Published in Nucleic Acids Res on June 15, 2009
Redefining Escherichia coli σ(70) promoter elements: -15 motif as a complement of the -10 motif. J Bacteriol (2011) 1.03
The whole set of constitutive promoters recognized by RNA polymerase RpoD holoenzyme of Escherichia coli. PLoS One (2014) 0.88
Identification of Rgg binding sites in the Streptococcus pyogenes chromosome. J Bacteriol (2011) 0.86
Promoters of Escherichia coli versus promoter islands: function and structure comparison. PLoS One (2013) 0.81
Upstream binding of idling RNA polymerase modulates transcription initiation from a nearby promoter. J Biol Chem (2015) 0.79
High-density transcriptional initiation signals underline genomic islands in bacteria. PLoS One (2012) 0.79
Visualizing the activity of Escherichia coli divergent promoters and probing their dependence on superhelical density using dual-colour fluorescent reporter vector. Sci Rep (2015) 0.76
Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC). BMC Genomics (2016) 0.76
The nucleoid protein Dps binds genomic DNA of Escherichia coli in a non-random manner. PLoS One (2017) 0.75
Information content of binding sites on nucleotide sequences. J Mol Biol (1986) 30.48
Divergent transcription from active promoters. Science (2008) 11.03
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nat Biotechnol (2000) 6.36
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res (2006) 5.57
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res (2003) 3.78
Evolvability and hierarchy in rewired bacterial gene networks. Nature (2008) 3.43
Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. J Mol Biol (2003) 3.23
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol Cell (2006) 2.99
Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome. Proc Natl Acad Sci U S A (2005) 2.95
GadY, a small-RNA regulator of acid response genes in Escherichia coli. J Bacteriol (2004) 2.89
Identification of an UP element consensus sequence for bacterial promoters. Proc Natl Acad Sci U S A (1998) 2.80
Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res (2005) 2.58
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome. Biosystems (2002) 2.31
A computational approach to identify genes for functional RNAs in genomic sequences. Nucleic Acids Res (2001) 2.28
Anatomy of Escherichia coli sigma70 promoters. Nucleic Acids Res (2006) 2.25
Identification and analysis of 'extended -10' promoters in Escherichia coli. Nucleic Acids Res (2003) 2.13
Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. J Bacteriol (2005) 2.06
Sequence alignment kernel for recognition of promoter regions. Bioinformatics (2003) 1.90
DNA bending by an adenine--thymine tract and its role in gene regulation. Proc Natl Acad Sci U S A (2001) 1.81
Consequences of reduction of Klebsiella pneumoniae capsule expression on interactions of this bacterium with epithelial cells. Infect Immun (1999) 1.65
Escherichia coli promoter sequences: analysis and prediction. Methods Enzymol (1996) 1.61
Genomic analysis of protein-DNA interactions in bacteria: insights into transcription and chromosome organization. Mol Microbiol (2007) 1.47
A novel method for prokaryotic promoter prediction based on DNA stability. BMC Bioinformatics (2005) 1.28
Transcriptional regulation and organization of the dcuA and dcuB genes, encoding homologous anaerobic C4-dicarboxylate transporters in Escherichia coli. J Bacteriol (1998) 1.21
An assessment of neural network and statistical approaches for prediction of E. coli promoter sites. Nucleic Acids Res (1992) 1.21
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress. BMC Bioinformatics (2006) 1.20
Non-canonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase. Nucleic Acids Res (1997) 1.16
Influence of Mg2+ and temperature on formation of the transcription bubble. J Biol Chem (1997) 1.16
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming. Nucleic Acids Res (2005) 1.07
Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes. PLoS Genet (2006) 1.05
