Published in BMC Plant Biol on March 31, 2010
Selection of reference genes for quantitative real-time PCR in bamboo (Phyllostachys edulis). PLoS One (2013) 1.41
Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum) using quantitative real-time RT-PCR. PLoS One (2014) 1.18
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell (2013) 1.14
Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol (2011) 1.11
Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy. Plant Cell (2011) 1.05
Identification of reference genes across physiological states for qRT-PCR through microarray meta-analysis. PLoS One (2011) 1.04
Evaluation of reference genes for accurate normalization of gene expression for real time-quantitative PCR in Pyrus pyrifolia using different tissue samples and seasonal conditions. PLoS One (2014) 1.02
Comparison of predictive methods and biological validation for qPCR reference genes in sunflower leaf senescence transcript analysis. Plant Cell Rep (2010) 1.02
Selection of appropriate reference genes for quantitative real-time PCR in Oxytropis ochrocephala Bunge using transcriptome datasets under abiotic stress treatments. Front Plant Sci (2015) 1.01
Selection of reliable reference genes for quantitative real-time PCR gene expression analysis in Jute (Corchorus capsularis) under stress treatments. Front Plant Sci (2015) 0.99
Validation of reference genes for real-time quantitative PCR normalization in soybean developmental and germinating seeds. Plant Cell Rep (2012) 0.97
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC Plant Biol (2010) 0.97
High-throughput identification of reference genes for research and clinical RT-qPCR analysis of breast cancer samples. J Clin Bioinforma (2013) 0.96
Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice. PLoS One (2013) 0.94
Validation of potential reference genes for qPCR in maize across abiotic stresses, hormone treatments, and tissue types. PLoS One (2014) 0.94
Characterization of reference genes for RT-qPCR in the desert moss Syntrichia caninervis in response to abiotic stress and desiccation/rehydration. Front Plant Sci (2015) 0.86
Selection of reliable reference genes for RT-qPCR analysis during developmental stages and abiotic stress in Setaria viridis. Sci Rep (2016) 0.86
Genome-Wide Identification and Validation of Reference Genes in Infected Tomato Leaves for Quantitative RT-PCR Analyses. PLoS One (2015) 0.85
Validation of reference genes aiming accurate normalization of qRT-PCR data in Dendrocalamus latiflorus Munro. PLoS One (2014) 0.84
Evaluation of reference genes for quantitative real-time PCR in oil palm elite planting materials propagated by tissue culture. PLoS One (2014) 0.83
Recommended Reference Genes for Quantitative PCR Analysis in Soybean Have Variable Stabilities during Diverse Biotic Stresses. PLoS One (2015) 0.82
PlantRGS: a web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants. DNA Res (2011) 0.82
Reference genes selection for transcript normalization in kenaf (Hibiscus cannabinus L.) under salinity and drought stress. PeerJ (2015) 0.81
Evaluation and selection of candidate reference genes for normalization of quantitative RT-PCR in Withania somnifera (L.) Dunal. PLoS One (2015) 0.78
Identification and validation of reference genes for quantitative real-time PCR normalization and its applications in lycium. PLoS One (2014) 0.78
Genome-Wide Identification of New Reference Genes for qRT-PCR Normalization under High Temperature Stress in Rice Endosperm. PLoS One (2015) 0.78
A bulk segregant gene expression analysis of a peach population reveals components of the underlying mechanism of the fruit cold response. PLoS One (2014) 0.78
Evaluation of Appropriate Reference Genes for Reverse Transcription-Quantitative PCR Studies in Different Tissues of a Desert Poplar via Comparision of Different Algorithms. Int J Mol Sci (2015) 0.77
Systemic suppression of the shoot metabolism upon rice root nematode infection. PLoS One (2014) 0.77
Selection and Validation of Appropriate Reference Genes for Quantitative Real-Time PCR Normalization in Staminate and Perfect Flowers of Andromonoecious Taihangia rupestris. Front Plant Sci (2017) 0.76
Identification and Evaluation of Reference Genes for Quantitative Analysis of Brazilian Pine (Araucaria angustifolia Bertol. Kuntze) Gene Expression. PLoS One (2015) 0.76
Selection and evaluation of new reference genes for RT-qPCR analysis in Epinephelus akaara based on transcriptome data. PLoS One (2017) 0.75
Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection. Sci Rep (2015) 0.75
