Published in Nat Protoc on January 01, 2007
Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (2010) 26.76
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res (2010) 18.73
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res (2008) 15.69
Functional impact of global rare copy number variation in autism spectrum disorders. Nature (2010) 14.66
PID: the Pathway Interaction Database. Nucleic Acids Res (2008) 12.92
BioMart--biological queries made easy. BMC Genomics (2009) 11.06
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One (2011) 8.65
The BioGRID Interaction Database: 2011 update. Nucleic Acids Res (2010) 8.46
MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins. Nat Cell Biol (2011) 8.21
WikiPathways: pathway editing for the people. PLoS Biol (2008) 8.13
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS One (2010) 6.61
A travel guide to Cytoscape plugins. Nat Methods (2012) 6.53
Constructing genomic maps of positive selection in humans: where do we go from here? Genome Res (2009) 5.88
Inheritance of coronary artery disease in men: an analysis of the role of the Y chromosome. Lancet (2012) 5.16
AlleleSeq: analysis of allele-specific expression and binding in a network framework. Mol Syst Biol (2011) 4.71
Visualization of omics data for systems biology. Nat Methods (2010) 4.59
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol Cell Proteomics (2011) 4.40
Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Res (2011) 4.39
Presenting and exploring biological pathways with PathVisio. BMC Bioinformatics (2008) 4.34
Transcriptome-based network analysis reveals a spectrum model of human macrophage activation. Immunity (2014) 3.94
Pathway and network-based analysis of genome-wide association studies in multiple sclerosis. Hum Mol Genet (2009) 3.92
An expanded Oct4 interaction network: implications for stem cell biology, development, and disease. Cell Stem Cell (2010) 3.60
Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A (2012) 3.56
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. Nat Genet (2013) 3.39
New gene functions in megakaryopoiesis and platelet formation. Nature (2011) 3.14
Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut. Nat Med (2011) 3.06
Identifying functional modules in protein-protein interaction networks: an integrated exact approach. Bioinformatics (2008) 3.00
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell (2013) 2.94
VisANT: an integrative framework for networks in systems biology. Brief Bioinform (2008) 2.85
ConsensusPathDB--a database for integrating human functional interaction networks. Nucleic Acids Res (2008) 2.77
Sequencing our way towards understanding global eukaryotic biodiversity. Trends Ecol Evol (2012) 2.70
Network visualization and analysis of gene expression data using BioLayout Express(3D). Nat Protoc (2009) 2.66
Integrated network analysis platform for protein-protein interactions. Nat Methods (2008) 2.63
Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism. Mol Syst Biol (2010) 2.60
The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res (2015) 2.60
clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics (2011) 2.56
Microfluidic devices for measuring gene network dynamics in single cells. Nat Rev Genet (2009) 2.52
iPath2.0: interactive pathway explorer. Nucleic Acids Res (2011) 2.50
Functional maps of protein complexes from quantitative genetic interaction data. PLoS Comput Biol (2008) 2.46
Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS. Nat Neurosci (2015) 2.42
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res (2010) 2.41
A decade of systems biology. Annu Rev Cell Dev Biol (2010) 2.30
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ Microbiol (2010) 2.23
Visualizing multidimensional cancer genomics data. Genome Med (2013) 2.19
Mining biological pathways using WikiPathways web services. PLoS One (2009) 2.17
Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage. Nature (2015) 2.16
MS/MS networking guided analysis of molecule and gene cluster families. Proc Natl Acad Sci U S A (2013) 2.12
Expander: from expression microarrays to networks and functions. Nat Protoc (2010) 2.12
Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization. Cell Res (2012) 2.09
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. Nucleic Acids Res (2010) 1.95
Analyzing biological network parameters with CentiScaPe. Bioinformatics (2009) 1.91
The landscape of somatic mutations in epigenetic regulators across 1,000 paediatric cancer genomes. Nat Commun (2014) 1.90
Haem-activated promiscuous targeting of artemisinin in Plasmodium falciparum. Nat Commun (2015) 1.90
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol (2009) 1.90
Association of lipidome remodeling in the adipocyte membrane with acquired obesity in humans. PLoS Biol (2011) 1.89
Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development. Development (2011) 1.88
Systems biology of innate immunity. Immunol Rev (2009) 1.87
The Enzyme Function Initiative. Biochemistry (2011) 1.87
ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients. Genes Dev (2013) 1.87