Investigations of Escherichia coli promoter sequences with artificial neural networks: new signals discovered upstream of the transcriptional startpoint. Proc Int Conf Intell Syst Mol Biol (1995) 1.00
DNA bendability--a novel feature in E. coli promoter recognition. J Biomol Struct Dyn (1999) 0.94
Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs. BMC Bioinformatics (2006) 0.90
Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences. Bioinformatics (2001) 0.88
Proximal transcribed regions of bacterial promoters have a non-random distribution of A/T tracts. Nucleic Acids Res (1999) 0.87
Intragenic promotor-like sites in the genome of Escherichia coli discovery and functional implication. J Bioinform Comput Biol (2007) 0.85
Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm. J Bioinform Comput Biol (2006) 0.81
Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes. BMC Bioinformatics (2008) 0.81
Mode of DNA-protein interaction between the C-terminal domain of Escherichia coli RNA polymerase alpha subunit and T7D promoter UP element. Nucleic Acids Res (2001) 0.81
Non-canonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase. Nucleic Acids Res (1997) 1.16
DNA initiates polymorphic structural transitions in lecithin. FEBS Lett (1996) 1.06
Thermal imaging in medicine: A comparative study of infrared systems operating in wavelength ranges of 3-5 and 8-12 microm as applied to diagnosis. Dokl Biochem Biophys (2006) 1.04
Prospects of thermography in modern medicine: a study of spatial changes in human skin temperature induced by administration of Perftoran. Dokl Biol Sci (2004) 0.97
Does breathing rate affect the thermal pattern of the human face? Dokl Biol Sci (2006) 0.96
The mechanism of fractal-like structure formation by bacterial populations. J Biol Phys (1999) 0.95
DNA bendability--a novel feature in E. coli promoter recognition. J Biomol Struct Dyn (1999) 0.94
Membrane fusion during infection of Escherichia coli cells by phage T4. FEBS Lett (1991) 0.92
Proximal transcribed regions of bacterial promoters have a non-random distribution of A/T tracts. Nucleic Acids Res (1999) 0.87
Dimeric association of Escherichia coli RNA polymerase alpha subunits, studied by cleavage of single-cysteine alpha subunits conjugated to iron-(S)-1-[p-(bromoacetamido)benzyl]ethylenediaminetetraacetate. Biochemistry (1998) 0.86
Interaction of bacterial RNA-polymerase with two different promoters of phage T7 DNA. Conformational analysis. Biochim Biophys Acta (1993) 0.85
On the fidelity of transcription by Escherichia coli RNA polymerase. FEBS Lett (1980) 0.80
Burst of succinate dehydrogenase and α-ketoglutarate dehydrogenase activity in concert with the expression of genes coding for respiratory chain proteins underlies short-term beneficial physiological stress in mitochondria. Int J Biochem Cell Biol (2012) 0.79
[Specific modification of the alpha-subunit of Escherichia coli Rna polymerase by monomercuric derivative of fluorescein mercuric acetate]. Mol Biol (Mosk) (1991) 0.78
[Antisense transcription within the hns locus of Escherichia coli]. Mol Biol (Mosk) (2010) 0.78
[Bacterioferritin: properties, structural and functional organization of the dps gene regulatary region]. Biofizika (2011) 0.77
Three-dimensional reconstruction of synapses and dendritic spines in the rat and ground squirrel hippocampus: new structural-functional paradigms for synaptic function. Neurosci Behav Physiol (2005) 0.77
[Specificiety of DNA-protein interactions within transcription complexes of Escherichia coli]. Mol Biol (Mosk) (2004) 0.76
[Study of structural transitions in erythrocyte membranes during hereditary hemochromatosis]. Biull Eksp Biol Med (1997) 0.75
[Formation of crystalline packing in reconstructed membranes from bacteriorhodopsin and egg phosphatidylcholine]. Dokl Akad Nauk (1994) 0.75
The structural and functional organization of the baseplate distal part of T4 bacteriophage. Biochim Biophys Acta (1992) 0.75
