Published in Plant J on December 09, 2009
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol (2010) 3.12
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res (2010) 2.73
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One (2011) 1.84
RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions. Nucleic Acids Res (2010) 1.79
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice. BMC Plant Biol (2011) 1.44
RiceXPro version 3.0: expanding the informatics resource for rice transcriptome. Nucleic Acids Res (2012) 1.33
Gene coexpression network analysis as a source of functional annotation for rice genes. PLoS One (2011) 1.25
Dynamic transcriptome landscape of maize embryo and endosperm development. Plant Physiol (2014) 1.24
Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice. Plant Physiol (2012) 1.24
The Rice Oligonucleotide Array Database: an atlas of rice gene expression. Rice (N Y) (2012) 1.20
A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat. Plant Physiol (2011) 1.10
Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice. Mol Plant (2010) 1.05
A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. J Exp Bot (2012) 1.05
Expression profile in rice panicle: insights into heat response mechanism at reproductive stage. PLoS One (2012) 1.03
RiceFREND: a platform for retrieving coexpressed gene networks in rice. Nucleic Acids Res (2012) 1.03
Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice. Plant Cell (2011) 1.00
Colinearity and similar expression pattern of rice DREB1s reveal their functional conservation in the cold-responsive pathway. PLoS One (2012) 1.00
Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence. BMC Plant Biol (2013) 1.00
Identification and validation of rice reference proteins for western blotting. J Exp Bot (2011) 0.99
Two novel positive cis-regulatory elements involved in green tissue-specific promoter activity in rice (Oryza sativa L ssp.). Plant Cell Rep (2012) 0.96
Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants. Plant Physiol (2013) 0.95
Organ evolution in angiosperms driven by correlated divergences of gene sequences and expression patterns. Plant Cell (2013) 0.94
Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice. BMC Genomics (2012) 0.92
Coordinated regulation of vegetative and reproductive branching in rice. Proc Natl Acad Sci U S A (2015) 0.92
Brachypodium distachyon as a new model system for understanding iron homeostasis in grasses: phylogenetic and expression analysis of Yellow Stripe-Like (YSL) transporters. Ann Bot (2011) 0.91
The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis. PLoS One (2012) 0.91
A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums. BMC Plant Biol (2014) 0.90
Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.). BMC Genomics (2015) 0.89
Identification and suppression of the p-coumaroyl CoA:hydroxycinnamyl alcohol transferase in Zea mays L. Plant J (2014) 0.88
An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population. J Exp Bot (2014) 0.86
Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice. Proc Natl Acad Sci U S A (2013) 0.86
OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth. J Exp Bot (2013) 0.86
Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice. PLoS One (2013) 0.86
Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice. Funct Integr Genomics (2012) 0.85
OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice. Planta (2011) 0.85
Comprehensive gene expression analysis of the NAC gene family under normal growth conditions, hormone treatment, and drought stress conditions in rice using near-isogenic lines (NILs) generated from crossing Aday Selection (drought tolerant) and IR64. Mol Genet Genomics (2012) 0.85
A STRESS-RESPONSIVE NAC1-regulated protein phosphatase gene rice protein phosphatase18 modulates drought and oxidative stress tolerance through abscisic acid-independent reactive oxygen species scavenging in rice. Plant Physiol (2014) 0.84
Large-scale collection and annotation of gene models for date palm (Phoenix dactylifera, L.). Plant Mol Biol (2012) 0.84
Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.). BMC Plant Biol (2010) 0.84
Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots. Front Plant Sci (2014) 0.83
Rice GH3 gene family: regulators of growth and development. Plant Signal Behav (2011) 0.83
Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice. PLoS Genet (2014) 0.83
The rice HGW gene encodes a ubiquitin-associated (UBA) domain protein that regulates heading date and grain weight. PLoS One (2012) 0.82