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. Nucleic Acids Res (2010) 1.86
Topological analysis and interactive visualization of biological networks and protein structures. Nat Protoc (2012) 1.82
Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways. J Plant Res (2010) 1.82
Regulation of the human catalytic subunit of telomerase (hTERT). Gene (2012) 1.81
Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes. Mol Cell Proteomics (2010) 1.77
GPCRDB: information system for G protein-coupled receptors. Nucleic Acids Res (2010) 1.77
Expression profiling of human immune cell subsets identifies miRNA-mRNA regulatory relationships correlated with cell type specific expression. PLoS One (2012) 1.76
An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell. Mol Syst Biol (2009) 1.75
Integrative biology identifies shared transcriptional networks in CKD. J Am Soc Nephrol (2014) 1.71
An in-depth map of polyadenylation sites in cancer. Nucleic Acids Res (2012) 1.71
Architecture of the large subunit of the mammalian mitochondrial ribosome. Nature (2013) 1.69
How to visually interpret biological data using networks. Nat Biotechnol (2009) 1.66
Assembling global maps of cellular function through integrative analysis of physical and genetic networks. Nat Protoc (2011) 1.66
DASMI: exchanging, annotating and assessing molecular interaction data. Bioinformatics (2009) 1.64
Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance. PLoS One (2010) 1.64
Associations between pathogens in the upper respiratory tract of young children: interplay between viruses and bacteria. PLoS One (2012) 1.63
Regulation of alternative splicing by the core spliceosomal machinery. Genes Dev (2011) 1.60
Predicting genetic modifier loci using functional gene networks. Genome Res (2010) 1.59
Predicting metabolic biomarkers of human inborn errors of metabolism. Mol Syst Biol (2009) 1.59
Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes. Genome Res (2011) 1.58
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid. BMC Genomics (2011) 1.57
Complement protein C1q directs macrophage polarization and limits inflammasome activity during the uptake of apoptotic cells. J Immunol (2012) 1.57
Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors. PLoS Comput Biol (2009) 1.57
Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis. Nat Commun (2011) 1.56
Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. Mol Cell Proteomics (2012) 1.55
Retracted Predicting new molecular targets for rhein using network pharmacology. BMC Syst Biol (2012) 1.55
Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science (2012) 1.52
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat Protoc (2010) 1.51
Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions. Plant Physiol (2011) 1.51
Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History. PLoS Biol (2016) 1.51
Unbiased RNAi screen for hepcidin regulators links hepcidin suppression to proliferative Ras/RAF and nutrient-dependent mTOR signaling. Blood (2014) 1.50
Using biological pathway data with paxtools. PLoS Comput Biol (2013) 1.50
COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res (2010) 1.50
Genomic and network patterns of schizophrenia genetic variation in human evolutionary accelerated regions. Mol Biol Evol (2015) 1.48
A mitochondrial RNAi screen defines cellular bioenergetic determinants and identifies an adenylate kinase as a key regulator of ATP levels. Cell Rep (2014) 1.48
Navigating the network: signaling cross-talk in hematopoietic cells. Nat Immunol (2009) 1.48
Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data. PLoS Comput Biol (2010) 1.47
Merck Ad5/HIV induces broad innate immune activation that predicts CD8⁺ T-cell responses but is attenuated by preexisting Ad5 immunity. Proc Natl Acad Sci U S A (2012) 1.46
The Cardiac TBX5 Interactome Reveals a Chromatin Remodeling Network Essential for Cardiac Septation. Dev Cell (2016) 1.45
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Res (2012) 1.45
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A (2005) 167.46
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Genome-wide mapping of in vivo protein-DNA interactions. Science (2007) 64.92
Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74
Global analysis of protein expression in yeast. Nature (2003) 34.15
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature (2006) 24.29
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics (2005) 24.04
GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol (2003) 22.63
Global mapping of the yeast genetic interaction network. Science (2004) 21.34
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol (2003) 20.83
Reactome: a knowledgebase of biological pathways. Nucleic Acids Res (2005) 20.05
MINT: a Molecular INTeraction database. FEBS Lett (2002) 17.21
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science (2001) 17.11
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics (2003) 15.42
IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet (2002) 14.69
Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics (2002) 12.88
