| Rank |
Title |
Journal |
Year |
PubWeight™‹?› |
|
1
|
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
|
PLoS One
|
2008
|
3.41
|
|
2
|
Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction.
|
Plant Cell
|
2002
|
2.48
|
|
3
|
Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
|
Plant Physiol
|
2006
|
2.45
|
|
4
|
PPDB, the Plant Proteomics Database at Cornell.
|
Nucleic Acids Res
|
2008
|
2.29
|
|
5
|
Consequences of membrane protein overexpression in Escherichia coli.
|
Mol Cell Proteomics
|
2007
|
2.11
|
|
6
|
Tuning Escherichia coli for membrane protein overexpression.
|
Proc Natl Acad Sci U S A
|
2008
|
2.11
|
|
7
|
The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.
|
Mol Cell Proteomics
|
2005
|
2.01
|
|
8
|
Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts.
|
Curr Opin Plant Biol
|
2006
|
1.75
|
|
9
|
Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics.
|
Plant Cell
|
2005
|
1.73
|
|
10
|
Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.
|
Mol Cell Proteomics
|
2008
|
1.70
|
|
11
|
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.
|
Plant Physiol
|
2010
|
1.59
|
|
12
|
Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.
|
J Biol Chem
|
2003
|
1.59
|
|
13
|
Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.
|
Plant Cell
|
2010
|
1.58
|
|
14
|
Reconstruction of metabolic pathways, protein expression, and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly.
|
Plant Physiol
|
2010
|
1.51
|
|
15
|
Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.
|
Mol Cell Proteomics
|
2010
|
1.50
|
|
16
|
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.
|
J Biol Chem
|
2004
|
1.49
|
|
17
|
Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.
|
Plant Physiol
|
2011
|
1.49
|
|
18
|
Plastoglobules: versatile lipoprotein particles in plastids.
|
Trends Plant Sci
|
2007
|
1.44
|
|
19
|
A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis.
|
Nucleic Acids Res
|
2008
|
1.41
|
|
20
|
Expression of tetanus toxin Fragment C in tobacco chloroplasts.
|
Nucleic Acids Res
|
2003
|
1.40
|
|
21
|
A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts.
|
Plant Cell
|
2007
|
1.34
|
|
22
|
Retracted
The pathogen-inducible nitric oxide synthase (iNOS) in plants is a variant of the P protein of the glycine decarboxylase complex.
|
Cell
|
2003
|
1.33
|
|
23
|
RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing.
|
Proc Natl Acad Sci U S A
|
2012
|
1.32
|
|
24
|
Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis.
|
Mol Cell Proteomics
|
2011
|
1.29
|
|
25
|
Stepwise deamidation of ribonuclease A at five sites determined by top down mass spectrometry.
|
Biochemistry
|
2006
|
1.28
|
|
26
|
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.
|
Mol Cell Proteomics
|
2009
|
1.27
|
|
27
|
Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.
|
Plant Cell
|
2009
|
1.24
|
|
28
|
A new approach for plant proteomics: characterization of chloroplast proteins of Arabidopsis thaliana by top-down mass spectrometry.
|
Mol Cell Proteomics
|
2003
|
1.24
|
|
29
|
The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
|
Plant Physiol
|
2012
|
1.23
|
|
30
|
A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing.
|
Proc Natl Acad Sci U S A
|
2009
|
1.19
|
|
31
|
Cell-type-specific differentiation of chloroplasts in C4 plants.
|
Trends Plant Sci
|
2009
|
1.14
|
|
32
|
Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.
|
Plant Cell
|
2006
|
1.12
|
|
33
|
The Clp protease system; a central component of the chloroplast protease network.
|
Biochim Biophys Acta
|
2010
|
1.11
|
|
34
|
Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties.
|
Plant Physiol
|
2004
|
1.09
|
|
35
|
A comprehensive analysis of the 14-3-3 interactome in barley leaves using a complementary proteomics and two-hybrid approach.
