1994) 3.32
Beta-catenin signaling activity dissected in the early Xenopus embryo: a novel antisense approach. Dev Biol (2000) 3.12
Functions and regulations of fibroblast growth factor signaling during embryonic development. Dev Biol (2005) 2.92
Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate. EMBO J (2007) 2.48
Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation. J Proteome Res (2005) 2.44
Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proc Natl Acad Sci U S A (2008) 2.29
Phosphorylation of CPEB by Eg2 mediates the recruitment of CPSF into an active cytoplasmic polyadenylation complex. Mol Cell (2000) 2.21
RSK and MSK in MAP kinase signalling. J Cell Sci (2006) 1.98
A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer. J Proteome Res (2008) 1.92
Defining a large set of full-length clones from a Xenopus tropicalis EST project. Dev Biol (2004) 1.87
Mechanism for activation of the growth factor-activated AGC kinases by turn motif phosphorylation. EMBO J (2007) 1.74
Tandem mass spectrometry for peptide and protein sequence analysis. Biotechniques (2005) 1.70
Body fluid proteomics for biomarker discovery: lessons from the past hold the key to success in the future. J Proteome Res (2007) 1.52
Tandem phosphorylation of Ser-911 and Thr-912 at the C terminus of yeast plasma membrane H+-ATPase leads to glucose-dependent activation. J Biol Chem (2007) 1.51
Progesterone and insulin stimulation of CPEB-dependent polyadenylation is regulated by Aurora A and glycogen synthase kinase-3. Genes Dev (2004) 1.46
Advancing proteomics with ion/ion chemistry. Biotechniques (2006) 1.29
Biochemical fractionation of oocytes. Methods Cell Biol (1991) 1.27
Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications. J Proteome Res (2006) 1.22
Move it or lose it: axis specification in Xenopus. Development (2004) 1.16
Valence parity renders z(*)-type ions chemically distinct. J Am Chem Soc (2008) 1.15
APC shuttling to the membrane, nucleus and beyond. Trends Cell Biol (2008) 1.08
Embryonic poly(A)-binding protein stimulates translation in germ cells. Mol Cell Biol (2005) 1.08
BMP antagonism by Spemann's organizer regulates rostral-caudal fate of mesoderm. Dev Biol (2004) 0.99
Designation of the anterior/posterior axis in pregastrula Xenopus laevis. Dev Biol (2000) 0.87
The FGFR pathway is required for the trunk-inducing functions of Spemann's organizer. Dev Biol (2001) 0.81
Chordin affects pronephros development in Xenopus embryos by anteriorizing presomitic mesoderm. Dev Dyn (2007) 0.81
[Protective immunity induced by recombinant Schistosoma japonicum thioredoxin in mice]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi (2006) 0.77
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proc Natl Acad Sci U S A (2004) 13.14
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc Natl Acad Sci U S A (2007) 5.09
Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics. Nat Chem Biol (2007) 3.60
Decision tree-driven tandem mass spectrometry for shotgun proteomics. Nat Methods (2008) 3.53
Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Anal Chem (2007) 3.32
Performance characteristics of electron transfer dissociation mass spectrometry. Mol Cell Proteomics (2007) 3.09
A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Anal Chem (2004) 3.08
Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics. Mol Cell Proteomics (2012) 3.05
The utility of ETD mass spectrometry in proteomic analysis. Biochim Biophys Acta (2006) 2.85
Systematic functional prioritization of protein posttranslational modifications. Cell (2012) 2.78
Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome. Mol Cell (2012) 2.54
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Mol Syst Biol (2011) 2.44
Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nat Methods (2011) 2.39
Value of using multiple proteases for large-scale mass spectrometry-based proteomics. J Proteome Res (2010) 2.36
Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proc Natl Acad Sci U S A (2008) 2.29
Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. Anal Chem (2009) 2.20
COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA. Proteomics (2011) 2.19
Urinary proteomics in diabetes and CKD. J Am Soc Nephrol (2008) 2.12
The one hour yeast proteome. Mol Cell Proteomics (2013) 2.10
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proc Natl Acad Sci U S A (2009) 1.95
A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer. J Proteome Res (2008) 1.92
Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Anal Chem (2007) 1.92
Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease. Mol Cell Proteomics (2010) 1.90
Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nat Methods (2011) 1.87
Post-acquisition ETD spectral processing for increased peptide identifications. J Am Soc Mass Spectrom (2009) 1.86
Phosphoproteomics for the masses. ACS Chem Biol (2010) 1.83
Recommendations for biomarker identification and qualification in clinical proteomics. Sci Transl Med (2010) 1.59
Body fluid proteomics for biomarker discovery: lessons from the past hold the key to success in the future. J Proteome Res (2007) 1.52
Tandem phosphorylation of Ser-911 and Thr-912 at the C terminus of yeast plasma membrane H+-ATPase leads to glucose-dependent activation. J Biol Chem (2007) 1.51
Urinary proteomic biomarkers in coronary artery disease. Mol Cell Proteomics (2007) 1.47
Identification and validation of urinary biomarkers for differential diagnosis and evaluation of therapeutic intervention in anti-neutrophil cytoplasmic antibody-associated vasculitis. Mol Cell Proteomics (2009) 1.41
A proteomics search algorithm specifically designed for high-resolution tandem mass spectra. J Proteome Res (2013) 1.40
Neutron-encoded mass signatures for multiplexed proteome quantification. Nat Methods (2013) 1.39
Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos. RNA (2009) 1.38
Limiting Ago protein restricts RNAi and microRNA biogenesis during early development in Xenopus laevis. Genes Dev (2011) 1.30
Advancing proteomics with ion/ion chemistry. Biotechniques (2006) 1.29