Human protein reference database--2006 update. Nucleic Acids Res (2006) 12.16
Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res (2004) 9.99
ArrayExpress--a public database of microarray experiments and gene expression profiles. Nucleic Acids Res (2006) 8.92
Conserved patterns of protein interaction in multiple species. Proc Natl Acad Sci U S A (2005) 7.48
A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell (2006) 6.61
Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4. Nature (2006) 6.28
Osprey: a network visualization system. Genome Biol (2003) 6.23
Pathguide: a pathway resource list. Nucleic Acids Res (2006) 6.05
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell (2006) 5.72
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol (2007) 5.63
Systematic interpretation of genetic interactions using protein networks. Nat Biotechnol (2005) 5.38
Dynamic complex formation during the yeast cell cycle. Science (2005) 5.11
The HUGO Gene Nomenclature Database, 2006 updates. Nucleic Acids Res (2006) 5.02
Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol (2006) 4.30
Probabilistic model of the human protein-protein interaction network. Nat Biotechnol (2005) 3.99
Reverse engineering cellular networks. Nat Protoc (2006) 3.67
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. Nature (2005) 3.62
How reliable are experimental protein-protein interaction data? J Mol Biol (2003) 3.59
Text-mining and information-retrieval services for molecular biology. Genome Biol (2005) 3.54
Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. Bioinformatics (2007) 3.39
Systems biology in drug discovery. Nat Biotechnol (2004) 3.29
Roundup: a multi-genome repository of orthologs and evolutionary distances. Bioinformatics (2006) 3.28
The Kyoto encyclopedia of genes and genomes--KEGG. Yeast (2000) 3.27
VisANT: data-integrating visual framework for biological networks and modules. Nucleic Acids Res (2005) 3.24
cPath: open source software for collecting, storing, and querying biological pathways. BMC Bioinformatics (2006) 3.24
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics (2002) 2.93
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res (2006) 2.77
BioNetBuilder: automatic integration of biological networks. Bioinformatics (2006) 2.76
Derivation of genetic interaction networks from quantitative phenotype data. Genome Biol (2005) 2.74
Modular organization of protein interaction networks. Bioinformatics (2006) 2.68
Pathway analysis of coronary atherosclerosis. Physiol Genomics (2005) 2.59
ProViz: protein interaction visualization and exploration. Bioinformatics (2004) 2.48
Functional genomics and proteomics: charting a multidimensional map of the yeast cell. Trends Cell Biol (2003) 2.46
Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. Genome Biol (2007) 2.45
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinformatics (2006) 2.37
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification. Genome Biol (2006) 2.27
BioLayout(Java): versatile network visualisation of structural and functional relationships. Appl Bioinformatics (2005) 2.26
Validation and refinement of gene-regulatory pathways on a network of physical interactions. Genome Biol (2005) 2.03
PIANA: protein interactions and network analysis. Bioinformatics (2006) 1.99
NetMatch: a Cytoscape plugin for searching biological networks. Bioinformatics (2007) 1.96
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinformatics (2006) 1.76
Estimating and improving protein interaction error rates. Proc IEEE Comput Syst Bioinform Conf (2004) 1.67
GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks. Bioinformatics (2006) 1.55
An architecture for biological information extraction and representation. Bioinformatics (2004) 1.54
MetaNetwork: a computational protocol for the genetic study of metabolic networks. Nat Protoc (2007) 1.50
The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins. Bioinformatics (2007) 1.49
Stable evolutionary signal in a yeast protein interaction network. BMC Evol Biol (2006) 1.45
Representing, storing and accessing molecular interaction data: a review of models and tools. Brief Bioinform (2006) 1.39
Global studies of cell type-specific gene expression in plants. Annu Rev Plant Biol (2006) 1.33
CABIN: collective analysis of biological interaction networks. Comput Biol Chem (2007) 1.27
Decomposing protein networks into domain-domain interactions. Bioinformatics (2005) 1.22
Weighing our measures of gene expression. Mol Syst Biol (2006) 1.21
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature (2002) 37.66
Human MicroRNA targets. PLoS Biol (2004) 34.51
A mammalian microRNA expression atlas based on small RNA library sequencing. Cell (2007) 34.03
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol (2013) 32.42
A distinct lineage of CD4 T cells regulates tissue inflammation by producing interleukin 17. Nat Immunol (2005) 27.17
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov (2012) 26.98
Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (2010) 26.76
