Published in BMC Plant Biol on December 23, 2009
Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons. Genome Biol Evol (2011) 0.88
The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads. BMC Genomics (2013) 0.87
Transcriptional dynamics of LTR retrotransposons in early generation and ancient sunflower hybrids. Genome Biol Evol (2013) 0.83
Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (Helianthus annuus) Genotypes. Genome Biol Evol (2015) 0.80
Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome. Biology (Basel) (2014) 0.79
Long Terminal Repeat Retrotransposon Content in Eight Diploid Sunflower Species Inferred from Next-Generation Sequence Data. G3 (Bethesda) (2016) 0.75
Recent and dynamic transposable elements contribute to genomic divergence under asexuality. BMC Genomics (2016) 0.75
EARE-1, a Transcriptionally Active Ty1/Copia-Like Retrotransposon Has Colonized the Genome of Excoecaria agallocha through Horizontal Transfer. Front Plant Sci (2017) 0.75
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science (2002) 17.04
Improved method for the isolation of RNA from plant tissues. Anal Biochem (1987) 16.74
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics (1999) 14.86
Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res (1999) 13.02
A distinct small RNA pathway silences selfish genetic elements in the germline. Science (2006) 11.63
The significance of responses of the genome to challenge. Science (1984) 11.29
Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet (2007) 7.14
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet (2002) 4.67
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res (2001) 4.17
Retrotransposons of rice involved in mutations induced by tissue culture. Proc Natl Acad Sci U S A (1996) 4.00
A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nat Genet (2006) 3.97
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev Cell (2004) 3.85
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci U S A (2000) 3.30
Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell (2005) 3.17
Retrotransposon-induced mutations in grape skin color. Science (2004) 3.16
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res (2006) 3.02
copia-like retrotransposons are ubiquitous among plants. Proc Natl Acad Sci U S A (1992) 2.49
Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol (2009) 2.41
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr Biol (2006) 2.15
Activation of tobacco retrotransposons during tissue culture. EMBO J (1993) 2.13
Diversity and similarity among recognition sequences of Dof transcription factors. Plant J (1999) 1.94
Transposable elements and the plant pan-genomes. Curr Opin Plant Biol (2007) 1.64
RNA-directed DNA methylation mediated by DRD1 and Pol IVb: a versatile pathway for transcriptional gene silencing in plants. Biochim Biophys Acta (2007) 1.53
Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc Natl Acad Sci U S A (2001) 1.51
Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J (1998) 1.49
Active retrotransposons are a common feature of grass genomes. Plant Physiol (2001) 1.49
Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae. Cytogenet Genome Res (2005) 1.45
cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene. Plant Cell (2004) 1.42
Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics (2004) 1.36
The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets. Mol Genet Genomics (2001) 1.30
rasiRNA pathway controls antisense expression of Drosophila telomeric retrotransposons in the nucleus. Nucleic Acids Res (2008) 1.19
Nuclear factors interact with a soybean beta-conglycinin enhancer. Plant Cell (1989) 1.18
Cassandra retrotransposons carry independently transcribed 5S RNA. Proc Natl Acad Sci U S A (2008) 1.18
Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome. Plant Cell (2005) 1.14
IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat Protoc (2006) 1.05
Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data. BMC Biol (2009) 1.02
Life without GAG: the BARE-2 retrotransposon as a parasite's parasite. Gene (2006) 0.94
Ty1 /copia- and Ty3 /gypsy-like DNA sequences in Helianthus species. Chromosoma (2002) 0.90
Genetic variability in sunflower (Helianthus annuus L.) and in the Helianthus genus as assessed by retrotransposon-based molecular markers. Theor Appl Genet (2009) 0.89
Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet (2009) 0.87
Nuclear DNA changes within Helianthus annuus L.: cytophotometric, karyological and biochemical analyses. Theor Appl Genet (1986) 0.85
Retrotransposon sequence variation in four asexual plant species. J Mol Evol (2006) 0.81
Both sense and antisense strands of the LTR of the Schistosoma mansoni Pao-like retrotransposon Sinbad drive luciferase expression. Mol Genet Genomics (2006) 0.77
Acclimation to different depths by the marine angiosperm Posidonia oceanica: transcriptomic and proteomic profiles. Front Plant Sci (2013) 0.91
The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads. BMC Genomics (2013) 0.87
Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet (2009) 0.87
Isolation and expression analysis of low temperature-induced genes in white poplar (Populus alba). J Plant Physiol (2009) 0.84
Fully integrated biochip platforms for advanced healthcare. Sensors (Basel) (2012) 0.83
The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome. Genome Biol Evol (2014) 0.82
Modelling and control of HIV dynamics. Comput Methods Programs Biomed (2007) 0.80
Isolation and expression of two aquaporin-encoding genes from the marine phanerogam Posidonia oceanica. Plant Cell Physiol (2004) 0.80
High-performance multipanel biosensors based on a selective integration of nanographite petals. Nano Lett (2014) 0.79
New insights for using self-assembly materials to improve the detection stability in label-free DNA-chip and immuno-sensors. Biosens Bioelectron (2008) 0.77
Copper excess triggers phospholipase D activity in wheat roots. Phytochemistry (2006) 0.77
Light induces expression of a dehydrin-encoding gene during seedling de-etiolation in sunflower (Helianthus annuus L.). J Plant Physiol (2006) 0.76
The harsh life of an urban tree: the effect of a single pulse of ozone in salt-stressed Quercus ilex saplings. Tree Physiol (2016) 0.76
Potential applications of next generation sequencing to the genomics of Posidonia oceanica. Front Plant Sci (2012) 0.75
In-Vivo Validation of Fully Implantable Multi-Panel Devices for Remote Monitoring of Metabolism. IEEE Trans Biomed Circuits Syst (2016) 0.75
An integrated control and readout circuit for implantable multi-target electrochemical biosensing. IEEE Trans Biomed Circuits Syst (2014) 0.75
In-Vivo Validation of Fully Implantable Multi-Panel Devices for Remote Monitoring of Metabolism. IEEE Trans Biomed Circuits Syst (2016) 0.75