Evaluation of Normalization Methods for RNA-Seq Gene Expression Estimation. IEEE Int Conf Bioinform Biomed Workshops (2011) 0.75
Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance. Rice (N Y) (2016) 0.75
Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation. G3 (Bethesda) (2016) 0.75
Validation of Reference Genes for RT-qPCR Studies of Gene Expression in Preharvest and Postharvest Longan Fruits under Different Experimental Conditions. Front Plant Sci (2016) 0.75
Screening and Validation of Housekeeping Genes of the Root and Cotyledon of Cunninghamia lanceolata under Abiotic Stresses by Using Quantitative Real-Time PCR. Int J Mol Sci (2016) 0.75
Transcriptome-Wide Identification, Classification, and Characterization of AP2/ERF Family Genes in the Desert Moss Syntrichia caninervis. Front Plant Sci (2017) 0.75
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol (2002) 82.19
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res (2004) 25.98
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol (2004) 19.29
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper--Excel-based tool using pair-wise correlations. Biotechnol Lett (2004) 18.55
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol (2001) 16.47
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
Microarray data normalization and transformation. Nat Genet (2002) 15.04
Evaluation of DNA microarray results with quantitative gene expression platforms. Nat Biotechnol (2006) 8.87
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J (2004) 6.58
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem Biophys Res Commun (2006) 5.83
An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol (2006) 4.63
The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol J (2008) 3.81
Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. BMC Plant Biol (2008) 3.57
F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol (2007) 3.18
Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. J Exp Bot (2009) 2.96
A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet (2009) 2.53
Not just a grain of rice: the quest for quality. Trends Plant Sci (2009) 2.36
Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC Mol Biol (2009) 2.34
Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol (2005) 2.28
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods (2007) 2.08
Interaction transcriptome analysis identifies Magnaporthe oryzae BAS1-4 as Biotrophy-associated secreted proteins in rice blast disease. Plant Cell (2009) 2.03
Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions. BMC Mol Biol (2009) 1.75
Transcript profiling of the anoxic rice coleoptile. Plant Physiol (2007) 1.73
Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res (2008) 1.73
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. Plant Physiol (2009) 1.65
Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. Plant Cell Physiol (2007) 1.59
Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice. FEBS J (2009) 1.57
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol (2008) 1.45
Genome-wide transcriptional analysis of salinity stressed japonica and indica rice genotypes during panicle initiation stage. Plant Mol Biol (2006) 1.42
Susceptibility of rice to the blast fungus, Magnaporthe grisea. J Plant Physiol (2007) 1.38
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods (2008) 1.27
Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice. Plant Sci (2009) 1.27
Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol (2007) 1.25
Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plant Striga hermonthica. New Phytol (2008) 1.24
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings. Plant Physiol (2009) 1.23
A discussion of statistical methods for design and analysis of microarray experiments for plant scientists. Plant Cell (2006) 1.21
Rice-arsenate interactions in hydroponics: whole genome transcriptional analysis. J Exp Bot (2008) 1.18
Defining the mitochondrial stress response in Arabidopsis thaliana. Mol Plant (2009) 1.14
Role of model plant species. Methods Mol Biol (2009) 0.89
Protective efficacy of seasonal influenza vaccination against seasonal and pandemic influenza virus infection during 2009 in Hong Kong. Clin Infect Dis (2010) 4.81
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell (2007) 2.51
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis. Plant Cell (2011) 2.16
Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants. J Biol Chem (2003) 1.96
