Published in Mol Syst Biol on May 11, 2010
Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Mol Syst Biol (2013) 1.80
Cholesterol catabolism by Mycobacterium tuberculosis requires transcriptional and metabolic adaptations. Chem Biol (2012) 1.79
The use of metabolomics to dissect plant responses to abiotic stresses. Cell Mol Life Sci (2012) 1.55
Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria. Cell (2016) 1.45
Metabolomics in systems microbiology. Curr Opin Biotechnol (2010) 1.40
Aldehyde dehydrogenases in cellular responses to oxidative/electrophilic stress. Free Radic Biol Med (2012) 1.26
Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition. ISME J (2013) 1.23
Effect of essential oils on pathogenic bacteria. Pharmaceuticals (Basel) (2013) 1.20
Visualising associations between paired 'omics' data sets. BioData Min (2012) 1.14
Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress. BMC Genomics (2010) 1.13
Temporal control of self-organized pattern formation without morphogen gradients in bacteria. Mol Syst Biol (2013) 1.11
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses. BMC Genomics (2014) 1.07
A central role for thiols in plant tolerance to abiotic stress. Int J Mol Sci (2013) 1.01
Statistical methods for the analysis of high-throughput metabolomics data. Comput Struct Biotechnol J (2013) 1.00
Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome. BMC Genomics (2013) 0.98
Pathway and enzyme redundancy in putrescine catabolism in Escherichia coli. J Bacteriol (2012) 0.95
Growth rate-coordinated transcriptome reorganization in bacteria. BMC Genomics (2013) 0.95
Analysis of the compartmentalized metabolome - a validation of the non-aqueous fractionation technique. Front Plant Sci (2011) 0.93
Linking gene expression and membrane lipid composition of Arabidopsis. Plant Cell (2014) 0.91
Integration of omics: more than the sum of its parts. Cancer Metab (2016) 0.90
Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors. Front Microbiol (2014) 0.90
A systems biology approach sheds new light on Escherichia coli acid resistance. Nucleic Acids Res (2011) 0.89
Metabolic profiling of the protozoan parasite Entamoeba invadens revealed activation of unpredicted pathway during encystation. PLoS One (2012) 0.88
A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments. PLoS One (2012) 0.88
Proteomic profiling of Rhizobium tropici PRF 81: identification of conserved and specific responses to heat stress. BMC Microbiol (2012) 0.87
Bacterial transcriptome reorganization in thermal adaptive evolution. BMC Genomics (2015) 0.87
Polyphenols from olive mill waste affect biofilm formation and motility in Escherichia coli K-12. Microb Biotechnol (2014) 0.87
Identifying neighborhoods of coordinated gene expression and metabolite profiles. PLoS One (2012) 0.86
Transfer RNAs Mediate the Rapid Adaptation of Escherichia coli to Oxidative Stress. PLoS Genet (2015) 0.85
Metabolomic analysis of the salt-sensitive mutants reveals changes in amino acid and fatty acid composition important to long-term salt stress in Synechocystis sp. PCC 6803. Funct Integr Genomics (2014) 0.84
A cleavage-potentiated fragment of tear lacritin is bactericidal. J Biol Chem (2014) 0.84
Metabolic shift of Escherichia coli under salt stress in the presence of glycine betaine. Appl Environ Microbiol (2014) 0.83
Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments. Front Microbiol (2014) 0.83
Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools. PLoS One (2013) 0.83
Detection of perturbation phases and developmental stages in organisms from DNA microarray time series data. PLoS One (2011) 0.83
Pharmacogenetics meets metabolomics: discovery of tryptophan as a new endogenous OCT2 substrate related to metformin disposition. PLoS One (2012) 0.83
Sigma S-dependent antioxidant defense protects stationary-phase Escherichia coli against the bactericidal antibiotic gentamicin. Antimicrob Agents Chemother (2014) 0.82
Systems-wide analysis of acclimation responses to long-term heat stress and recovery in the photosynthetic model organism Chlamydomonas reinhardtii. Plant Cell (2014) 0.81
Gene regulatory network inference using fused LASSO on multiple data sets. Sci Rep (2016) 0.81
Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates. Biotechnol Biofuels (2014) 0.81
The complexity of gene expression dynamics revealed by permutation entropy. BMC Bioinformatics (2010) 0.81
Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. mSystems (2016) 0.80
Rationales and approaches for studying metabolism in eukaryotic microalgae. Metabolites (2014) 0.80
First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes. Mol Biol Evol (2015) 0.80
Technical and clinical aspects of cortisol as a biochemical marker of chronic stress. BMB Rep (2015) 0.80
Comparative transcriptomic profile analysis of fed-batch cultures expressing different recombinant proteins in Escherichia coli. AMB Express (2011) 0.79
Unraveling the concentration-dependent metabolic response of Pseudomonas sp. HF-1 to nicotine stress by ¹H NMR-based metabolomics. Ecotoxicology (2012) 0.79
Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Syst Biol (2012) 0.79
Metabolic adaptation and protein complexes in prokaryotes. Metabolites (2012) 0.78
Source and regulation of flux variability in Escherichia coli. BMC Syst Biol (2014) 0.78
