Published in Plant Physiol on May 22, 2009
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol (2009) 2.98
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta (2011) 2.84
The prognostic and functional role of microRNAs in acute myeloid leukemia. Blood (2010) 2.33
A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis. PLoS Genet (2010) 2.05
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2010) 2.03
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell (2011) 1.93
Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing. BMC Genomics (2011) 1.51
Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in arabidopsis. PLoS Genet (2011) 1.49
A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L. PLoS One (2014) 1.46
Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New Phytol (2011) 1.41
Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biol (2010) 1.40
Sequence and structure of Brassica rapa chromosome A3. Genome Biol (2010) 1.35
Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate. Genome Biol (2010) 1.34
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol (2011) 1.32
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type. BMC Genomics (2010) 1.29
Sugar signaling in root responses to low phosphorus availability. Plant Physiol (2011) 1.25
Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes. Plant Physiol (2011) 1.23
Regulation of phosphate starvation responses in higher plants. Ann Bot (2010) 1.21
Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members. PLoS One (2012) 1.19
Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana. PLoS One (2012) 1.18
Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots. PLoS One (2011) 1.17
Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. Plant Cell (2014) 1.17
Cloning and characterization of maize miRNAs involved in responses to nitrogen deficiency. PLoS One (2012) 1.17
Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing. BMC Genomics (2012) 1.16
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell (2013) 1.14
Arabidopsis roots and shoots show distinct temporal adaptation patterns toward nitrogen starvation. Plant Physiol (2011) 1.13
Identification of miRNAs and their targets using high-throughput sequencing and degradome analysis in cytoplasmic male-sterile and its maintainer fertile lines of Brassica juncea. BMC Genomics (2013) 1.12
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Res (2012) 1.12
An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis. Plant Mol Biol (2011) 1.11
Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium. J Exp Bot (2012) 1.09
A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness. Plant Cell (2013) 1.08
The role of microRNAs in phosphorus deficiency signaling. Plant Physiol (2011) 1.03
Current view on phytoplasma genomes and encoded metabolism. ScientificWorldJournal (2011) 1.01
Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation. BMC Genomics (2013) 1.01
A comprehensive expression profile of microRNAs and other classes of non-coding small RNAs in barley under phosphorous-deficient and -sufficient conditions. DNA Res (2012) 1.01
Macromolecular composition of phloem exudate from white lupin (Lupinus albus L.). BMC Plant Biol (2011) 0.99
Genome-wide identification and characterization of cadmium-responsive microRNAs and their target genes in radish (Raphanus sativus L.) roots. J Exp Bot (2013) 0.99
Transgenic plants that express the phytoplasma effector SAP11 show altered phosphate starvation and defense responses. Plant Physiol (2014) 0.97
Identifying conserved and novel microRNAs in developing seeds of Brassica napus using deep sequencing. PLoS One (2012) 0.97
Discovery and profiling of novel and conserved microRNAs during flower development in Carya cathayensis via deep sequencing. Planta (2012) 0.95
MicroRNAs in the rhizobia legume symbiosis. Plant Physiol (2009) 0.95
NPK macronutrients and microRNA homeostasis. Front Plant Sci (2015) 0.94
Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions. BMC Plant Biol (2013) 0.94
miRNAs mediate SnRK1-dependent energy signaling in Arabidopsis. Front Plant Sci (2013) 0.93
A common set of developmental miRNAs are upregulated in Nicotiana benthamiana by diverse begomoviruses. Virol J (2011) 0.93
Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana. Wiley Interdiscip Rev Syst Biol Med (2010) 0.93
Two young MicroRNAs originating from target duplication mediate nitrogen starvation adaptation via regulation of glucosinolate synthesis in Arabidopsis thaliana. Plant Physiol (2013) 0.93
