Published in Tissue Eng Part A on April 01, 2010
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A distinct lineage of CD4 T cells regulates tissue inflammation by producing interleukin 17. Nat Immunol (2005) 27.17
Integration of biological networks and gene expression data using Cytoscape. Nat Protoc (2007) 27.10
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48
Analysis of genetic inheritance in a family quartet by whole-genome sequencing. Science (2010) 18.45
Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol (2008) 15.90
The somatic genomic landscape of glioblastoma. Cell (2013) 11.73
A genomic regulatory network for development. Science (2002) 9.67
The program of androgen-responsive genes in neoplastic prostate epithelium. Proc Natl Acad Sci U S A (2002) 5.98
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PTEN-deficient intestinal stem cells initiate intestinal polyposis. Nat Genet (2007) 4.09
Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics (2002) 3.89
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A molecular correlate to the Gleason grading system for prostate adenocarcinoma. Proc Natl Acad Sci U S A (2006) 2.89
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Dysregulated gene expression networks in human acute myelogenous leukemia stem cells. Proc Natl Acad Sci U S A (2009) 2.76
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res (2004) 2.75
Extracellular microRNA: a new source of biomarkers. Mutat Res (2011) 2.55
Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity. Genomics (2002) 2.54
Structural and genetic diversity of group B streptococcus capsular polysaccharides. Infect Immun (2005) 2.51
The relationship of 5HTT (SLC6A4) methylation and genotype on mRNA expression and liability to major depression and alcohol dependence in subjects from the Iowa Adoption Studies. Am J Med Genet B Neuropsychiatr Genet (2008) 2.44
Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas. Proc Natl Acad Sci U S A (2007) 2.38
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Dev Biol (2002) 2.26
Regulatory gene networks and the properties of the developmental process. Proc Natl Acad Sci U S A (2003) 2.24
Hematopoietic stem cells contribute to the regeneration of renal tubules after renal ischemia-reperfusion injury in mice. J Am Soc Nephrol (2003) 2.12
The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low). Microbiology (2003) 2.10
The DNA sequence and analysis of human chromosome 14. Nature (2003) 2.02
MAOA methylation is associated with nicotine and alcohol dependence in women. Am J Med Genet B Neuropsychiatr Genet (2008) 1.97
Serotonin transporter mRNA levels are associated with the methylation of an upstream CpG island. Am J Med Genet B Neuropsychiatr Genet (2007) 1.97
A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics. Am J Hum Genet (2005) 1.96
Genetic effects on age-dependent onset and islet cell autoantibody markers in type 1 diabetes. Diabetes (2002) 1.89
The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. BMC Genomics (2011) 1.79
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Single-cell proteomic chip for profiling intracellular signaling pathways in single tumor cells. Proc Natl Acad Sci U S A (2011) 1.76
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res (2004) 1.74
Boosting signal-to-noise in complex biology: prior knowledge is power. Cell (2011) 1.71
Pooled genome linkage scan of aggressive prostate cancer: results from the International Consortium for Prostate Cancer Genetics. Hum Genet (2006) 1.70
Differential gene expression profiling of adult murine hematopoietic stem cells. Blood (2002) 1.69
A blood-based proteomic classifier for the molecular characterization of pulmonary nodules. Sci Transl Med (2013) 1.69
Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. PLoS One (2009) 1.68
Proteomic analysis identifies that 14-3-3zeta interacts with beta-catenin and facilitates its activation by Akt. Proc Natl Acad Sci U S A (2004) 1.66
Chromosomal haplotypes by genetic phasing of human families. Am J Hum Genet (2011) 1.58
Foreword: from the TRANSCRIPTOME conferences to the SYSTEMOSCOPE international consortium. C R Biol (2004) 1.58
Detailed transcriptome atlas of the pancreatic beta cell. BMC Med Genomics (2009) 1.55
Activated Notch4 inhibits angiogenesis: role of beta 1-integrin activation. Mol Cell Biol (2002) 1.52
