PubRank

Robert A Edwards

Author PubWeight™ 333.15‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The RAST Server: rapid annotations using subsystems technology. BMC Genomics 2008 175.18
2 The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 2013 29.49
3 The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res 2006 11.15
4 Functional metagenomic profiling of nine biomes. Nature 2008 11.00
5 The marine viromes of four oceanic regions. PLoS Biol 2006 10.19
6 An application of statistics to comparative metagenomics. BMC Bioinformatics 2006 6.29
7 Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Res 2008 5.12
8 Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One 2008 4.48
9 Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol 2007 4.32
10 Accessing the SEED genome databases via Web services API: tools for programmers. BMC Bioinformatics 2010 3.99
11 Linking lipid metabolism to the innate immune response in macrophages through sterol regulatory element binding protein-1a. Cell Metab 2011 3.49
12 Bacterial carbon processing by generalist species in the coastal ocean. Nature 2008 3.37
13 Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature 2008 2.70
14 Zinc sequestration by the neutrophil protein calprotectin enhances Salmonella growth in the inflamed gut. Cell Host Microbe 2012 2.66
15 Viral diversity and dynamics in an infant gut. Res Microbiol 2008 2.63
16 Metagenomic analysis of stressed coral holobionts. Environ Microbiol 2009 2.62
17 The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol 2009 2.61
18 Finding novel genes in bacterial communities isolated from the environment. Bioinformatics 2006 2.55
19 Probiotic bacteria reduce salmonella typhimurium intestinal colonization by competing for iron. Cell Host Microbe 2013 2.06
20 PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies. Nucleic Acids Res 2012 1.91
21 Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res 2010 1.91
22 Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes. J Bacteriol 2005 1.90
23 Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proc Natl Acad Sci U S A 2008 1.86
24 Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome. PLoS One 2008 1.86
25 NOTCH signaling is required for formation and self-renewal of tumor-initiating cells and for repression of secretory cell differentiation in colon cancer. Cancer Res 2010 1.85
26 Viral communities associated with healthy and bleaching corals. Environ Microbiol 2008 1.64
27 SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. PLoS One 2012 1.62
28 miR-23a promotes the transition from indolent to invasive colorectal cancer. Cancer Discov 2012 1.49
29 Robotic radical prostatectomy: a technique to reduce pT2 positive margins. Urology 2004 1.46
30 Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. J Biotechnol 2008 1.41
31 Metabolic trajectory of cellular differentiation in small intestine by Phasor Fluorescence Lifetime Microscopy of NADH. Sci Rep 2012 1.26
32 Differential roles for CXCR3 in CD4+ and CD8+ T cell trafficking following viral infection of the CNS. Eur J Immunol 2006 1.25
33 Visible fluorescent detection of proteins in polyacrylamide gels without staining. Anal Biochem 2004 1.21
34 Characterization of the ELPhiS prophage from Salmonella enterica serovar Enteritidis strain LK5. Appl Environ Microbiol 2012 1.17
35 Combining de novo and reference-guided assembly with scaffold_builder. Source Code Biol Med 2013 1.11
36 Bone marrow stem cells for urologic tissue engineering. World J Urol 2008 1.08
37 Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. PLoS One 2012 1.07
38 Circadian clock regulates the host response to Salmonella. Proc Natl Acad Sci U S A 2013 1.07
39 PHACTS, a computational approach to classifying the lifestyle of phages. Bioinformatics 2012 1.07
40 Visualization of proteins in acrylamide gels using ultraviolet illumination. Anal Biochem 2002 1.06
41 Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environ Microbiol 2011 1.05
42 TNF-α induces upregulation of EGFR expression and signaling in human colonic myofibroblasts. Am J Physiol Gastrointest Liver Physiol 2012 1.03
43 Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis. PLoS One 2012 1.02
44 A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes. BMC Evol Biol 2013 1.01
45 Low-molecular-weight protein tyrosine phosphatases of Bacillus subtilis. J Bacteriol 2005 1.01
46 Cytokine-induced alterations of α7 nicotinic receptor in colonic CD4 T cells mediate dichotomous response to nicotine in murine models of Th1/Th17- versus Th2-mediated colitis. J Immunol 2011 1.01
47 In vitro characterization of the Bacillus subtilis protein tyrosine phosphatase YwqE. J Bacteriol 2005 0.99
