Published in Plant Cell Environ on September 23, 2009
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Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics. PLoS One (2011) 0.91
Transcriptomic and metabolic changes associated with photorespiratory ammonium accumulation in the model legume Lotus japonicus. Plant Physiol (2013) 0.84
The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol (2013) 0.83
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Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. J Exp Bot (2011) 0.76
Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress. BMC Genomics (2016) 0.76
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
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Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J (2004) 6.58
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol (2004) 4.99
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47
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A gene expression atlas of the model legume Medicago truncatula. Plant J (2008) 3.38
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiol (2004) 3.30
GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett (2005) 3.29
TagFinder for the quantitative analysis of gas chromatography--mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics (2008) 3.01
Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiol (2005) 2.99
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Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ (2007) 2.71
Symbiotic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development. Curr Biol (2005) 2.35
Metabolomic and transcriptomic stress response of Escherichia coli. Mol Syst Biol (2010) 2.04
Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry (2003) 1.99
Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. Plant J (2004) 1.99
Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants. Plant Physiol (2005) 1.89
Metabolomics of temperature stress. Physiol Plant (2008) 1.87
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep (2003) 1.76
Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell (2007) 1.71
Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family. PLoS Comput Biol (2005) 1.67
Phosphorus stress in common bean: root transcript and metabolic responses. Plant Physiol (2007) 1.65
A remorin protein interacts with symbiotic receptors and regulates bacterial infection. Proc Natl Acad Sci U S A (2010) 1.61
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling. Trends Biotechnol (2005) 1.59
DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant J (2006) 1.56
Plant metabolomics reveals conserved and divergent metabolic responses to salinity. Physiol Plant (2008) 1.56
Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis. BMC Plant Biol (2009) 1.55
Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytol (2009) 1.53
Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics (2010) 1.51
Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Res (2005) 1.50
Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants. Ann Bot (2008) 1.43
Retention index thresholds for compound matching in GC-MS metabolite profiling. J Chromatogr B Analyt Technol Biomed Life Sci (2008) 1.42
Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiol (2005) 1.40
The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotus japonicus root nodules. Plant Cell (2005) 1.38
Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants. PLoS One (2009) 1.38
Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays. Mol Plant Microbe Interact (2002) 1.37
Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane. Plant Physiol (2002) 1.34
Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. Methods Mol Biol (2007) 1.32
Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. Plant J (2007) 1.31
Legume transcription factor genes: what makes legumes so special? Plant Physiol (2009) 1.30
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods (2008) 1.27
Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics (2009) 1.27
Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism. Plant J (2010) 1.27
Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant J (2007) 1.24
GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry (2007) 1.23
A central role of abscisic acid in stress-regulated carbohydrate metabolism. PLoS One (2008) 1.23
Establishment of the Lotus japonicus Gene Expression Atlas (LjGEA) and its use to explore legume seed maturation. Plant J (2013) 1.23
Non-linear PCA: a missing data approach. Bioinformatics (2005) 1.22
AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis. Plant Physiol (2009) 1.18
An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. J Basic Microbiol (2009) 1.17
The Medicago truncatula gene expression atlas web server. BMC Bioinformatics (2009) 1.16
GmZIP1 encodes a symbiosis-specific zinc transporter in soybean. J Biol Chem (2001) 1.16
Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Mol Biol (2008) 1.15
Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Physiol (2009) 1.15
Regulation of arbuscular mycorrhization by apoplastic invertases: enhanced invertase activity in the leaf apoplast affects the symbiotic interaction. Plant J (2007) 1.14
Phospholipase C is required for the control of stomatal aperture by ABA. Plant J (2003) 1.13
Molecular and cellular characterisation of LjAMT2;1, an ammonium transporter from the model legume Lotus japonicus. Plant Mol Biol (2003) 1.12
Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol (2008) 1.12
Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis. Plant Physiol (2013) 1.12
Modulation of the major paths of carbon in photorespiratory mutants of synechocystis. PLoS One (2011) 1.12
Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods (2006) 1.12
Priming of plant innate immunity by rhizobacteria and beta-aminobutyric acid: differences and similarities in regulation. New Phytol (2009) 1.10
Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte. Plant J (2010) 1.10
Organization and metabolism of plastids and mitochondria in arbuscular mycorrhizal roots of Medicago truncatula. Plant Physiol (2005) 1.08
Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants. Plant Cell (2011) 1.07
Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis. BMC Genomics (2011) 1.07
Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium Sp. strain ORS278 and Pseudomonas syringae pv. tomato DC3000 leads to complex transcriptome changes. Mol Plant Microbe Interact (2008) 1.07
Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition. Mol Plant (2009) 1.07
Genetic and genomic analysis of legume flowers and seeds. Curr Opin Plant Biol (2006) 1.07
Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta (2005) 1.07
Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling. PLoS One (2013) 1.06
Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942. Plant Physiol (2011) 1.06
Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants. Plant Physiol (2009) 1.05
MtPAR MYB transcription factor acts as an on switch for proanthocyanidin biosynthesis in Medicago truncatula. Proc Natl Acad Sci U S A (2012) 1.05