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics (2005) 24.04
Integrative genomic profiling of human prostate cancer. Cancer Cell (2010) 23.61
MicroRNA targets in Drosophila. Genome Biol (2003) 23.59
Global mapping of the yeast genetic interaction network. Science (2004) 21.34
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol (2003) 20.83
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59
International network of cancer genome projects. Nature (2010) 20.35
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal (2013) 19.54
Analysis of genetic inheritance in a family quartet by whole-genome sequencing. Science (2010) 18.45
The genetic landscape of a cell. Science (2010) 16.52
The microRNA.org resource: targets and expression. Nucleic Acids Res (2007) 16.26
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol (2008) 15.90
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet (2002) 14.69
Functional impact of global rare copy number variation in autism spectrum disorders. Nature (2010) 14.66
Characterizing gene sets with FuncAssociate. Bioinformatics (2003) 14.10
Identification of microRNAs of the herpesvirus family. Nat Methods (2005) 12.98
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics (2002) 12.88
Identification of virus-encoded microRNAs. Science (2004) 12.56
Network-based classification of breast cancer metastasis. Mol Syst Biol (2007) 12.18
The somatic genomic landscape of glioblastoma. Cell (2013) 11.73
The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet (2013) 11.29
Predicting the functional impact of protein mutations: application to cancer genomics. Nucleic Acids Res (2011) 10.99
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res (2010) 10.97
Cytoscape Web: an interactive web-based network browser. Bioinformatics (2010) 10.03
A genomic regulatory network for development. Science (2002) 9.67
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res (2010) 9.18
A novel class of small RNAs bind to MILI protein in mouse testes. Nature (2006) 8.80
The Systems Biology Graphical Notation. Nat Biotechnol (2009) 8.53
Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication. Cell (2008) 8.41
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
WikiPathways: pathway editing for the people. PLoS Biol (2008) 8.13
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
Conserved patterns of protein interaction in multiple species. Proc Natl Acad Sci U S A (2005) 7.48
Mutual exclusivity analysis identifies oncogenic network modules. Genome Res (2011) 7.22
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol (2010) 7.15
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science (2001) 7.08
Transcriptional regulation of protein complexes within and across species. Proc Natl Acad Sci U S A (2007) 7.07
Cellular cofactors affecting hepatitis C virus infection and replication. Proc Natl Acad Sci U S A (2007) 6.79
(V600E)BRAF is associated with disabled feedback inhibition of RAF-MEK signaling and elevated transcriptional output of the pathway. Proc Natl Acad Sci U S A (2009) 6.78
Genome sequencing identifies a basis for everolimus sensitivity. Science (2012) 6.71
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS One (2010) 6.61
A travel guide to Cytoscape plugins. Nat Methods (2012) 6.53
Emerging landscape of oncogenic signatures across human cancers. Nat Genet (2013) 6.48
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1. RNA Biol (2004) 6.44
PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine. BMC Bioinformatics (2003) 6.31
An atlas of combinatorial transcriptional regulation in mouse and man. Cell (2010) 6.24
Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy. Nat Genet (2010) 6.10
Pathguide: a pathway resource list. Nucleic Acids Res (2006) 6.05
The program of androgen-responsive genes in neoplastic prostate epithelium. Proc Natl Acad Sci U S A (2002) 5.98
Fast statistical alignment. PLoS Comput Biol (2009) 5.92
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. N Engl J Med (2015) 5.71
Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping. Mol Cancer Res (2002) 5.42
Systematic interpretation of genetic interactions using protein networks. Nat Biotechnol (2005) 5.38
Cooperativity of TMPRSS2-ERG with PI3-kinase pathway activation in prostate oncogenesis. Nat Genet (2009) 5.31
Human host factors required for influenza virus replication. Nature (2010) 5.28
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Genome Biol (2006) 5.22
Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility. Nat Genet (2009) 5.13
Glioma Groups Based on 1p/19q, IDH, and TERT Promoter Mutations in Tumors. N Engl J Med (2015) 5.03
PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods (2011) 5.01
Modeling cellular machinery through biological network comparison. Nat Biotechnol (2006) 5.01
Modeling gene and genome duplications in eukaryotes. Proc Natl Acad Sci U S A (2005) 5.00
GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics (2007) 4.97
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci U S A (2002) 4.96
MicroRNA profiling of the murine hematopoietic system. Genome Biol (2005) 4.94