48 Diversification of the Salmonella fimbriae: a model of macro- and microevolution. PLoS One 2012 0.98
49 Expression of CXC chemokine ligand 10 from the mouse hepatitis virus genome results in protection from viral-induced neurological and liver disease. J Immunol 2007 0.97
50 Mutation of NIMA-related kinase 1 (NEK1) leads to chromosome instability. Mol Cancer 2011 0.96
51 Reference-independent comparative metagenomics using cross-assembly: crAss. Bioinformatics 2012 0.95
52 PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity. BMC Bioinformatics 2012 0.94
53 Microbial genomic taxonomy. BMC Genomics 2013 0.93
54 Multivariate analysis of functional metagenomes. Front Genet 2013 0.92
55 Isolation of primary myofibroblasts from mouse and human colon tissue. J Vis Exp 2013 0.91
56 Trp-999 of beta-galactosidase (Escherichia coli) is a key residue for binding, catalysis, and synthesis of allolactose, the natural lac operon inducer. Biochemistry 2003 0.90
57 Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol 2014 0.90
58 Complete Genome Sequencing of a Multidrug-Resistant and Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Genotype. Genome Announc 2015 0.89
59 Angiogenic sprouting is regulated by endothelial cell expression of Slug. J Cell Sci 2014 0.88
60 Decreased MAPK- and PGE2-dependent IL-11 production in Gialpha2-/- colonic myofibroblasts. Am J Physiol Gastrointest Liver Physiol 2007 0.87
61 Impaired TGF-beta responses in peripheral T cells of G alpha i2-/- mice. J Immunol 2005 0.87
62 Comparative study of in vivo lymphatic sealing capability of the porcine thoracic duct using laparoscopic dissection devices. J Urol 2008 0.87
63 Applying Shannon's information theory to bacterial and phage genomes and metagenomes. Sci Rep 2013 0.86
64 Evidence for differential roles for NKG2D receptor signaling in innate host defense against coronavirus-induced neurological and liver disease. J Virol 2007 0.86
65 Explaining microbial phenotypes on a genomic scale: GWAS for microbes. Brief Funct Genomics 2013 0.85
66 Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis. Genome Announc 2013 0.85
67 Development of indole chemistry to label tryptophan residues in protein for determination of tryptophan surface accessibility. Protein Sci 2007 0.84
68 Evaluation of the outcomes of electrosurgical induced bowel injury treated with tissue glue/sealant versus sutured repair in a rabbit model. J Endourol 2009 0.82
69 Genome sequence of the bacterioplanktonic, mixotrophic Vibrio campbellii strain PEL22A, isolated in the Abrolhos Bank. J Bacteriol 2012 0.81
70 Genome-wide study of the defective sucrose fermenter strain of Vibrio cholerae from the Latin American cholera epidemic. PLoS One 2012 0.81
71 Microfluidic PCR combined with pyrosequencing for identification of allelic variants with phenotypic associations among targeted Salmonella genes. Appl Environ Microbiol 2012 0.80
72 Genome sequence of the human pathogen Vibrio cholerae Amazonia. J Bacteriol 2011 0.80
73 Draft genome sequence of the shrimp pathogen Vibrio harveyi CAIM 1792. J Bacteriol 2012 0.79
74 Structure and function of a cyanophage-encoded peptide deformylase. ISME J 2013 0.79
75 Excited state photoreaction between the indole side chain of tryptophan and halocompounds generates new fluorophores and unique modifications. Photochem Photobiol 2014 0.79
76 Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9. J Bacteriol 2012 0.78
77 Muscle sarcomas and alopecia in A/J mice chronically treated with nicotine. Life Sci 2012 0.78
78 Intracellular trafficking of the KV1.3 potassium channel is regulated by the prodomain of a matrix metalloprotease. J Biol Chem 2013 0.78
79 Bovine serum albumin glutaraldehyde for completely sutureless laparoscopic heminephrectomy in a survival porcine model. J Endourol 2010 0.78
80 Comparison of healing after cystotomy and repair with fibrin glue and sutured closure in the porcine model. J Endourol 2008 0.77
81 Targeting cancer metabolism by simultaneously disrupting parallel nutrient access pathways. J Clin Invest 2016 0.76
82 Lysogeny and sporulation in Bacillus isolates from the Gulf of Mexico. Appl Environ Microbiol 2009 0.76
83 Corrigendum: Allelic variation contributes to bacterial host specificity. Nat Commun 2017 0.75
84 PMAnalyzer: a new web interface for bacterial growth curve analysis. Bioinformatics 2017 0.75
85 The 'buoy' stent: evaluation of a prototype indwelling ureteric stent in a porcine model. BJU Int 2009 0.75
86 Identification of trichloroethanol visualized proteins from two-dimensional polyacrylamide gels by mass spectrometry. Anal Chem 2006 0.75