Genetic mapping at 3-kilobase resolution reveals inositol 1,4,5-triphosphate receptor 3 as a risk factor for type 1 diabetes in Sweden. Am J Hum Genet (2006) 1.50
Genome-wide analysis of epigenetic silencing identifies BEX1 and BEX2 as candidate tumor suppressor genes in malignant glioma. Cancer Res (2006) 1.50
Analysis of the DNA sequence and duplication history of human chromosome 15. Nature (2006) 1.50
Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics. Mol Cell Proteomics (2006) 1.49
Kaviar: an accessible system for testing SNV novelty. Bioinformatics (2011) 1.47
Proteomic analysis of human prostasomes. Prostate (2003) 1.45
Cancer as robust intrinsic state of endogenous molecular-cellular network shaped by evolution. Med Hypotheses (2007) 1.39
Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Res (2005) 1.39
Massively parallel signature sequencing and bioinformatics analysis identifies up-regulation of TGFBI and SOX4 in human glioblastoma. PLoS One (2010) 1.39
Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC). PLoS Comput Biol (2010) 1.38
Unusual gene order and organization of the sea urchin hox cluster. J Exp Zool B Mol Dev Evol (2006) 1.34
High-throughput chemical screens identify disulfiram as an inhibitor of human glioblastoma stem cells. Oncotarget (2012) 1.34
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. Genome Res (2003) 1.32
Silencing SOX2 induced mesenchymal-epithelial transition and its expression predicts liver and lymph node metastasis of CRC patients. PLoS One (2012) 1.31
Proteins associated with Cisplatin resistance in ovarian cancer cells identified by quantitative proteomic technology and integrated with mRNA expression levels. Mol Cell Proteomics (2005) 1.30
Comprehensive analysis of MGMT promoter methylation: correlation with MGMT expression and clinical response in GBM. PLoS One (2011) 1.27
Role of MED12 in transcription and human behavior. Pharmacogenomics (2007) 1.26
Sequence analysis of mouse vomeronasal receptor gene clusters reveals common promoter motifs and a history of recent expansion. Proc Natl Acad Sci U S A (2001) 1.26
Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1. Genome Biol (2004) 1.25
ACGT-a comparative genomics tool. Bioinformatics (2003) 1.21
From functional genomics to systems biology: concepts and practices. C R Biol (2004) 1.20
Bridging the BMP and Wnt pathways by PI3 kinase/Akt and 14-3-3zeta. Cell Cycle (2005) 1.20
Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells. Mol Cell Proteomics (2007) 1.20
Ex vivo expansion of human mesenchymal stem cells in defined serum-free media. Stem Cells Int (2012) 1.20
Dickkopf-1 is an epigenetically silenced candidate tumor suppressor gene in medulloblastoma. Neuro Oncol (2007) 1.16
Elevated expression of DKK1 is associated with cytoplasmic/nuclear beta-catenin accumulation and poor prognosis in hepatocellular carcinomas. J Hepatol (2009) 1.16
Targeting stem cells-clinical implications for cancer therapy. Curr Stem Cell Res Ther (2009) 1.15
A third approach to gene prediction suggests thousands of additional human transcribed regions. PLoS Comput Biol (2006) 1.15
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol Cell Proteomics (2003) 1.15
Genomic scan of 254 hereditary prostate cancer families. Prostate (2003) 1.14
Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. J Bacteriol (2003) 1.13
Long-range multilocus haplotype phasing of the MHC. Proc Natl Acad Sci U S A (2006) 1.12
Predictive, preventive, personalized and participatory medicine: back to the future. Genome Med (2010) 1.12
SRM targeted proteomics in search for biomarkers of HCV-induced progression of fibrosis to cirrhosis in HALT-C patients. Proteomics (2012) 1.11
Low-pass sequencing for microbial comparative genomics. BMC Genomics (2004) 1.11
Electrochemically programmed, spatially selective biofunctionalization of silicon wires. Langmuir (2004) 1.11
Pillars article: Transgenic mice that express a myelin basic protein-specific T cell receptor develop spontaneous autoimmunity. Cell. 1993. 72: 551-560. J Immunol (2013) 1.07
Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain. Proc Natl Acad Sci U S A (2013) 1.06
Transcriptional profiling of subjects from the Iowa adoption studies. Am J Med Genet B Neuropsychiatr Genet (2007) 1.05
ERG upregulation and related ETS transcription factors in prostate cancer. Int J Oncol (2007) 1.05