Transmissibility of seasonal and pandemic influenza in a cohort of households in Hong Kong in 2009. Epidemiology (2011) 1.95
Protective efficacy against pandemic influenza of seasonal influenza vaccination in children in Hong Kong: a randomized controlled trial. Clin Infect Dis (2012) 1.94
Organization and regulation of mitochondrial respiration in plants. Annu Rev Plant Biol (2011) 1.82
The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. Plant Physiol (2008) 1.73
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. Plant Physiol (2009) 1.65
The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol (2009) 1.60
Alternative oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses. Biochim Biophys Acta (2006) 1.49
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Plant Cell (2010) 1.47
The emerging importance of the SPX domain-containing proteins in phosphate homeostasis. New Phytol (2012) 1.47
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol (2008) 1.45
Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell (2002) 1.44
Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana. Plant Mol Biol (2005) 1.41
Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia. Plant Physiol (2008) 1.39
Approaches to defining dual-targeted proteins in Arabidopsis. Plant J (2008) 1.37
The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress. Plant J (2009) 1.35
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell (2013) 1.34
Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation. FEBS Lett (2009) 1.29
Increased risk of noninfluenza respiratory virus infections associated with receipt of inactivated influenza vaccine. Clin Infect Dis (2012) 1.28
A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. Plant Physiol (2004) 1.27
A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis. Plant Cell (2013) 1.26
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings. Plant Physiol (2009) 1.23
Towards an analysis of the rice mitochondrial proteome. Plant Physiol (2003) 1.22
Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity. Plant Physiol (2008) 1.20
Exploring the function-location nexus: using multiple lines of evidence in defining the subcellular location of plant proteins. Plant Cell (2009) 1.20
Functional definition of outer membrane proteins involved in preprotein import into mitochondria. Plant Cell (2007) 1.19
Pentatricopeptide repeat domain protein 1 lowers the levels of mitochondrial leucine tRNAs in cells. Nucleic Acids Res (2009) 1.19
Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice. Plant Physiol (2013) 1.18
Alternative oxidase: a target and regulator of stress responses. Physiol Plant (2009) 1.18
In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Plant Physiol (2011) 1.17
Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts. FEBS J (2009) 1.17
Analysis of the alternative oxidase promoters from soybean. Plant Physiol (2003) 1.17
Open abdominal management after damage-control laparotomy for trauma: a prospective observational American Association for the Surgery of Trauma multicenter study. J Trauma Acute Care Surg (2013) 1.17
Ordered assembly of mitochondria during rice germination begins with pro-mitochondrial structures rich in components of the protein import apparatus. Plant Mol Biol (2006) 1.16
Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs. Plant Physiol (2009) 1.15
Tom22', an 8-kDa trans-site receptor in plants and protozoans, is a conserved feature of the TOM complex that appeared early in the evolution of eukaryotes. Mol Biol Evol (2004) 1.15
Characterization of the preprotein and amino acid transporter gene family in Arabidopsis. Plant Physiol (2006) 1.15
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell (2013) 1.14
Defining the mitochondrial stress response in Arabidopsis thaliana. Mol Plant (2009) 1.14
A novel in vitro system for simultaneous import of precursor proteins into mitochondria and chloroplasts. Plant J (2002) 1.13
Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. New Phytol (2011) 1.12
Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol (2011) 1.11
Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana. FEBS Lett (2008) 1.11
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell (2009) 1.10
Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol (2002) 1.10
A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor. FEBS Lett (2004) 1.10
Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol Biol (2006) 1.08
Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis. Plant Physiol (2008) 1.08
Mitochondrial biogenesis and function in Arabidopsis. Arabidopsis Book (2008) 1.06