OsNRAMP5 contributes to manganese translocation and distribution in rice shoots. J Exp Bot (2014) 0.82
Ectopic overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) gene OsIAA4 in rice induces morphological changes and reduces responsiveness to Auxin. Int J Mol Sci (2013) 0.82
The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies. BMC Genomics (2015) 0.82
Selection and validation of reference genes for quantitative gene expression studies in Erythroxylum coca. F1000Res (2013) 0.82
Control and consequences of chromatin compaction during seed maturation in Arabidopsis thaliana. Plant Signal Behav (2012) 0.82
Comprehensive analysis of VQ motif-containing gene expression in rice defense responses to three pathogens. Plant Cell Rep (2014) 0.81
Comparative genomic analysis of NAC transcriptional factors to dissect the regulatory mechanisms for cell wall biosynthesis. BMC Bioinformatics (2012) 0.80
Insight into differential responses of upland and paddy rice to drought stress by comparative expression profiling analysis. Int J Mol Sci (2013) 0.80
The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice. PLoS One (2015) 0.80
Molecular characterization and functional analysis of "fruit-weight 2.2-like" gene family in rice. Planta (2013) 0.80
Transcriptomic and anatomical complexity of primary, seminal, and crown roots highlight root type-specific functional diversity in maize (Zea mays L.). J Exp Bot (2015) 0.79
The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements. Planta (2013) 0.79
Validation of endogenous reference genes in Buglossoides arvensis for normalizing RT-qPCR-based gene expression data. Springerplus (2015) 0.79
Genome-Wide Transcriptome Analysis of Cadmium Stress in Rice. Biomed Res Int (2016) 0.79
Overexpression of a bHLH1 Transcription Factor of Pyrus ussuriensis Confers Enhanced Cold Tolerance and Increases Expression of Stress-Responsive Genes. Front Plant Sci (2016) 0.78
Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice. PLoS One (2013) 0.78
An integrated genomic and metabolomic framework for cell wall biology in rice. BMC Genomics (2014) 0.78
Improving of Rice Blast Resistances in Japonica by Pyramiding Major R Genes. Front Plant Sci (2017) 0.77
The mature anther-preferentially expressed genes are associated with pollen fertility, pollen germination and anther dehiscence in rice. BMC Genomics (2015) 0.77
Novel green tissue-specific synthetic promoters and cis-regulatory elements in rice. Sci Rep (2015) 0.76
Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal (2013) 0.76
Genome-wide identification, evolutionary, and expression analyses of histone H3 variants in plants. Biomed Res Int (2015) 0.76
Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection. Rice (N Y) (2015) 0.76
W-box and G-box elements play important roles in early senescence of rice flag leaf. Sci Rep (2016) 0.76
Isolation and Functional Characterization of Bidirectional Promoters in Rice. Front Plant Sci (2016) 0.75
Dual use of peptide mass spectra: Protein atlas and genome annotation. Curr Plant Biol (2015) 0.75
The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation. Front Plant Sci (2016) 0.75
Rice caryopsis development I: Dynamic changes in different cell layers. J Integr Plant Biol (2015) 0.75
Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes. BMC Genomics (2015) 0.75
Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation. BMC Plant Biol (2017) 0.75
Low temperature-responsive changes in the anther transcriptome's repeat sequences are indicative of stress sensitivity and pollen sterility in rice strains. Plant Physiol (2013) 0.75
Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics. Curr Genomics (2016) 0.75
Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level. BMC Plant Biol (2014) 0.75
Reference Genes for qPCR Analysis in Resin-Tapped Adult Slash Pine As a Tool to Address the Molecular Basis of Commercial Resinosis. Front Plant Sci (2016) 0.75
Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.). PLoS One (2016) 0.75
Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice. Sci Rep (2015) 0.75
Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice. Plant Cell Rep (2017) 0.75
A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice. Front Plant Sci (2016) 0.75
Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.). Front Plant Sci (2017) 0.75
Global, regional, and national causes of child mortality in 2008: a systematic analysis. Lancet (2010) 26.48
