Published in Plant Cell on June 26, 2009
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis. Plant Cell (2011) 2.16
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res (2012) 1.71
Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization. PLoS One (2010) 1.67
iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins. PLoS One (2011) 1.59
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PLoS One (2010) 1.44
Super-resolution imaging of plasmodesmata using three-dimensional structured illumination microscopy. Plant Physiol (2010) 1.27
Single cystathionine β-synthase domain-containing proteins modulate development by regulating the thioredoxin system in Arabidopsis. Plant Cell (2011) 1.12
Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol (2011) 1.11
Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. Plant Physiol (2009) 1.10
A multi-label classifier for predicting the subcellular localization of gram-negative bacterial proteins with both single and multiple sites. PLoS One (2011) 1.03
A multi-label predictor for identifying the subcellular locations of singleplex and multiplex eukaryotic proteins. PLoS One (2012) 1.01
Validating the location of fluorescent protein fusions in the endomembrane system. Plant Cell (2009) 0.93
Mapping plant interactomes using literature curated and predicted protein-protein interaction data sets. Plant Cell (2010) 0.92
Functional characterisation of metal(loid) processes in planta through the integration of synchrotron techniques and plant molecular biology. Anal Bioanal Chem (2011) 0.88
Defining the core proteome of the chloroplast envelope membranes. Front Plant Sci (2013) 0.87
Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants. Front Plant Sci (2013) 0.85
Acquisition, conservation, and loss of dual-targeted proteins in land plants. Plant Physiol (2012) 0.85
Emission spectra profiling of fluorescent proteins in living plant cells. Plant Methods (2013) 0.85
ARF1 localizes to the golgi and the trans-golgi network. Plant Cell (2011) 0.84
Deciphering the roles of acyl-CoA-binding proteins in plant cells. Protoplasma (2015) 0.83
Protein-induced modulation of chloroplast membrane morphology. Front Plant Sci (2012) 0.83
The dual targeting ability of type II NAD(P)H dehydrogenases arose early in land plant evolution. BMC Plant Biol (2013) 0.79
Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family. Front Plant Sci (2014) 0.79
Crop epigenetics and the molecular hardware of genotype × environment interactions. Front Plant Sci (2015) 0.75
Frataxin Is Localized to Both the Chloroplast and Mitochondrion and Is Involved in Chloroplast Fe-S Protein Function in Arabidopsis. PLoS One (2015) 0.75
Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for tRNA Import into Mitochondria. Plant Physiol (2016) 0.75
Sparse regressions for predicting and interpreting subcellular localization of multi-label proteins. BMC Bioinformatics (2016) 0.75
Editorial overview - computational approaches in aid of advancing understanding in plant physiology. Front Plant Sci (2011) 0.75
SmMYB36, a Novel R2R3-MYB Transcription Factor, Enhances Tanshinone Accumulation and Decreases Phenolic Acid Content in Salvia miltiorrhiza Hairy Roots. Sci Rep (2017) 0.75
Ancient Plant Glyoxylate/Succinic Semialdehyde Reductases: GLYR1s Are Cytosolic, Whereas GLYR2s Are Localized to Both Mitochondria and Plastids. Front Plant Sci (2017) 0.75
Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc (2007) 19.50
Post-translational transport into intact chloroplasts of a precursor to the small subunit of ribulose-1,5-bisphosphate carboxylase. Proc Natl Acad Sci U S A (1978) 8.17
A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J (2007) 7.24
SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res (2006) 3.63
Genetic engineering of terpenoid metabolism attracts bodyguards to Arabidopsis. Science (2005) 3.46
Mapping the Arabidopsis organelle proteome. Proc Natl Acad Sci U S A (2006) 3.03
Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms. Nat Protoc (2008) 2.89
Ancient invasions: from endosymbionts to organelles. Science (2004) 2.87
Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana. Nat Biotechnol (2007) 2.69
High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiol (2004) 2.48
A predicted interactome for Arabidopsis. Plant Physiol (2007) 2.41
AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes. Plant Physiol (2004) 2.11
An endoplasmic reticulum stress response in Arabidopsis is mediated by proteolytic processing and nuclear relocation of a membrane-associated transcription factor, bZIP28. Plant Cell (2007) 2.05
High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Plant J (2005) 1.87
Evidence for a protein transported through the secretory pathway en route to the higher plant chloroplast. Nat Cell Biol (2005) 1.66
bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection. EMBO J (2006) 1.64
Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiol (2008) 1.48
Rice 2020: a call for an international coordinated effort in rice functional genomics. Mol Plant (2008) 1.45
A membrane-tethered transcription factor defines a branch of the heat stress response in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 1.43
Predation and eukaryote cell origins: a coevolutionary perspective. Int J Biochem Cell Biol (2008) 1.43
Alternative NAD(P)H dehydrogenases of plant mitochondria. Annu Rev Plant Biol (2004) 1.43
Approaches to defining dual-targeted proteins in Arabidopsis. Plant J (2008) 1.37
Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons. Plant Cell (2005) 1.33
