Published in Genome Biol on December 29, 2009
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Regulation of Arabidopsis embryo and endosperm development by the polypeptide signaling molecule CLE8. Plant Cell (2012) 1.14
Evolutionarily conserved repressive activity of WOX proteins mediates leaf blade outgrowth and floral organ development in plants. Proc Natl Acad Sci U S A (2012) 1.07
Control of plant stem cell function by conserved interacting transcriptional regulators. Nature (2014) 1.02
Origins and evolution of WUSCHEL-related homeobox protein family in plant kingdom. ScientificWorldJournal (2014) 0.95
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WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation. BMC Genomics (2014) 0.85
The role of WOX genes in flower development. Ann Bot (2014) 0.85
Genome-wide analysis of homeobox gene family in legumes: identification, gene duplication and expression profiling. PLoS One (2015) 0.84
Control of dicot leaf blade expansion by a WOX gene, STF. Plant Signal Behav (2011) 0.84
Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J Exp Bot (2014) 0.82
Mapping of two suppressors of OVATE (sov) loci in tomato. Heredity (Edinb) (2013) 0.82
Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol (2016) 0.82
Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet (2014) 0.81
Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors. Proc Natl Acad Sci U S A (2015) 0.81
Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction. Nat Genet (2017) 0.81
Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors. BMC Plant Biol (2015) 0.81
Systematic deletion of homeobox genes in Podospora anserina uncovers their roles in shaping the fruiting body. PLoS One (2012) 0.80
Genome-wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana. J Exp Bot (2015) 0.80
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Identification and expression dynamics of three WUSCHEL related homeobox 13 (WOX13) genes in peanut. Dev Genes Evol (2015) 0.78
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WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce. BMC Plant Biol (2016) 0.77
The WUSCHEL-RELATED HOMEOBOX 3 gene PaWOX3 regulates lateral organ formation in Norway spruce. New Phytol (2015) 0.77
Global transcriptomics identification and analysis of transcriptional factors in different tissues of the paper mulberry. BMC Plant Biol (2014) 0.77
Genome-Wide Analysis Suggests the Relaxed Purifying Selection Affect the Evolution of WOX Genes in Pyrus bretschneideri, Prunus persica, Prunus mume, and Fragaria vesca. Front Genet (2017) 0.76
Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium. BMC Genomics (2016) 0.76
STENOFOLIA acts as a repressor in regulating leaf blade outgrowth. Plant Signal Behav (2013) 0.76
The Arabidopsis Polycomb Repressive Complex 1 (PRC1) components AtBMI1A, B and C impact gene networks throughout all stages of plant development. Plant Physiol (2016) 0.76
Contribution of WUSCHEL-related homeobox (WOX) genes to identify the phylogenetic relationships among Petunia species. Genet Mol Biol (2016) 0.75
Overexpression of the WOX gene STENOFOLIA improves biomass yield and sugar release in transgenic grasses and display altered cytokinin homeostasis. PLoS Genet (2017) 0.75
Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice. G3 (Bethesda) (2016) 0.75
Characterization and expression analysis of WOX2 homeodomain transcription factor in Aegilops tauschii. Genet Mol Biol (2014) 0.75
Two-Step Functional Innovation of the Stem-Cell Factors WUS/WOX5 during Plant Evolution. Mol Biol Evol (2017) 0.75
The changes in the reproductive barrier between hexaploid wheat (Triticum aestivum L.) and rye (Secale cereale L.): different states lead to different fates. Planta (2017) 0.75
Molecular aspects of zygotic embryogenesis in sunflower (Helianthus annuus L.): correlation of positive histone marks with HaWUS expression and putative link HaWUS/HaL1L. Planta (2015) 0.75
Genome-wide analysis of transcription factors during somatic embryogenesis in banana (Musa spp.) cv. Grand Naine. PLoS One (2017) 0.75
Identification and expression analyses of new potential regulators of xylem development and cambium activity in cassava (Manihot esculenta). Planta (2016) 0.75
Divergent regeneration-competent cells adopt a common mechanism for callus initiation in angiosperms. Regeneration (Oxf) (2017) 0.75