BAY 43-9006 exhibits broad spectrum oral antitumor activity and targets the RAF/MEK/ERK pathway and receptor tyrosine kinases involved in tumor progression and angiogenesis. Cancer Res (2004) 21.36
Patterns and rates of exonic de novo mutations in autism spectrum disorders. Nature (2012) 13.71
Global burden of childhood pneumonia and diarrhoea. Lancet (2013) 9.28
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res (2002) 6.65
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet (2008) 5.64
Early inactivation of p53 tumor suppressor gene cooperating with NF1 loss induces malignant astrocytoma. Cancer Cell (2005) 5.51
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet (2006) 5.51
Synaptic, transcriptional and chromatin genes disrupted in autism. Nature (2014) 5.30
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res (2009) 4.93
Maternal deaths averted by contraceptive use: an analysis of 172 countries. Lancet (2012) 4.65
RPE65 is the isomerohydrolase in the retinoid visual cycle. Proc Natl Acad Sci U S A (2005) 4.61
Plants and people from the Early Neolithic to Shang periods in North China. Proc Natl Acad Sci U S A (2007) 4.30
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci U S A (2006) 4.09
Plasma soluble urokinase receptor levels are increased but do not distinguish primary from secondary focal segmental glomerulosclerosis. Kidney Int (2013) 3.97
Distinct memory traces for two visual features in the Drosophila brain. Nature (2006) 3.48
Drosophila PIWI associates with chromatin and interacts directly with HP1a. Genes Dev (2007) 3.46
Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol Plant Microbe Interact (2009) 3.33
Evolutionary diagnosis method for variants in personal exomes. Nat Methods (2012) 3.32
Epidemiology and etiology of childhood pneumonia in 2010: estimates of incidence, severe morbidity, mortality, underlying risk factors and causative pathogens for 192 countries. J Glob Health (2013) 3.30
MicroRNA-mediated control of oligodendrocyte differentiation. Neuron (2010) 3.24
HDAC1 and HDAC2 regulate oligodendrocyte differentiation by disrupting the beta-catenin-TCF interaction. Nat Neurosci (2009) 3.18
Hormones and menopausal status as predictors of depression in women in transition to menopause. Arch Gen Psychiatry (2004) 3.13
Reelin promoter hypermethylation in schizophrenia. Proc Natl Acad Sci U S A (2005) 3.12
High expression of PD-L1 in lung cancer may contribute to poor prognosis and tumor cells immune escape through suppressing tumor infiltrating dendritic cells maturation. Med Oncol (2010) 3.06
MiR-26a inhibits cell growth and tumorigenesis of nasopharyngeal carcinoma through repression of EZH2. Cancer Res (2011) 3.03
Epidemiology of Alzheimer's disease and other forms of dementia in China, 1990-2010: a systematic review and analysis. Lancet (2013) 3.02
Ending of preventable deaths from pneumonia and diarrhoea: an achievable goal. Lancet (2013) 2.98
Reelin, lipoprotein receptors and synaptic plasticity. Nat Rev Neurosci (2006) 2.95
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell (2013) 2.94
Reciprocal differentiation and tissue-specific pathogenesis of Th1, Th2, and Th17 cells in graft-versus-host disease. Blood (2009) 2.91
A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese. Nat Genet (2011) 2.85
Genetic and molecular bases of rice yield. Annu Rev Plant Biol (2010) 2.80
Anesthesia leads to tau hyperphosphorylation through inhibition of phosphatase activity by hypothermia. J Neurosci (2007) 2.68
A local mechanism mediates NAD-dependent protection of axon degeneration. J Cell Biol (2005) 2.64
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A (2010) 2.63
Evidence for a bimodal distribution in human communication. Proc Natl Acad Sci U S A (2010) 2.61
Neuronal transcriptome of Aplysia: neuronal compartments and circuitry. Cell (2006) 2.61
Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci U S A (2003) 2.59
Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nat Genet (2011) 2.50
Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J (2004) 2.46
Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders. Neuron (2013) 2.45
Dominance of HIV-1 subtype CRF01_AE in sexually acquired cases leads to a new epidemic in Yunnan province of China. PLoS Med (2006) 2.37
Organic cation transporters are determinants of oxaliplatin cytotoxicity. Cancer Res (2006) 2.37
BAG5 inhibits parkin and enhances dopaminergic neuron degeneration. Neuron (2004) 2.29
Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proc Natl Acad Sci U S A (2010) 2.27
Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia. Nat Genet (2012) 2.26