[Noncanonical structural elements in promoter DNA and their role in complexation with DNA polymerase]. Mol Biol (Mosk) (1998) 0.75
[Effect of contrast agents on the activity of acid phosphatase in mouse neutrophils]. Biull Eksp Biol Med (1998) 0.75
[Structural changes in proteins of the bacteriophage T4 basal plate resulting from the attachment of long fibrils]. Mol Biol (Mosk) (1988) 0.75
[Does taxis exist in bacterial viruses?]. Biofizika (1995) 0.75
[Biophysical basis of medical thermovision]. Biofizika (2012) 0.75
[From disorder to order using the example of the function of phage T4 baseplate]. Biofizika (1993) 0.75
[Clock synchronization in various modes of regulation]. Biofizika (2007) 0.75
[A model for the development of stable competitive interrelations in the self-organization of biosystems]. Biofizika (2009) 0.75
[Quantitative analysis of variability of electrocardiograms typical for polymorphic arrhythmias]. Biofizika (2001) 0.75
[3-dimensional organization of the basal plate of phage T4 in the star configuration]. Dokl Akad Nauk SSSR (1985) 0.75
Spontaneous mobility of a lipid layer in a system composed of three immiscible liquids. Dokl Biophys (2001) 0.75
Characteristics of temperature distributions around the eyes. Dokl Biol Sci (2004) 0.75
[How does environment modify the spatial structure of Dictyostelium discoideum population]. Biofizika (2000) 0.75
[Model of reversible phage interaction with cell receptors]. Biofizika (1982) 0.75
Display peculiarities of hypodermic heating sources on the human body surface. Dokl Biochem Biophys (2008) 0.75
Physico-chemical study of complex formation of DNA with wild-type and mutant E. coli RNA polymerases. Recognition properties of beta-subunit. FEBS Lett (1986) 0.75
An RNA polymerase with reduced fidelity of RNA synthesis from an E. coli mutant suggests the existence of a correction system of non-complementary nucleotide incorporation during transcription. Mol Biol Rep (1982) 0.75
Results of a three-year trial of arterial hypertension prevention in a population of children aged 11-15 years by overweight control. Cor Vasa (1990) 0.75
[Comparative study of structural transitions in erythrocyte membranes in donors and newborns]. Biull Eksp Biol Med (1997) 0.75
Mechanisms of wave interaction as a model of dosed substance secretion. Dokl Biochem Biophys (2002) 0.75
[Nitrate respiration capacity as a new metabolic aspect of thread-like Thiothrix sulfur bacteria]. Mikrobiologiia (2013) 0.75
Flexible elements in the structure of promoter DNA as probed by cationic surfactant binding. J Biomol Struct Dyn (2002) 0.75
[Base plate as a logical controller, matching receptor and other functions of bacteriophage T4]. Biofizika (1996) 0.75
Structural organization and phase behavior of DNA-calcium-dipalmitoylphosphatidylcholine complex. Biochemistry (Mosc) (1998) 0.75
[Some aspects of protein-nucleic acid recognition during transcription initiation]. Mol Biol (Mosk) (1998) 0.75
[Structural organization of the baseplate of phage T4]. Dokl Akad Nauk SSSR (1983) 0.75
[Three-dimensional reconstruction of synapse and dendritic spines in the hippocampus of rats and ground squirrels: new paradigms of the structure and function of a synapse]. Zh Vyssh Nerv Deiat Im I P Pavlova (2004) 0.75
[Levels in the structural organization of Escherichia coli promoter DNA]. Biofizika (2002) 0.75
[Sequence-determined conformational changes in the coding region of the promoter DNA on transcription complex formation]. Mol Biol (Mosk) (2001) 0.75
[Spectral analysis of nucleotide sequences]. Biofizika (1989) 0.75
[Distribution and functional significance of A/T tracts in promotor sequences of Escherichia coli]. Mol Biol (Mosk) (2002) 0.75
Mechanisms of vibrational mobility of lipid layer in a thermomechanical oscillator composed of three immiscible liquids. Dokl Biophys (2001) 0.75
[Aberrant form of T4 phage reorganization]. Dokl Akad Nauk SSSR (1980) 0.75
[Do external or internal reasons determine the synchronicity of cell division at early stages of embryogenesis?]. Biofizika (1991) 0.75