Streptococcus mutans copes with heat stress by multiple transcriptional regulons modulating virulence and energy metabolism. Sci Rep (2015) 0.78
Quantitative HPLC-MS analysis of nucleotide sugars in plant cells following off-line SPE sample preparation. Anal Bioanal Chem (2014) 0.78
A joint analysis of transcriptomic and metabolomic data uncovers enhanced enzyme-metabolite coupling in breast cancer. Sci Rep (2016) 0.77
Escherichia coli under Ionic Silver Stress: An Integrative Approach to Explore Transcriptional, Physiological and Biochemical Responses. PLoS One (2015) 0.77
Insights from the Cold Transcriptome and Metabolome of Dendrobium officinale: Global Reprogramming of Metabolic and Gene Regulation Networks during Cold Acclimation. Front Plant Sci (2016) 0.77
Metabolic Adaptation Processes That Converge to Optimal Biomass Flux Distributions. PLoS Comput Biol (2015) 0.77
Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt temperature downshift. PLoS One (2014) 0.77
Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts. Front Microbiol (2016) 0.77
Metabolomic analysis of cold acclimation of Arctic Mesorhizobium sp. strain N33. PLoS One (2013) 0.77
Optimizing metabolite production using periodic oscillations. PLoS Comput Biol (2014) 0.77
NrdR Transcription Regulation: Global Proteome Analysis and Its Role in Escherichia coli Viability and Virulence. PLoS One (2016) 0.76
Upregulation of transcripts for metabolism in diverse environments is a shared response associated with survival and adaptation of Klebsiella pneumoniae in response to temperature extremes. Funct Integr Genomics (2014) 0.76
Comparative transcriptomic analysis reveals novel genes and regulatory mechanisms of Tetragenococcus halophilus in response to salt stress. J Ind Microbiol Biotechnol (2015) 0.76
Inactivation of metabolic genes causes short- and long-range dys-regulation in Escherichia coli metabolic network. PLoS One (2013) 0.76
Systems biology approaches to study the molecular effects of caloric restriction and polyphenols on aging processes. Genes Nutr (2015) 0.76
Metabolic Response of Escherichia coli upon Treatment with Hypochlorite at Sub-Lethal Concentrations. PLoS One (2015) 0.76
Cold-stress responses in the Antarctic basidiomycetous yeast Mrakia blollopis. R Soc Open Sci (2016) 0.75
Concurrent conditional clustering of multiple networks: COCONETS. PLoS One (2014) 0.75
A Network Biology Approach to Decipher Stress Response in Bacteria Using Escherichia coli As a Model. OMICS (2016) 0.75
Analysis and Design of Stimulus Response Curves of E. coli. Metabolites (2012) 0.75
iTAP: integrated transcriptomics and phenotype database for stress response of Escherichia coli and Saccharomyces cerevisiae. BMC Res Notes (2015) 0.75
Metabolic Investigation in Gluconacetobacter xylinus and Its Bacterial Cellulose Production under a Direct Current Electric Field. Front Microbiol (2016) 0.75
Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli. Mol Syst Biol (2017) 0.75
Evolution of a genome-encoded bias in amino acid biosynthetic pathways is a potential indicator of amino acid dynamics in the environment. Mol Biol Evol (2014) 0.75
A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information. Front Mol Biosci (2016) 0.75
Folding Optimization In Vivo Uncovers New Chaperones. J Mol Biol (2015) 0.75
Integrative FourD omics approach profiles the target network of the carbon storage regulatory system. Nucleic Acids Res (2017) 0.75
The use of minimum selectable concentrations (MSCs) for determining the selection of antimicrobial resistant bacteria. Ecotoxicology (2017) 0.75
Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling. Mol Cell Proteomics (2016) 0.75
Investigating the Influence of MoS2 Nanosheets on E. coli from Metabolomics Level. PLoS One (2016) 0.75
Estimation of psychological stress in humans: a combination of theory and practice. PLoS One (2013) 0.75
Elementary Flux Mode Analysis Revealed Cyclization Pathway as a Powerful Way for NADPH Regeneration of Central Carbon Metabolism. PLoS One (2015) 0.75
Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization. BMC Syst Biol (2017) 0.75
Adenine Addition Restores Cell Viability and Butanol Production in Clostridium saccharoperbutylacetonicum N1-4 (ATCC 13564) Cultivated at 37°C. Appl Environ Microbiol (2017) 0.75
In vivo transcription kinetics of a synthetic gene uninvolved in stress-response pathways in stressed Escherichia coli cells. PLoS One (2014) 0.75
Reconstruction of novel transcription factor regulons through inference of their binding sites. BMC Bioinformatics (2015) 0.75
Escherichia coli DNA ligase B may mitigate damage from oxidative stress. PLoS One (2017) 0.75
Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis. Extremophiles (2017) 0.75
Culture medium for enterobacteria. J Bacteriol (1974) 37.59
Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell (2000) 36.09
Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics (2002) 20.59
Posttranscriptional regulatory mechanisms in Escherichia coli. Annu Rev Biochem (1988) 7.54
Oxidative stress responses in Escherichia coli and Salmonella typhimurium. Microbiol Rev (1991) 6.86
Enrichment or depletion of a GO category within a class of genes: which test? Bioinformatics (2006) 6.44
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