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The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics (2005) 34.83
MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res (2005) 31.64
The Pfam protein families database. Nucleic Acids Res (2007) 30.53
QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics (2002) 9.36
Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell (1998) 8.33
The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell (2000) 7.89
MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res (2006) 7.57
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Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development (2004) 3.93
WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature (2005) 3.89
Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature (2007) 3.84
A molecular link between stem cell regulation and floral patterning in Arabidopsis. Cell (2001) 3.55
Termination of stem cell maintenance in Arabidopsis floral meristems by interactions between WUSCHEL and AGAMOUS. Cell (2001) 3.17
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A signaling module controlling the stem cell niche in Arabidopsis root meristems. Curr Biol (2009) 2.90
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc Natl Acad Sci U S A (2009) 2.39
TOPLESS regulates apical embryonic fate in Arabidopsis. Science (2006) 2.34
The true story of the HD-Zip family. Trends Plant Sci (2007) 2.00
Mechanical induction of lateral root initiation in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 1.98
Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev Cell (2008) 1.91
Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning. Plant Cell (2009) 1.89
The structure of the homeodomain and its functional implications. Trends Genet (1990) 1.82
Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance. Curr Biol (2005) 1.80
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins. Plant Physiol (2007) 1.74
The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice. Plant Cell (2009) 1.74
WUSCHEL signaling functions in interregional communication during Arabidopsis ovule development. Genes Dev (2002) 1.71
The making of a compound inflorescence in tomato and related nightshades. PLoS Biol (2008) 1.68
An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proc Natl Acad Sci U S A (2004) 1.60
Analysis of the transcription factor WUSCHEL and its functional homologue in Antirrhinum reveals a potential mechanism for their roles in meristem maintenance. Plant Cell (2006) 1.58
Differential recruitment of WOX transcription factors for lateral development and organ fusion in Petunia and Arabidopsis. Plant Cell (2009) 1.52
Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution. J Mol Evol (2007) 1.44
Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem. Plant J (2003) 1.42
A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development. Plant Physiol (2007) 1.38
Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Dev Biol (2007) 1.29
Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus. Plant Physiol (2007) 1.27
The evolution of nuclear auxin signalling. BMC Evol Biol (2009) 1.27
The PRETTY FEW SEEDS2 gene encodes an Arabidopsis homeodomain protein that regulates ovule development. Development (2005) 1.22
Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol (2008) 1.20
Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens. Curr Biol (2009) 1.19
Discrete shoot and root stem cell-promoting WUS/WOX5 functions are an evolutionary innovation of angiosperms. Mol Biol Evol (2009) 1.17
Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution. Development (2009) 1.13
The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution. Mol Biol Evol (2006) 1.12
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets. Nucleic Acids Res (2004) 1.12
Role of EVERGREEN in the development of the cymose petunia inflorescence. Dev Cell (2008) 1.11
Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis. BMC Evol Biol (2008) 1.09
Exploring the homeobox. Gene (1993) 1.05
Computational prediction of subcellular localization. Methods Mol Biol (2007) 1.01
WUSCHEL regulates cell differentiation during anther development. Dev Biol (2006) 1.00
Conifer WOX-related homeodomain transcription factors, developmental consideration and expression dynamic of WOX2 during Picea abies somatic embryogenesis. Plant Mol Biol (2008) 0.96
Structural basis for induced fit mechanisms in DNA recognition by the Pdx1 homeodomain. Biochemistry (2007) 0.93