A single precursor protein for ferrochelatase-I from Arabidopsis is imported in vitro into both chloroplasts and mitochondria. J Biol Chem (1997) 1.32
Arabidopsis reversibly glycosylated polypeptides 1 and 2 are essential for pollen development. Plant Physiol (2006) 1.28
The analysis of protein-protein interactions in plants by bimolecular fluorescence complementation. Plant Physiol (2007) 1.22
Genomics. Plant biology in 2010. Science (2000) 1.21
Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity. Plant Physiol (2008) 1.20
Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants. Plant Cell (2007) 1.20
Specificity of RCN1-mediated protein phosphatase 2A regulation in meristem organization and stress response in roots. Plant Physiol (2007) 1.18
Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts. FEBS J (2009) 1.17
Eclipsed distribution: a phenomenon of dual targeting of protein and its significance. Bioessays (2007) 1.17
Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light. Plant Physiol (2003) 1.14
A novel in vitro system for simultaneous import of precursor proteins into mitochondria and chloroplasts. Plant J (2002) 1.13
Dual targeting of spinach protoporphyrinogen oxidase II to mitochondria and chloroplasts by alternative use of two in-frame initiation codons. J Biol Chem (2001) 1.12
Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana. FEBS Lett (2008) 1.11
Peroxisomes: minted by the ER. Curr Opin Cell Biol (2008) 1.06
A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling. Mol Cell Proteomics (2006) 1.06
Differential gene expression and subcellular targeting of Arabidopsis glutathione S-transferase F8 is achieved through alternative transcription start sites. J Biol Chem (2007) 1.05
Characterization of mitochondrial alternative NAD(P)H dehydrogenases in Arabidopsis: intraorganelle location and expression. Plant Cell Physiol (2005) 1.02
Characterization of the targeting signal of dual-targeted pea glutathione reductase. Plant Mol Biol (2003) 1.01
Charting plant interactomes: possibilities and challenges. Trends Plant Sci (2008) 0.99
Differential usage of two in-frame translational start codons regulates subcellular localization of Arabidopsis thaliana THI1. J Cell Sci (2003) 0.96
Plant organelle proteomics. Curr Opin Plant Biol (2007) 0.93
Subcellular localization of two types of ferrochelatase in cucumber. Planta (2003) 0.91
A cell-free system for light-dependent nuclear import of phytochrome. Plant J (2008) 0.90
Arabidopsis thaliana ferrochelatase-I and -II are not imported into Arabidopsis mitochondria. FEBS Lett (2001) 0.88
Isolated plant mitochondria import chloroplast precursor proteins in vitro with the same efficiency as chloroplasts. J Biol Chem (2001) 0.86
Dual targeting of the tRNA nucleotidyltransferase in plants: not just the signal. J Exp Bot (2007) 0.85
NADPH is a specific inhibitor of protein import into glyoxysomes. Plant J (1998) 0.80
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell (2007) 2.51
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis. Plant Cell (2011) 2.16
Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants. J Biol Chem (2003) 1.96
Organization and regulation of mitochondrial respiration in plants. Annu Rev Plant Biol (2011) 1.82
The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. Plant Physiol (2008) 1.73
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. Plant Physiol (2009) 1.65
The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol (2009) 1.60
Alternative oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses. Biochim Biophys Acta (2006) 1.49
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Plant Cell (2010) 1.47
The emerging importance of the SPX domain-containing proteins in phosphate homeostasis. New Phytol (2012) 1.47
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol (2008) 1.45
Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell (2002) 1.44
Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana. Plant Mol Biol (2005) 1.41
Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol (2010) 1.41
Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia. Plant Physiol (2008) 1.39
Approaches to defining dual-targeted proteins in Arabidopsis. Plant J (2008) 1.37
The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress. Plant J (2009) 1.35
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell (2013) 1.34
Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation. FEBS Lett (2009) 1.29
A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. Plant Physiol (2004) 1.27
A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis. Plant Cell (2013) 1.26
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings. Plant Physiol (2009) 1.23
Towards an analysis of the rice mitochondrial proteome. Plant Physiol (2003) 1.22
Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity. Plant Physiol (2008) 1.20
Functional definition of outer membrane proteins involved in preprotein import into mitochondria. Plant Cell (2007) 1.19
Pentatricopeptide repeat domain protein 1 lowers the levels of mitochondrial leucine tRNAs in cells. Nucleic Acids Res (2009) 1.19
Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice. Plant Physiol (2013) 1.18
Alternative oxidase: a target and regulator of stress responses. Physiol Plant (2009) 1.18
In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Plant Physiol (2011) 1.17
Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts. FEBS J (2009) 1.17
Analysis of the alternative oxidase promoters from soybean. Plant Physiol (2003) 1.17
Open abdominal management after damage-control laparotomy for trauma: a prospective observational American Association for the Surgery of Trauma multicenter study. J Trauma Acute Care Surg (2013) 1.17
