Published in BMC Bioinformatics on February 07, 2007
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WRKY8 transcription factor functions in the TMV-cg defense response by mediating both abscisic acid and ethylene signaling in Arabidopsis. Proc Natl Acad Sci U S A (2013) 1.04
Soybean Trihelix transcription factors GmGT-2A and GmGT-2B improve plant tolerance to abiotic stresses in transgenic Arabidopsis. PLoS One (2009) 1.04
Comprehensive analysis of CCCH zinc finger family in poplar (Populus trichocarpa). BMC Genomics (2012) 1.03
Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation. Funct Integr Genomics (2009) 1.03
Comparative Transcriptome Analysis of Isoetes Sinensis Under Terrestrial and Submerged Conditions. Plant Mol Biol Report (2015) 0.98
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Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. Mol Genet Genomics (2009) 0.97
Evolutionary convergence of cell-specific gene expression in independent lineages of C4 grasses. Plant Physiol (2014) 0.95
The potential of transcription factor-based genetic engineering in improving crop tolerance to drought. OMICS (2014) 0.93
A cross-species transcriptomics approach to identify genes involved in leaf development. BMC Genomics (2008) 0.93
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The heat shock factor family from Triticum aestivum in response to heat and other major abiotic stresses and their role in regulation of heat shock protein genes. J Exp Bot (2013) 0.92
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Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis. Plant J (2013) 0.90
Genome-wide transcriptional profiles during temperature and oxidative stress reveal coordinated expression patterns and overlapping regulons in rice. PLoS One (2012) 0.88
Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique. Plant Signal Behav (2010) 0.88
Optimization of de novo short read assembly of seabuckthorn (Hippophae rhamnoides L.) transcriptome. PLoS One (2013) 0.87
Exploring the evolutionary differences of SBP-box genes targeted by miR156 and miR529 in plants. Genetica (2012) 0.87
Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha. BMC Genomics (2013) 0.86
Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice. Funct Integr Genomics (2012) 0.85
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat Commun (2016) 0.84
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Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses. Nucleic Acids Res (2015) 0.84
Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes. BMC Genomics (2013) 0.83
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Genome-Wide Analysis of C2H2 Zinc-Finger Family Transcription Factors and Their Responses to Abiotic Stresses in Poplar (Populus trichocarpa). PLoS One (2015) 0.83
Early transcriptional response of soybean contrasting accessions to root dehydration. PLoS One (2013) 0.82
Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress. Front Plant Sci (2013) 0.82
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat. BMC Genomics (2015) 0.81
Global transcriptome analysis of AtPAP2--overexpressing Arabidopsis thaliana with elevated ATP. BMC Genomics (2013) 0.80
Genome-wide identification and evolutionary analysis of the SBP-box gene family in castor bean. PLoS One (2014) 0.80
Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy. OMICS (2013) 0.80
Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation. PLoS One (2013) 0.79
Evolution of herbivore-induced early defense signaling was shaped by genome-wide duplications in Nicotiana. Elife (2016) 0.79
Functions of OsDof25 in regulation of OsC4PPDK. Plant Mol Biol (2015) 0.78
Grafting triggers differential responses between scion and rootstock. PLoS One (2015) 0.78
Raising salinity tolerant rice: recent progress and future perspectives. Physiol Mol Biol Plants (2008) 0.78
Identification of Transcription Factor-DNA Interactions In Vivo. Subcell Biochem (2011) 0.78
Transcriptome Analysis Reveals Candidate Genes involved in Blister Blight defense in Tea (Camellia sinensis (L) Kuntze). Sci Rep (2016) 0.78
Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver. Planta (2012) 0.78
Transcription factors in microalgae: genome-wide prediction and comparative analysis. BMC Genomics (2016) 0.77
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining. Rice (N Y) (2015) 0.77
Comparative Analysis of the Brassica napus Root and Leaf Transcript Profiling in Response to Drought Stress. Int J Mol Sci (2015) 0.77
The Maize TFome--development of a transcription factor open reading frame collection for functional genomics. Plant J (2014) 0.77
Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites. Plant Methods (2013) 0.76
Isolation and characterization of six AP2/ERF transcription factor genes in Chrysanthemum nankingense. Int J Mol Sci (2015) 0.76
Genome-Wide Identification and Function Analyses of Heat Shock Transcription Factors in Potato. Front Plant Sci (2016) 0.76
Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa. Sci Rep (2016) 0.76
Identification of transcription factor genes and their correlation with the high diversity of stramenopiles. PLoS One (2014) 0.76
Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles. Data Brief (2016) 0.76
BnSIP1-1, a Trihelix Family Gene, Mediates Abiotic Stress Tolerance and ABA Signaling in Brassica napus. Front Plant Sci (2017) 0.75
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
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Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. BMC Biol (2005) 4.18
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res (2003) 4.01
The institute for genomic research Osa1 rice genome annotation database. Plant Physiol (2005) 3.96
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell (2003) 3.80
AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics (2003) 3.61
WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol (2004) 3.60
Benchmarking ortholog identification methods using functional genomics data. Genome Biol (2006) 3.54
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res (2006) 3.47
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The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol (2006) 3.11
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The role of GRAS proteins in plant signal transduction and development. Planta (2004) 2.41
Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiol (2004) 2.41
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Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell (2003) 2.15
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Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis. Plant Mol Biol (2006) 1.68
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The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol (2004) 1.58
An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol (2005) 1.53
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Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. BMC Evol Biol (2003) 1.47
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Automatic transcription factor classifier based on functional domain composition. Biochem Biophys Res Commun (2006) 0.86
Gene regulation in planta by plant-derived engineered zinc finger protein transcription factors. Plant Mol Biol (2005) 0.84
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
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The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (2011) 3.10
AtDGK2, a novel diacylglycerol kinase from Arabidopsis thaliana, phosphorylates 1-stearoyl-2-arachidonoyl-sn-glycerol and 1,2-dioleoyl-sn-glycerol and exhibits cold-inducible gene expression. J Biol Chem (2003) 2.13
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A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant J (2010) 1.89
The Arabidopsis outward K+ channel GORK is involved in regulation of stomatal movements and plant transpiration. Proc Natl Acad Sci U S A (2003) 1.82
NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds. Nature (2012) 1.77
JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell (2012) 1.75
A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytol (2011) 1.69
DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant J (2006) 1.56
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ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana. Mol Plant (2011) 1.50
CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses. Proc Natl Acad Sci U S A (2012) 1.44
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Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res (2009) 1.36
Members of the Arabidopsis AtTPK/KCO family form homomeric vacuolar channels in planta. Plant J (2006) 1.33
Generation of superoxide anion in chloroplasts of Arabidopsis thaliana during active photosynthesis: a focus on rapidly induced genes. Plant Mol Biol (2007) 1.32
Vacuolar membrane localization of the Arabidopsis 'two-pore' K+ channel KCO1. Plant J (2002) 1.31
Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics (2007) 1.29
The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use. Plant J (2003) 1.24
Calcium-dependent modulation and plasma membrane targeting of the AKT2 potassium channel by the CBL4/CIPK6 calcium sensor/protein kinase complex. Cell Res (2011) 1.19
Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis. Cell Mol Life Sci (2012) 1.17
Heteromeric AtKC1{middle dot}AKT1 channels in Arabidopsis roots facilitate growth under K+-limiting conditions. J Biol Chem (2009) 1.16
Plant adaptation to fluctuating environment and biomass production are strongly dependent on guard cell potassium channels. Proc Natl Acad Sci U S A (2008) 1.15
NAC transcription factor speedy hyponastic growth regulates flooding-induced leaf movement in Arabidopsis. Plant Cell (2013) 1.14
Green transcription factors: a chlamydomonas overview. Genetics (2008) 1.13
Phospholipase C is required for the control of stomatal aperture by ABA. Plant J (2003) 1.13
Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis. Plant Physiol (2013) 1.12
GabiPD: the GABI primary database--a plant integrative 'omics' database. Nucleic Acids Res (2008) 1.12
Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice. Plant Cell (2013) 1.12
The ATP binding cassette transporter AtMRP5 modulates anion and calcium channel activities in Arabidopsis guard cells. J Biol Chem (2006) 1.11
External K+ modulates the activity of the Arabidopsis potassium channel SKOR via an unusual mechanism. Plant J (2006) 1.10
Translatome and metabolome effects triggered by gibberellins during rosette growth in Arabidopsis. J Exp Bot (2012) 1.08
The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. Plant J (2008) 1.08
Diurnal and circadian regulation of putative potassium channels in a leaf moving organ. Plant Physiol (2002) 1.05
Inward rectification of the AKT2 channel abolished by voltage-dependent phosphorylation. Plant J (2005) 1.03
Increased functional diversity of plant K+ channels by preferential heteromerization of the shaker-like subunits AKT2 and KAT2. J Biol Chem (2006) 1.02
Arabidopsis inositol polyphosphate 6-/3-kinase is a nuclear protein that complements a yeast mutant lacking a functional ArgR-Mcm1 transcription complex. Plant Cell (2003) 1.01
Assembly of plant Shaker-like K(out) channels requires two distinct sites of the channel alpha-subunit. Biophys J (2004) 0.99
Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants. Front Plant Sci (2012) 0.99
ROS homeostasis during development: an evolutionary conserved strategy. Cell Mol Life Sci (2012) 0.97