Oxygen initiation of respiration and mitochondrial biogenesis in rice. J Biol Chem (2007) 1.06
Differential gene expression and subcellular targeting of Arabidopsis glutathione S-transferase F8 is achieved through alternative transcription start sites. J Biol Chem (2007) 1.05
Protein import into mitochondria: origins and functions today (review). Mol Membr Biol (2005) 1.05
Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination. Plant Physiol (2012) 1.05
Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves. New Phytol (2012) 1.04
Regulation of alternative oxidase gene expression in soybean. Plant Mol Biol (2002) 1.03
Phosphate homeostasis in the yeast Saccharomyces cerevisiae, the key role of the SPX domain-containing proteins. FEBS Lett (2012) 1.03
The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana. Plant J (2011) 1.03
Characterization of mitochondrial alternative NAD(P)H dehydrogenases in Arabidopsis: intraorganelle location and expression. Plant Cell Physiol (2005) 1.02
Superoxide stimulates a proton leak in potato mitochondria that is related to the activity of uncoupling protein. J Biol Chem (2003) 1.01
Characterization of the targeting signal of dual-targeted pea glutathione reductase. Plant Mol Biol (2003) 1.01
Qualitative assessment of the inferior vena cava: useful tool for the evaluation of fluid status in critically ill patients. Am Surg (2012) 1.01
Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2. Plant J (2002) 1.01
Intracellular gene transfer: reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase. Proc Natl Acad Sci U S A (2002) 1.01
A dual-targeted purple acid phosphatase in Arabidopsis thaliana moderates carbon metabolism and its overexpression leads to faster plant growth and higher seed yield. New Phytol (2012) 1.00
Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. J Exp Bot (2010) 1.00
Newfoundland rod-cone dystrophy, an early-onset retinal dystrophy, is caused by splice-junction mutations in RLBP1. Am J Hum Genet (2002) 1.00
Emergency tracheal intubation immediately following traumatic injury: an Eastern Association for the Surgery of Trauma practice management guideline. J Trauma Acute Care Surg (2012) 1.00
Chlorophyll biosynthesis. Expression of a second chl I gene of magnesium chelatase in Arabidopsis supports only limited chlorophyll synthesis. Plant Physiol (2002) 1.00
Unique components of the plant mitochondrial protein import apparatus. Biochim Biophys Acta (2012) 0.99
Prohibitins: mitochondrial partners in development and stress response. Trends Plant Sci (2010) 0.99
Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17:23 complex in Arabidopsis links mitochondrial activity and biogenesis. Plant Cell (2012) 0.97
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC Plant Biol (2010) 0.97
Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress. BMC Genomics (2013) 0.96
AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins. Plant Physiol (2013) 0.96
Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germination. Plant Physiol (2010) 0.96
Zinc-dependent intermembrane space proteins stimulate import of carrier proteins into plant mitochondria. Plant J (2002) 0.96
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. J Biol Chem (2012) 0.96
Findings of a randomized controlled trial using limited transthoracic echocardiogram (LTTE) as a hemodynamic monitoring tool in the trauma bay. J Trauma Acute Care Surg (2014) 0.95
Using next-generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities. J Pathol (2011) 0.94
Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa. New Phytol (2010) 0.94
Limited transthoracic echocardiogram: so easy any trauma attending can do it. J Trauma (2011) 0.93
Conserved and novel functions for Arabidopsis thaliana MIA40 in assembly of proteins in mitochondria and peroxisomes. J Biol Chem (2010) 0.93
Determining degradation and synthesis rates of arabidopsis proteins using the kinetics of progressive 15N labeling of two-dimensional gel-separated protein spots. Mol Cell Proteomics (2012) 0.93
Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa. BMC Plant Biol (2010) 0.93
What makes a mitochondrion? Genome Biol (2003) 0.92
Why genes persist in organelle genomes. Genome Biol (2005) 0.91
Comparison of transcriptional changes to chloroplast and mitochondrial perturbations reveals common and specific responses in Arabidopsis. Front Plant Sci (2012) 0.91
Environmental stresses inhibit and stimulate different protein import pathways in plant mitochondria. FEBS Lett (2003) 0.91