mirEX: a platform for comparative exploration of plant pri-miRNA expression data. Nucleic Acids Res (2011) 0.92
Coordination between zinc and phosphate homeostasis involves the transcription factor PHR1, the phosphate exporter PHO1, and its homologue PHO1;H3 in Arabidopsis. J Exp Bot (2014) 0.92
Regulation of miR399f transcription by AtMYB2 affects phosphate starvation responses in Arabidopsis. Plant Physiol (2012) 0.91
Molecular mechanisms of regulation of sulfate assimilation: first steps on a long road. Front Plant Sci (2014) 0.89
Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiol (2012) 0.89
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiol (2013) 0.89
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics (2013) 0.88
miRNA regulation of nutrient homeostasis in plants. Front Plant Sci (2015) 0.88
Developmentally regulated expression and complex processing of barley pri-microRNAs. BMC Genomics (2013) 0.88
Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize. Ann Bot (2013) 0.88
Transcriptionally and post-transcriptionally regulated microRNAs in heat stress response in barley. J Exp Bot (2014) 0.88
Identification and comparative analysis of microRNAs associated with low-N tolerance in rice genotypes. PLoS One (2012) 0.87
Integration of P, S, Fe, and Zn nutrition signals in Arabidopsis thaliana: potential involvement of PHOSPHATE STARVATION RESPONSE 1 (PHR1). Front Plant Sci (2015) 0.87
Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation. PLoS One (2012) 0.86
The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants. New Phytol (2014) 0.86
The Stable Level of Glutamine synthetase 2 Plays an Important Role in Rice Growth and in Carbon-Nitrogen Metabolic Balance. Int J Mol Sci (2015) 0.86
The mitochondrial folylpolyglutamate synthetase gene is required for nitrogen utilization during early seedling development in arabidopsis. Plant Physiol (2012) 0.85
SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data. Front Plant Sci (2011) 0.85
How does phosphate status influence the development of the arbuscular mycorrhizal symbiosis? Plant Signal Behav (2011) 0.85
Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing. BMC Plant Biol (2014) 0.85
RNA interference: concept to reality in crop improvement. Planta (2014) 0.84
Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana. Plant Signal Behav (2010) 0.84
Prediction of biological functions of Shewanella-like protein phosphatases (Shelphs) across different domains of life. Funct Integr Genomics (2011) 0.84
Genome-wide analysis of miRNAs and Tasi-RNAs in Zea mays in response to phosphate deficiency. Funct Integr Genomics (2017) 0.84
Ectopic expression of miR156 represses nodulation and causes morphological and developmental changes in Lotus japonicus. Mol Genet Genomics (2014) 0.84
Comparative analysis of miRNAs and their targets across four plant species. BMC Res Notes (2011) 0.84
Systemic regulation of mineral homeostasis by micro RNAs. Front Plant Sci (2013) 0.83
NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome. J Nucleic Acids (2010) 0.83
The Role of the P1BS Element Containing Promoter-Driven Genes in Pi Transport and Homeostasis in Plants. Front Plant Sci (2012) 0.83
Accumulated expression level of cytosolic glutamine synthetase 1 gene (OsGS1;1 or OsGS1;2) alter plant development and the carbon-nitrogen metabolic status in rice. PLoS One (2014) 0.83
A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input. Plant Physiol (2014) 0.83
Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from deep sequencing of small RNAs and cleaved target RNAs. Plant Cell Environ (2014) 0.82
The transcription factor PHR1 regulates lipid remodeling and triacylglycerol accumulation in Arabidopsis thaliana during phosphorus starvation. J Exp Bot (2015) 0.82
The role of Arabidopsis MYB2 in miR399f-mediated phosphate-starvation response. Plant Signal Behav (2013) 0.82
Quantitative RT-PCR analysis of 20 transcription factor genes of MADS, ARF, HAP2, MBF and HB families in moisture stressed shoot and root tissues of sorghum. Physiol Mol Biol Plants (2012) 0.82
Phosphate Deficiency Induces the Jasmonate Pathway and Enhances Resistance to Insect Herbivory. Plant Physiol (2016) 0.82
Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development. J Exp Bot (2013) 0.81
Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture. Plant Cell Physiol (2016) 0.81
Non-Canonical Processing of Arabidopsis pri-miR319a/b/c Generates Additional microRNAs to Target One RAP2.12 mRNA Isoform. Front Plant Sci (2012) 0.81
Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis. Sci Rep (2015) 0.80