WOX2 and polar auxin transport during spruce embryo pattern formation. Plant Signal Behav (2009) 0.79
Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development (2004) 3.93
Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature (2007) 3.84
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science (2010) 3.70
The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature (2010) 3.60
PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res (2009) 3.12
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (2011) 3.10
Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science (2012) 2.93
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science (2013) 2.51
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature (2012) 2.15
Stem cell homeostasis in the Arabidopsis shoot meristem is regulated by intercellular movement of CLAVATA3 and its sequestration by CLAVATA1. Development (2003) 2.01
Mechanical induction of lateral root initiation in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 1.98
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc Natl Acad Sci U S A (2013) 1.94
Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev Cell (2008) 1.91
The E3 ubiquitin ligase BIG BROTHER controls arabidopsis organ size in a dosage-dependent manner. Curr Biol (2006) 1.77
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins. Plant Physiol (2007) 1.74
WUSCHEL signaling functions in interregional communication during Arabidopsis ovule development. Genes Dev (2002) 1.71
The WUSCHEL and SHOOTMERISTEMLESS genes fulfil complementary roles in Arabidopsis shoot meristem regulation. Development (2002) 1.67
A protodermal miR394 signal defines a region of stem cell competence in the Arabidopsis shoot meristem. Dev Cell (2013) 1.67
Apical meristems: the plant's fountain of youth. Bioessays (2003) 1.58
Analysis of the transcription factor WUSCHEL and its functional homologue in Antirrhinum reveals a potential mechanism for their roles in meristem maintenance. Plant Cell (2006) 1.58
Exploring plant biodiversity: the Physcomitrella genome and beyond. Trends Plant Sci (2008) 1.56
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol (2010) 1.53
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing. PLoS Genet (2009) 1.42
Plant stem cell niches. Annu Rev Plant Biol (2012) 1.40
Dating the early evolution of plants: detection and molecular clock analyses of orthologs. Mol Genet Genomics (2007) 1.39
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genomics (2013) 1.38
Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Dev Cell (2011) 1.38
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc Natl Acad Sci U S A (2013) 1.36
APETALA2 regulates the stem cell niche in the Arabidopsis shoot meristem. Plant Cell (2005) 1.35
Roles of the middle domain-specific WUSCHEL-RELATED HOMEOBOX genes in early development of leaves in Arabidopsis. Plant Cell (2012) 1.30
Peptide signaling in plant development. Curr Biol (2011) 1.30
The evolution of nuclear auxin signalling. BMC Evol Biol (2009) 1.27
Pattern formation during early ovule development in Arabidopsis thaliana. Dev Biol (2004) 1.26
Vascular signalling mediated by ZWILLE potentiates WUSCHEL function during shoot meristem stem cell development in the Arabidopsis embryo. Development (2008) 1.24
Stem cell regulation in the shoot meristem. J Cell Sci (2003) 1.23
Complex chloroplast RNA metabolism: just debugging the genetic programme? BMC Biol (2008) 1.21
Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem. Plant Cell (2005) 1.21
Connecting the paths in plant stem cell regulation. Trends Cell Biol (2007) 1.17
Dual targeting of plastid division protein FtsZ to chloroplasts and the cytoplasm. EMBO Rep (2004) 1.15
Helical growth of the Arabidopsis mutant tortifolia1 reveals a plant-specific microtubule-associated protein. Curr Biol (2004) 1.15
The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration. Nucleic Acids Res (2006) 1.14
Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol (2006) 1.14
Origin and evolution of PIN auxin transporters in the green lineage. Trends Plant Sci (2012) 1.13
Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution. Development (2009) 1.13
The molecular and physiological responses of Physcomitrella patens to ultraviolet-B radiation. Plant Physiol (2010) 1.11
Prediction of dual protein targeting to plant organelles. New Phytol (2009) 1.10
RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal. Mol Genet Genomics (2009) 1.09
Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling. Plant Mol Biol (2009) 1.09
MGOUN1 encodes an Arabidopsis type IB DNA topoisomerase required in stem cell regulation and to maintain developmentally regulated gene silencing. Plant Cell (2010) 1.05
Apical-basal polarity: why plant cells don't stand on their heads. Trends Plant Sci (2005) 1.04
Somatic embryogenesis from Arabidopsis shoot apical meristem mutants. Planta (2001) 1.01
WUSCHEL regulates cell differentiation during anther development. Dev Biol (2006) 1.00
The speciation history of the Physcomitrium--Physcomitrella species complex. Evolution (2009) 0.95
Draft genome sequence of Leucobacter chromiiresistens, an extremely chromium-tolerant strain. J Bacteriol (2012) 0.95
ZWILLE buffers meristem stability in Arabidopsis thaliana. Dev Genes Evol (2003) 0.94
The origin of the plant body axis. Curr Opin Plant Biol (2012) 0.93
High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library. BMC Plant Biol (2002) 0.91
Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica. Plant J (2011) 0.91
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Arabidopsis WIH1 and WIH2 genes act in the transition from somatic to reproductive cell fate. Curr Biol (2011) 0.90
A sequence-anchored genetic linkage map for the moss, Physcomitrella patens. Plant J (2008) 0.89
Signaling pathways maintaining stem cells at the plant shoot apex. Semin Cell Dev Biol (2009) 0.88
The asymmetric division of the Arabidopsis zygote: from cell polarity to an embryo axis. Sex Plant Reprod (2011) 0.86
Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J (2014) 0.85
Polycomb group proteins function in the female gametophyte to determine seed development in plants. Development (2007) 0.85
WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens. Development (2014) 0.84
De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome. Mol Ecol Resour (2014) 0.83
POPCORN functions in the auxin pathway to regulate embryonic body plan and meristem organization in Arabidopsis. Plant Cell (2011) 0.82
Prediction and validation of promoters involved in the abscisic acid response in Physcomitrella patens. Mol Plant (2011) 0.82
Target specificity among canonical nuclear poly(A) polymerases in plants modulates organ growth and pathogen response. Proc Natl Acad Sci U S A (2013) 0.81
Reduced expression of the SHORT-ROOT gene increases the rates of growth and development in hybrid poplar and Arabidopsis. PLoS One (2011) 0.81
Large impact of the apoplast on somatic embryogenesis in Cyclamen persicum offers possibilities for improved developmental control in vitro. BMC Plant Biol (2010) 0.81
The chromatin landscape of the moss Physcomitrella patens and its dynamics during development and drought stress. Plant J (2014) 0.81
Generation-biased gene expression in a bryophyte model system. Mol Biol Evol (2010) 0.81
Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens. BMC Plant Biol (2010) 0.80
Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. BMC Plant Biol (2014) 0.80
Polyphenol oxidases in Physcomitrella: functional PPO1 knockout modulates cytokinin-dependent development in the moss Physcomitrella patens. J Exp Bot (2012) 0.79
Embryonic development in Arabidopsis thaliana: from the zygote division to the shoot meristem. Front Plant Sci (2011) 0.78
The evolution of eukaryotic cells from the perspective of peroxisomes: phylogenetic analyses of peroxisomal beta-oxidation enzymes support mitochondria-first models of eukaryotic cell evolution. Bioessays (2014) 0.78
Functional study of mammalian Neph proteins in Drosophila melanogaster. PLoS One (2012) 0.78
Green targeting predictor and ambiguous targeting predictor 2: the pitfalls of plant protein targeting prediction and of transient protein expression in heterologous systems. New Phytol (2013) 0.77
Identification and characterization of two wheat Glycogen Synthase Kinase 3/ SHAGGY-like kinases. BMC Plant Biol (2013) 0.76
Accession-specific modifiers act with ZWILLE/ARGONAUTE10 to maintain shoot meristem stem cells during embryogenesis in Arabidopsis. BMC Genomics (2013) 0.76
Network theory inspired analysis of time-resolved expression data reveals key players guiding P. patens stem cell development. PLoS One (2013) 0.75
Plant development--a snapshot in 2012. Curr Opin Plant Biol (2012) 0.75
Stem cells serve as a source of new cells. Semin Cell Dev Biol (2009) 0.75