OligoArray: genome-scale oligonucleotide design for microarrays. Bioinformatics (2002) 5.91
DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. J Bacteriol (2001) 5.35
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. J Bacteriol (2005) 4.86
Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell (2001) 4.42
Molecular and evolutionary basis of the cellular stress response. Annu Rev Physiol (2005) 3.85
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet (2008) 3.84
Role of inorganic polyphosphate in promoting ribosomal protein degradation by the Lon protease in E. coli. Science (2001) 3.35
Regulation of Escherichia coli fumarate reductase (frdABCD) operon expression by respiratory electron acceptors and the fnr gene product. J Bacteriol (1987) 3.22
Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol Microbiol (2002) 2.85
Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics (2004) 2.81
Conservation of the metabolomic response to starvation across two divergent microbes. Proc Natl Acad Sci U S A (2006) 2.68
Stationary-phase physiology. Annu Rev Microbiol (2004) 2.55
Transcription profiling of the stringent response in Escherichia coli. J Bacteriol (2007) 2.54
Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. J Mol Biol (2001) 2.33
Anaerobic regulation of pyruvate formate-lyase from Escherichia coli K-12. J Bacteriol (1988) 2.25
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Mol Genet Genomics (2004) 2.04
Intracellular protein breakdown in non-growing cells of Escherichia coli. Biochem J (1967) 2.03
Sampling for metabolome analysis of microorganisms. Anal Chem (2007) 1.89
integrOmics: an R package to unravel relationships between two omics datasets. Bioinformatics (2009) 1.86
Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli. Anal Biochem (2003) 1.82
Oxidative stress inactivates cobalamin-independent methionine synthase (MetE) in Escherichia coli. PLoS Biol (2004) 1.82
Identification and characterization of a two-component sensor-kinase and response-regulator system (DcuS-DcuR) controlling gene expression in response to C4-dicarboxylates in Escherichia coli. J Bacteriol (1999) 1.64
Fumarate regulation of gene expression in Escherichia coli by the DcuSR (dcuSR genes) two-component regulatory system. J Bacteriol (1998) 1.60
Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae. PLoS Comput Biol (2009) 1.47
Anaerobic regulation of the adhE gene, encoding the fermentative alcohol dehydrogenase of Escherichia coli. J Bacteriol (1993) 1.38
Genetic definition of the Escherichia coli zwf "soxbox," the DNA binding site for SoxS-mediated induction of glucose 6-phosphate dehydrogenase in response to superoxide. J Bacteriol (1995) 1.34
Another unusual type of citric acid cycle enzyme in Helicobacter pylori: the malate:quinone oxidoreductase. J Bacteriol (2000) 1.34
Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli. J Bacteriol (2004) 1.32
Carbon metabolism regulates expression of the pfl (pyruvate formate-lyase) gene in Escherichia coli. J Bacteriol (1991) 1.26
Control of nucleotide metabolism and ribosomal ribonucleic acid synthesis during nitrogen starvation of Escherichia coli. J Bacteriol (1972) 1.24
Functions of the membrane-associated and cytoplasmic malate dehydrogenases in the citric acid cycle of Escherichia coli. J Bacteriol (2000) 1.19
Transcriptional response of Escherichia coli to temperature shift. Biotechnol Prog (2005) 1.03
Global transcription and metabolic flux analysis of Escherichia coli in glucose-limited fed-batch cultivations. Appl Environ Microbiol (2008) 0.95
The fumarate/succinate antiporter DcuB of Escherichia coli is a bifunctional protein with sites for regulation of DcuS-dependent gene expression. J Biol Chem (2008) 0.94
Cloning and characterization of the Escherichia coli phosphoglycerate kinase (pgk) gene. Gene (1989) 0.92
Biological cluster evaluation for gene function prediction. J Comput Biol (2010) 0.90
Metabolomics data exploration guided by prior knowledge. Anal Chim Acta (2009) 0.83
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J (2004) 15.51
GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics (2004) 7.33
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47
PRIDE: new developments and new datasets. Nucleic Acids Res (2007) 4.42
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol (2005) 4.34
pcaMethods--a bioconductor package providing PCA methods for incomplete data. Bioinformatics (2007) 3.84
Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype. Proc Natl Acad Sci U S A (2002) 3.46
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics (2006) 3.34
Metabolite profiling: from diagnostics to systems biology. Nat Rev Mol Cell Biol (2004) 3.31
GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett (2005) 3.29
Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data. BMC Bioinformatics (2004) 2.83
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ (2009) 2.76
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci U S A (2009) 2.47
The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.44
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res (2007) 2.40
Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res (2003) 2.37
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. Plant Cell (2011) 2.13