Toxicity of atmospheric aerosols on marine phytoplankton. Proc Natl Acad Sci U S A (2009) 2.25
Absence of donor Th17 leads to augmented Th1 differentiation and exacerbated acute graft-versus-host disease. Blood (2008) 2.24
Combinations of BRAF, MEK, and PI3K/mTOR inhibitors overcome acquired resistance to the BRAF inhibitor GSK2118436 dabrafenib, mediated by NRAS or MEK mutations. Mol Cancer Ther (2012) 2.21
Promoter mutations of an essential gene for pollen development result in disease resistance in rice. Genes Dev (2006) 2.21
Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice. Plant Cell (2008) 2.19
Meta-analysis of B vitamin supplementation on plasma homocysteine, cardiovascular and all-cause mortality. Clin Nutr (2012) 2.17
Ultraflat graphene. Nature (2009) 2.16
A killer-protector system regulates both hybrid sterility and segregation distortion in rice. Science (2012) 2.16
Identifying major depression using whole-brain functional connectivity: a multivariate pattern analysis. Brain (2012) 2.15
Meta-analysis of methylcobalamin alone and in combination with lipoic acid in patients with diabetic peripheral neuropathy. Diabetes Res Clin Pract (2013) 2.12
Oxidative and electrophilic stress induces multidrug resistance-associated protein transporters via the nuclear factor-E2-related factor-2 transcriptional pathway. Hepatology (2007) 2.11
OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling. Mol Plant Microbe Interact (2007) 2.10
VAC14 nucleates a protein complex essential for the acute interconversion of PI3P and PI(3,5)P(2) in yeast and mouse. EMBO J (2008) 2.08
Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance. Genetics (2002) 2.07
Insulin resistance in children with primary nephrotic syndrome and normal renal function. Pediatr Nephrol (2012) 2.03
The aftermath of hip fracture: discharge placement, functional status change, and mortality. Am J Epidemiol (2009) 2.02
Dietary and lifestyle changes associated with high prevalence of hyperuricemia and gout in the Shandong coastal cities of Eastern China. J Rheumatol (2008) 2.00
Rice mutant resources for gene discovery. Plant Mol Biol (2004) 1.99
Neural synchronization during face-to-face communication. J Neurosci (2012) 1.99
Spatial segregation of gamma-secretase and substrates in distinct membrane domains. J Biol Chem (2005) 1.98
Hospital episodes and physician visits: the concordance between self-reports and medicare claims. Med Care (2007) 1.96
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol Genet Genomics (2008) 1.96
Sample size calculations for evaluating a diagnostic test when the gold standard is missing at random. Stat Med (2010) 1.96
DNA methyltransferase inhibitors coordinately induce expression of the human reelin and glutamic acid decarboxylase 67 genes. Mol Pharmacol (2006) 1.95
Optimising the tissue culture conditions for high efficiency transformation of indica rice. Plant Cell Rep (2004) 1.95
Identification and expression analysis of alternatively spliced isoforms of human interleukin-23 receptor gene in normal lymphoid cells and selected tumor cells. Immunogenetics (2005) 1.95
A treatment-resistant default mode subnetwork in major depression. Biol Psychiatry (2012) 1.94
Primate-specific microRNA-637 inhibits tumorigenesis in hepatocellular carcinoma by disrupting signal transducer and activator of transcription 3 signaling. Hepatology (2011) 1.93
Improved breast cancer prognosis through the combination of clinical and genetic markers. Bioinformatics (2006) 1.93
Activation of telomerase by human cytomegalovirus. J Natl Cancer Inst (2009) 1.92
Initial Evaluation of [(18)F]DCFPyL for Prostate-Specific Membrane Antigen (PSMA)-Targeted PET Imaging of Prostate Cancer. Mol Imaging Biol (2015) 1.90
The 5p15.33 locus is associated with risk of lung adenocarcinoma in never-smoking females in Asia. PLoS Genet (2010) 1.90
Initial characterization of the glutamate-cysteine ligase modifier subunit Gclm(-/-) knockout mouse. Novel model system for a severely compromised oxidative stress response. J Biol Chem (2002) 1.87
GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers. PLoS Genet (2012) 1.86
Inactivation of NF1 in CNS causes increased glial progenitor proliferation and optic glioma formation. Development (2005) 1.85
A regulatory toolbox of MiniPromoters to drive selective expression in the brain. Proc Natl Acad Sci U S A (2010) 1.85
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One (2011) 1.84
Development of enhancer trap lines for functional analysis of the rice genome. Plant J (2003) 1.81