Ordered assembly of mitochondria during rice germination begins with pro-mitochondrial structures rich in components of the protein import apparatus. Plant Mol Biol (2006) 1.16
Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs. Plant Physiol (2009) 1.15
Tom22', an 8-kDa trans-site receptor in plants and protozoans, is a conserved feature of the TOM complex that appeared early in the evolution of eukaryotes. Mol Biol Evol (2004) 1.15
Characterization of the preprotein and amino acid transporter gene family in Arabidopsis. Plant Physiol (2006) 1.15
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell (2013) 1.14
Defining the mitochondrial stress response in Arabidopsis thaliana. Mol Plant (2009) 1.14
Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. J Exp Bot (2008) 1.13
A novel in vitro system for simultaneous import of precursor proteins into mitochondria and chloroplasts. Plant J (2002) 1.13
Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. New Phytol (2011) 1.12
Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol (2011) 1.11
Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana. FEBS Lett (2008) 1.11
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell (2009) 1.10
Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol (2002) 1.10
A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor. FEBS Lett (2004) 1.10
Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol Biol (2006) 1.08
Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis. Plant Physiol (2008) 1.08
Mitochondrial biogenesis and function in Arabidopsis. Arabidopsis Book (2008) 1.06
Oxygen initiation of respiration and mitochondrial biogenesis in rice. J Biol Chem (2007) 1.06
Differential gene expression and subcellular targeting of Arabidopsis glutathione S-transferase F8 is achieved through alternative transcription start sites. J Biol Chem (2007) 1.05
Protein import into mitochondria: origins and functions today (review). Mol Membr Biol (2005) 1.05
Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination. Plant Physiol (2012) 1.05
Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves. New Phytol (2012) 1.04
Regulation of alternative oxidase gene expression in soybean. Plant Mol Biol (2002) 1.03
The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana. Plant J (2011) 1.03
Phosphate homeostasis in the yeast Saccharomyces cerevisiae, the key role of the SPX domain-containing proteins. FEBS Lett (2012) 1.03
Characterization of mitochondrial alternative NAD(P)H dehydrogenases in Arabidopsis: intraorganelle location and expression. Plant Cell Physiol (2005) 1.02
Superoxide stimulates a proton leak in potato mitochondria that is related to the activity of uncoupling protein. J Biol Chem (2003) 1.01
Characterization of the targeting signal of dual-targeted pea glutathione reductase. Plant Mol Biol (2003) 1.01
Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2. Plant J (2002) 1.01
Qualitative assessment of the inferior vena cava: useful tool for the evaluation of fluid status in critically ill patients. Am Surg (2012) 1.01
Intracellular gene transfer: reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase. Proc Natl Acad Sci U S A (2002) 1.01
A dual-targeted purple acid phosphatase in Arabidopsis thaliana moderates carbon metabolism and its overexpression leads to faster plant growth and higher seed yield. New Phytol (2012) 1.00
Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. J Exp Bot (2010) 1.00
Newfoundland rod-cone dystrophy, an early-onset retinal dystrophy, is caused by splice-junction mutations in RLBP1. Am J Hum Genet (2002) 1.00
Emergency tracheal intubation immediately following traumatic injury: an Eastern Association for the Surgery of Trauma practice management guideline. J Trauma Acute Care Surg (2012) 1.00
Chlorophyll biosynthesis. Expression of a second chl I gene of magnesium chelatase in Arabidopsis supports only limited chlorophyll synthesis. Plant Physiol (2002) 1.00
Unique components of the plant mitochondrial protein import apparatus. Biochim Biophys Acta (2012) 0.99
Prohibitins: mitochondrial partners in development and stress response. Trends Plant Sci (2010) 0.99
The cytoskeleton and the peroxisomal-targeted snowy cotyledon3 protein are required for chloroplast development in Arabidopsis. Plant Cell (2010) 0.98
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC Plant Biol (2010) 0.97
Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17:23 complex in Arabidopsis links mitochondrial activity and biogenesis. Plant Cell (2012) 0.97
Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress. BMC Genomics (2013) 0.96
Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germination. Plant Physiol (2010) 0.96
AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins. Plant Physiol (2013) 0.96
Zinc-dependent intermembrane space proteins stimulate import of carrier proteins into plant mitochondria. Plant J (2002) 0.96
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. J Biol Chem (2012) 0.96
Findings of a randomized controlled trial using limited transthoracic echocardiogram (LTTE) as a hemodynamic monitoring tool in the trauma bay. J Trauma Acute Care Surg (2014) 0.95
Using next-generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities. J Pathol (2011) 0.94
Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa. New Phytol (2010) 0.94
Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa. BMC Plant Biol (2010) 0.93
Limited transthoracic echocardiogram: so easy any trauma attending can do it. J Trauma (2011) 0.93