Structural kinetic modeling of metabolic networks. Proc Natl Acad Sci U S A (2006) 1.88
Metabolomics of temperature stress. Physiol Plant (2008) 1.87
13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Anal Chem (2009) 1.85
Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. Plant Physiol (2010) 1.82
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep (2003) 1.76
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J (2007) 1.74
Learning multiple evolutionary pathways from cross-sectional data. J Comput Biol (2005) 1.74
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics (2007) 1.71
Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family. PLoS Comput Biol (2005) 1.67
Synthetic lethal metabolic targeting of cellular senescence in cancer therapy. Nature (2013) 1.66
Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc Natl Acad Sci U S A (2012) 1.61
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
Mode of inheritance of primary metabolic traits in tomato. Plant Cell (2008) 1.56
Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics (2010) 1.51
Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Res (2005) 1.50
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol (2010) 1.46
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiol (2006) 1.43
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics (2005) 1.41
TargetSearch--a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics (2009) 1.40
Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in (13)C labelled isotopes. Plant J (2004) 1.37
Elemental formula annotation of polar and lipophilic metabolites using (13) C, (15) N and (34) S isotope labelling, in combination with high-resolution mass spectrometry. Plant J (2011) 1.35
High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. Plant J (2011) 1.34
Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J Exp Bot (2005) 1.31
Starch content and yield increase as a result of altering adenylate pools in transgenic plants. Nat Biotechnol (2002) 1.30
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach. BMC Bioinformatics (2010) 1.30
The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Mol Syst Biol (2007) 1.28
The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana. PLoS Genet (2006) 1.28
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinformatics (2005) 1.27
Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis. PLoS One (2010) 1.24
Metabolite profile analysis: from raw data to regression and classification. Physiol Plant (2008) 1.24
Metabolic profiling reveals key metabolic features of renal cell carcinoma. J Cell Mol Med (2011) 1.23
Non-linear PCA: a missing data approach. Bioinformatics (2005) 1.22
Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell Environ (2009) 1.22
QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet (2010) 1.20
Estimating HIV evolutionary pathways and the genetic barrier to drug resistance. J Infect Dis (2005) 1.19
High-resolution direct infusion-based mass spectrometry in combination with whole 13C metabolome isotope labeling allows unambiguous assignment of chemical sum formulas. Anal Chem (2008) 1.18
Production of human papillomavirus type 16 virus-like particles in transgenic plants. J Virol (2003) 1.15
Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Physiol (2009) 1.15
Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. Plant J (2012) 1.14
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana. Mol Cell Proteomics (2008) 1.13
The RON1/FRY1/SAL1 gene is required for leaf morphogenesis and venation patterning in Arabidopsis. Plant Physiol (2009) 1.12
Analysis of the transient increase in cytosolic Ca2+ during the action potential of higher plants with high temporal resolution: requirement of Ca2+ transients for induction of jasmonic acid biosynthesis and PINII gene expression. Plant Cell Physiol (2004) 1.12
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics (2007) 1.11
Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant J (2009) 1.11
High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions. Plant J (2012) 1.11
Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii. Plant Physiol (2010) 1.10
Tenofovir resistance and resensitization. Antimicrob Agents Chemother (2003) 1.10
Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. Plant J (2012) 1.09
Rapid metabolic evolution in human prefrontal cortex. Proc Natl Acad Sci U S A (2011) 1.09
Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population. Plant Physiol (2011) 1.09
Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition. Mol Plant (2009) 1.07
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinformatics (2003) 1.06
Additional role of O-acetylserine as a sulfur status-independent regulator during plant growth. Plant J (2012) 1.04
Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. Plant J (2011) 1.04
Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth in Arabidopsis thaliana. Plant J (2013) 1.04
Carbon assimilation and metabolism in potato leaves deficient in plastidial phosphoglucomutase. Planta (2002) 1.03
Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws--a promising method for speeding up the kinetic modelling of complex metabolic networks. FEBS J (2009) 1.03
De novo amino acid biosynthesis in potato tubers is regulated by sucrose levels. Plant Physiol (2003) 1.03