Arabidopsis NAC transcription factor JUNGBRUNNEN1 affects thermomemory-associated genes and enhances heat stress tolerance in primed and unprimed conditions. Plant Signal Behav (2012) 0.97
Auxin flow in anther filaments is critical for pollen grain development through regulating pollen mitosis. Plant Mol Biol (2006) 0.96
Transcription factor AtDOF4;2 affects phenylpropanoid metabolism in Arabidopsis thaliana. New Phytol (2007) 0.96
A unique voltage sensor sensitizes the potassium channel AKT2 to phosphoregulation. J Gen Physiol (2005) 0.96
ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription. EMBO Rep (2013) 0.95
Global analysis of the root hair morphogenesis transcriptome reveals new candidate genes involved in root hair formation in barley. J Plant Physiol (2010) 0.94
Potassium (K+) gradients serve as a mobile energy source in plant vascular tissues. Proc Natl Acad Sci U S A (2010) 0.94
Assembly and sorting of the tonoplast potassium channel AtTPK1 and its turnover by internalization into the vacuole. Plant Physiol (2011) 0.93
Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS One (2013) 0.93
Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1;1. FEBS Lett (2006) 0.92
An upstream regulator of the 26S proteasome modulates organ size in Arabidopsis thaliana. Plant J (2013) 0.92
At5PTase13 modulates cotyledon vein development through regulating auxin homeostasis. Plant Physiol (2005) 0.92
Expression of human c-reactive protein in different systems and its purification from Leishmania tarentolae. Protein Expr Purif (2011) 0.92
A minimal cysteine motif required to activate the SKOR K+ channel of Arabidopsis by the reactive oxygen species H2O2. J Biol Chem (2010) 0.92
Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes. Plant J (2005) 0.91
The role of K(+) channels in uptake and redistribution of potassium in the model plant Arabidopsis thaliana. Front Plant Sci (2013) 0.91
Salt-triggered expression of the ANAC092-dependent senescence regulon in Arabidopsis thaliana. Plant Signal Behav (2010) 0.91
Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis. New Phytol (2011) 0.91
Enhancement of stress tolerance in transgenic tobacco plants constitutively expressing AtIpk2beta, an inositol polyphosphate 6-/3-kinase from Arabidopsis thaliana. Plant Mol Biol (2007) 0.91
Positional information resolves structural variations and uncovers an evolutionarily divergent genetic locus in accessions of Arabidopsis thaliana. Genome Biol Evol (2011) 0.91
NAC transcription factor ORE1 and senescence-induced BIFUNCTIONAL NUCLEASE1 (BFN1) constitute a regulatory cascade in Arabidopsis. Mol Plant (2013) 0.90
Heteromeric K+ channels in plants. Plant J (2008) 0.90
Regulation of photosynthesis and transcription factor expression by leaf shading and re-illumination in Arabidopsis thaliana leaves. J Plant Physiol (2011) 0.89
A role of Arabidopsis inositol polyphosphate kinase, AtIPK2alpha, in pollen germination and root growth. Plant Physiol (2004) 0.89
Action of gibberellins on growth and metabolism of Arabidopsis plants associated with high concentration of carbon dioxide. Plant Physiol (2012) 0.88
Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. AoB Plants (2012) 0.88
Overexpression of AtWRKY30 enhances abiotic stress tolerance during early growth stages in Arabidopsis thaliana. Plant Mol Biol (2013) 0.87
Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts. Front Plant Sci (2012) 0.87
Distinct roles of the last transmembrane domain in controlling Arabidopsis K+ channel activity. New Phytol (2009) 0.87
Overproduction of chl B retards senescence through transcriptional reprogramming in Arabidopsis. Plant Cell Physiol (2012) 0.86
Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. J Exp Bot (2008) 0.85
Preferential KAT1-KAT2 heteromerization determines inward K+ current properties in Arabidopsis guard cells. J Biol Chem (2009) 0.85
Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation. Nucleic Acids Res (2010) 0.85
High-throughput protein expression using a combination of ligation-independent cloning (LIC) and infrared fluorescent protein (IFP) detection. PLoS One (2011) 0.84
Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes. Plant Physiol Biochem (2012) 0.84
Plant K(in) and K(out) channels: approaching the trait of opposite rectification by analyzing more than 250 KAT1-SKOR chimeras. Biochem Biophys Res Commun (2005) 0.83
MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways. Plant J (2013) 0.83
The nuclear proteome of the green alga Chlamydomonas reinhardtii. Proteomics (2011) 0.83
A highly efficient pipeline for protein expression in Leishmania tarentolae using infrared fluorescence protein as marker. Microb Cell Fact (2010) 0.83
Functional, structural and phylogenetic analysis of domains underlying the Al sensitivity of the aluminum-activated malate/anion transporter, TaALMT1. Plant J (2013) 0.83
Modulation of the Arabidopsis KAT1 channel by an activator of protein kinase C in Xenopus laevis oocytes. FEBS J (2010) 0.82
The role of the C-terminus for functional heteromerization of the plant channel KDC1. Biophys J (2009) 0.82
EBE, an AP2/ERF transcription factor highly expressed in proliferating cells, affects shoot architecture in Arabidopsis. Plant Physiol (2013) 0.81
The highly charged region of plant beta-type phosphatidylinositol 4-kinase is involved in membrane targeting and phospholipid binding. Plant Mol Biol (2006) 0.81
A novel bipartite nuclear localization signal with an atypically long linker in DOF transcription factors. J Plant Physiol (2010) 0.81
PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana. Mol Biosyst (2012) 0.80
Distributed structures underlie gating differences between the kin channel KAT1 and the Kout channel SKOR. Mol Plant (2009) 0.80