Peptide and protein quantification using iTRAQ with electron transfer dissociation. J Am Soc Mass Spectrom (2008) 1.29
Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiol (2009) 1.27
Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs. J Biol Chem (2012) 1.27
Electrophoretic methods for analysis of urinary polypeptides in IgA-associated renal diseases. Electrophoresis (2007) 1.26
Higher-energy collision-activated dissociation without a dedicated collision cell. Mol Cell Proteomics (2011) 1.26
Over 10,000 peptide identifications from the HeLa proteome by using single-shot capillary zone electrophoresis combined with tandem mass spectrometry. Angew Chem Int Ed Engl (2014) 1.25
Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture. Anal Chem (2010) 1.22
Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification. Anal Chem (2010) 1.22
Rethinking axial patterning in amphibians. Dev Dyn (2002) 1.21
Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation. J Biol Chem (2013) 1.20
Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: an update of recent developments. Mass Spectrom Rev (2009) 1.19
Phosphorylation regulates human OCT4. Proc Natl Acad Sci U S A (2012) 1.19
Infrared photoactivation reduces peptide folding and hydrogen-atom migration following ETD tandem mass spectrometry. Angew Chem Int Ed Engl (2009) 1.17
A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis. Cell Metab (2012) 1.16
A new probabilistic database search algorithm for ETD spectra. J Proteome Res (2009) 1.15
Valence parity renders z(*)-type ions chemically distinct. J Am Chem Soc (2008) 1.15
E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis. EMBO J (2014) 1.14
The effect of interfering ions on search algorithm performance for electron-transfer dissociation data. Proteomics (2010) 1.13
The human urinary proteome reveals high similarity between kidney aging and chronic kidney disease. Proteomics (2009) 1.11
Implementing photodissociation in an Orbitrap mass spectrometer. J Am Soc Mass Spectrom (2011) 1.09
Fate mapping hematopoietic lineages in the Xenopus embryo. Methods Mol Med (2005) 1.09
Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry. Anal Chem (2009) 1.08
Poly(A)-binding proteins are functionally distinct and have essential roles during vertebrate development. Proc Natl Acad Sci U S A (2011) 1.08
Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proc Natl Acad Sci U S A (2012) 1.08
Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Anal Chem (2012) 1.05
Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation. J Am Soc Mass Spectrom (2011) 1.05
Statistical analysis of electron transfer dissociation pairwise fragmentation patterns. Anal Chem (2011) 1.02
Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Anal Chem (2007) 1.01
Infrared multiphoton dissociation of peptide cations in a dual pressure linear ion trap mass spectrometer. Anal Chem (2009) 1.01
Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis. Mol Cell Proteomics (2012) 1.00
Discovery and validation of urinary biomarkers for prostate cancer. Proteomics Clin Appl (2008) 1.00
Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain. J Biol Chem (2012) 0.99
BMP antagonism by Spemann's organizer regulates rostral-caudal fate of mesoderm. Dev Biol (2004) 0.99
Neutron encoded labeling for peptide identification. Anal Chem (2013) 0.96
Characterization of molecules binding to the 70K N-terminal region of fibronectin by IFAST purification coupled with mass spectrometry. J Proteome Res (2013) 0.93
Primitive and definitive blood share a common origin in Xenopus: a comparison of lineage techniques used to construct fate maps. Dev Biol (2002) 0.93
Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer. Mol Cell Proteomics (2010) 0.92
Xenopus embryonic poly(A) binding protein 2 (ePABP2) defines a new family of cytoplasmic poly(A) binding proteins expressed during the early stages of vertebrate development. Genesis (2004) 0.92
Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation. Mol Cell Proteomics (2013) 0.92
Heading in a new direction: implications of the revised fate map for understanding Xenopus laevis development. Dev Biol (2006) 0.91
Cascade dissociations of peptide cation-radicals. Part 1. Scope and effects of amino acid residues in penta-, nona-, and decapeptides. J Am Soc Mass Spectrom (2012) 0.91
Intelligent data acquisition blends targeted and discovery methods. J Proteome Res (2014) 0.90
Structural basis for RNA recognition by a type II poly(A)-binding protein. Proc Natl Acad Sci U S A (2008) 0.89
Development of a GC/Quadrupole-Orbitrap mass spectrometer, part II: new approaches for discovery metabolomics. Anal Chem (2014) 0.89
Activated ion ETD performed in a modified collision cell on a hybrid QLT-Oribtrap mass spectrometer. J Am Soc Mass Spectrom (2013) 0.88
Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex. EMBO J (2011) 0.88
Development and characterization of a GC-enabled QLT-Orbitrap for high-resolution and high-mass accuracy GC/MS. Anal Chem (2010) 0.88
Segmentation of precursor mass range using "tiling" approach increases peptide identifications for MS1-based label-free quantification. Anal Chem (2013) 0.88
Zygotic control of maternal cyclin A1 translation and mRNA stability. Dev Dyn (2002) 0.88
Neutron-encoded signatures enable product ion annotation from tandem mass spectra. Mol Cell Proteomics (2013) 0.88
Multipurpose dissociation cell for enhanced ETD of intact protein species. J Am Soc Mass Spectrom (2013) 0.87
Neutron-encoded mass signatures for quantitative top-down proteomics. Anal Chem (2014) 0.87
A proteogenomic survey of the Medicago truncatula genome. Mol Cell Proteomics (2012) 0.87
Spatially restricted translation of the xCR1 mRNA in Xenopus embryos. Mol Cell Biol (2009) 0.87
Embryonic poly(A)-binding protein (ePAB) phosphorylation is required for Xenopus oocyte maturation. Biochem J (2012) 0.87
Analyses of zebrafish and Xenopus oocyte maturation reveal conserved and diverged features of translational regulation of maternal cyclin B1 mRNA. BMC Dev Biol (2009) 0.87