|
Plant Physiol
|
2006
|
1.09
|
|
36
|
ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.
|
Plant Cell
|
2013
|
1.09
|
|
37
|
Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.
|
Plant Physiol
|
2008
|
1.07
|
|
38
|
Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low.
|
Plant Mol Biol
|
2007
|
1.06
|
|
39
|
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
|
J Proteome Res
|
2012
|
1.03
|
|
40
|
Deregulation of maize C4 photosynthetic development in a mesophyll cell-defective mutant.
|
Plant Physiol
|
2008
|
1.00
|
|
41
|
APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain.
|
Plant Cell
|
2011
|
0.99
|
|
42
|
Correlation of mRNA and protein abundance in the developing maize leaf.
|
Plant J
|
2014
|
0.98
|
|
43
|
Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis.
|
Plant Physiol
|
2012
|
0.98
|
|
44
|
ABC1K atypical kinases in plants: filling the organellar kinase void.
|
Trends Plant Sci
|
2012
|
0.96
|
|
45
|
Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis.
|
Plant Cell
|
2011
|
0.95
|
|
46
|
Effects of SecE depletion on the inner and outer membrane proteomes of Escherichia coli.
|
J Bacteriol
|
2008
|
0.94
|
|
47
|
Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.
|
Plant Cell
|
2013
|
0.94
|
|
48
|
Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library.
|
Anal Chem
|
2009
|
0.92
|
|
49
|
Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO).
|
Proteomics
|
2011
|
0.91
|
|
50
|
The role of transitory starch in C(3), CAM, and C(4) metabolism and opportunities for engineering leaf starch accumulation.
|
J Exp Bot
|
2011
|
0.90
|
|
51
|
The workflow for quantitative proteome analysis of chloroplast development and differentiation, chloroplast mutants, and protein interactions by spectral counting.
|
Methods Mol Biol
|
2011
|
0.89
|
|
52
|
The Clp protease system is required for copper ion-dependent turnover of the PAA2/HMA8 copper transporter in chloroplasts.
|
New Phytol
|
2014
|
0.87
|
|
53
|
The combined use of photoaffinity labeling and surface plasmon resonance-based technology identifies multiple salicylic acid-binding proteins.
|
Plant J
|
2012
|
0.87
|
|
54
|
Characterization of the consequences of YidC depletion on the inner membrane proteome of E. coli using 2D blue native/SDS-PAGE.
|
J Mol Biol
|
2011
|
0.86
|
|
55
|
Immobilization of the first dimension in 2D blue native/SDS-PAGE allows the relative quantification of membrane proteomes.
|
Methods
|
2008
|
0.85
|
|
56
|
Constitutive expression of pea Lhcb 1-2 in tobacco affects plant development, morphology and photosynthetic capacity.
|
Plant Mol Biol
|
2004
|
0.84
|
|
57
|
The purification of the Chlamydomonas reinhardtii chloroplast ClpP complex: additional subunits and structural features.
|
Plant Mol Biol
|
2012
|
0.83
|
|
58
|
Consequences of depletion of the signal recognition particle in Escherichia coli.
|
J Biol Chem
|
2010
|
0.82
|
|
59
|
Salicylic Acid Inhibits the Replication of Tomato bushy stunt virus by Directly Targeting a Host Component in the Replication Complex.
|
Mol Plant Microbe Interact
|
2015
|
0.82
|
|
60
|
Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis.
|
Plant Physiol
|
2013
|
0.82
|
|
61
|
The pathogen-inducible nitric oxide synthase (iNOS) in plants is a variant of the P protein of the glycine decarboxylase complex.
|
Cell
|
2004
|
0.80
|
|
62
|
Correction: Structure, function, and substrates of Clp AAA+ protease systems in cyanobacteria, plastids, and apicoplasts: A comparative analysis.
|
J Biol Chem
|
2022
|
0.75
|