Role of microRNAs involved in plant response to nitrogen and phosphorous limiting conditions. Front Plant Sci (2015) 0.79
Boron-deficiency-responsive microRNAs and their targets in Citrus sinensis leaves. BMC Plant Biol (2015) 0.79
WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol (2015) 0.79
Identification of Rapeseed MicroRNAs Involved in Early Stage Seed Germination under Salt and Drought Stresses. Front Plant Sci (2016) 0.78
MiR171h restricts root symbioses and shows like its target NSP2 a complex transcriptional regulation in Medicago truncatula. BMC Plant Biol (2014) 0.78
Combined Small RNA and Degradome Sequencing Reveals Novel MiRNAs and Their Targets in the High-Yield Mutant Wheat Strain Yunong 3114. PLoS One (2015) 0.78
The miRNA-mediated post-transcriptional regulation of maize response to nitrate. Plant Signal Behav (2012) 0.78
Differential profiling analysis of miRNAs reveals a regulatory role in low N stress response of Populus. Funct Integr Genomics (2014) 0.78
Transcriptome-Wide Identification of miRNA Targets under Nitrogen Deficiency in Populus tomentosa Using Degradome Sequencing. Int J Mol Sci (2015) 0.77
Selection of suitable reference genes for quantitative RT-PCR normalization in the halophyte Halostachys caspica under salt and drought stress. Sci Rep (2016) 0.77
Dehydration-responsive miRNAs in foxtail millet: genome-wide identification, characterization and expression profiling. Planta (2015) 0.76
The THO/TREX Complex Active in miRNA Biogenesis Negatively Regulates Root-Associated Acid Phosphatase Activity Induced by Phosphate Starvation. Plant Physiol (2016) 0.76
NPKS uptake, sensing, and signaling and miRNAs in plant nutrient stress. Protoplasma (2015) 0.76
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PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol (2006) 4.33
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Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana. Biochem J (2006) 3.36
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Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ (2007) 2.71
MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J (2007) 2.65
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Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant J (2007) 2.09
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Identification and characterization of small RNAs from the phloem of Brassica napus. Plant J (2007) 1.92
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Opportunities for improving phosphorus-use efficiency in crop plants. New Phytol (2012) 1.74
Towards the proteome of Brassica napus phloem sap. Proteomics (2006) 1.73
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Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell (2009) 1.66
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Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Mol Biol (2008) 1.58
The Arabidopsis sku6/spiral1 gene encodes a plus end-localized microtubule-interacting protein involved in directional cell expansion. Plant Cell (2004) 1.56
Long distance transport and movement of RNA through the phloem. J Exp Bot (2007) 1.51
Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics (2010) 1.51
Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell Environ (2014) 1.51
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Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biol (2010) 1.40
TRICHOME BIREFRINGENCE and its homolog AT5G01360 encode plant-specific DUF231 proteins required for cellulose biosynthesis in Arabidopsis. Plant Physiol (2010) 1.39
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res (2009) 1.36
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Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol (2011) 1.32
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Proteomics of curcurbit phloem exudate reveals a network of defence proteins. Phytochemistry (2004) 1.30
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Mutations in UDP-Glucose:sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds. Plant Physiol (2009) 1.22
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Evidence for the presence and activity of a complete antioxidant defence system in mature sieve tubes. Plant J (2002) 1.22
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Identification of primary and secondary metabolites with phosphorus status-dependent abundance in Arabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation. Plant Cell Environ (2014) 0.93
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