Published in PLoS One on January 21, 2010
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Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proc Natl Acad Sci U S A (2010) 1.89
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Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites. PLoS One (2013) 1.24
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Metagenomic insights into the fibrolytic microbiome in yak rumen. PLoS One (2012) 1.17
Extensive microbial and functional diversity within the chicken cecal microbiome. PLoS One (2014) 1.16
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. ISME J (2012) 1.15
Metatranscriptomics reveals the diversity of genes expressed by eukaryotes in forest soils. PLoS One (2012) 1.12
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J (2014) 1.12
Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus. Proc Natl Acad Sci U S A (2012) 1.11
Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. Microbiome (2015) 1.09
Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass. PLoS One (2013) 1.08
Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism. Appl Environ Microbiol (2013) 1.06
Snapshot of the eukaryotic gene expression in muskoxen rumen--a metatranscriptomic approach. PLoS One (2011) 1.05
The metagenome of an anaerobic microbial community decomposing poplar wood chips. PLoS One (2012) 1.05
Biocatalysts and small molecule products from metagenomic studies. Curr Opin Chem Biol (2012) 1.04
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Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms. PLoS One (2013) 0.99
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Complete genome sequence of Thermobispora bispora type strain (R51). Stand Genomic Sci (2010) 0.94
Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnol Biofuels (2013) 0.93
Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes. Genes (Basel) (2010) 0.92
From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis. J Biol Chem (2013) 0.91
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Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases. Biotechnol Biofuels (2011) 0.90
Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. Sci Rep (2015) 0.87
Metagenomic analysis of the microbiota from the crop of an invasive snail reveals a rich reservoir of novel genes. PLoS One (2012) 0.87
Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity. Biotechnol Biofuels (2012) 0.86
Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization. BMC Biotechnol (2012) 0.86
A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities. PLoS One (2013) 0.86
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Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis. PLoS One (2011) 0.85
Discovery of glycoside hydrolase enzymes in an avicel-adapted forest soil fungal community by a metatranscriptomic approach. PLoS One (2013) 0.85
Complete genome sequence of Thermomonospora curvata type strain (B9). Stand Genomic Sci (2011) 0.84
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Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities. Biotechnol Biofuels (2015) 0.83
Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community. Sci Rep (2014) 0.82
Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site. Microb Ecol (2013) 0.81
News in livestock research - use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals. Comput Struct Biotechnol J (2014) 0.80
Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage. ISME J (2015) 0.80
Meta-omic characterization of prokaryotic gene clusters for natural product biosynthesis. Curr Opin Biotechnol (2013) 0.79
A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Front Microbiol (2016) 0.79
Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion. PLoS One (2012) 0.78
Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes. PLoS One (2015) 0.78
Composted green waste as a substitute for peat in growth media: effects on growth and nutrition of Calathea insignis. PLoS One (2013) 0.77
Preservation of microbial communities enriched on lignocellulose under thermophilic and high-solid conditions. Biotechnol Biofuels (2015) 0.77
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics. Sci Rep (2016) 0.77
A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveils novel thermoalkaliphilic enzymes. BMC Genomics (2016) 0.76
Long-Term Enrichment on Cellulose or Xylan Causes Functional and Taxonomic Convergence of Microbial Communities from Anaerobic Digesters. Appl Environ Microbiol (2015) 0.76
Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose. Biotechnol Biofuels (2016) 0.76
Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park. Microb Ecol (2014) 0.76
Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting. Front Microbiol (2017) 0.75
Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses. Sci Rep (2017) 0.75
C/N ratio drives soil actinobacterial cellobiohydrolase gene diversity. Appl Environ Microbiol (2015) 0.75
Understanding the structure and function of bacterial expansins: a prerequisite towards practical applications for the bioenergy and agricultural industries. Microb Biotechnol (2016) 0.75
Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge. Biotechnol Biofuels (2017) 0.75
Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures. PLoS One (2016) 0.75
Cellulose-Enriched Microbial Communities from Leaf-Cutter Ant (Atta colombica) Refuse Dumps Vary in Taxonomic Composition and Degradation Ability. PLoS One (2016) 0.75
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Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res (2005) 29.61
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics (2008) 29.20
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res (2008) 27.83
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Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science (2007) 11.75
Energy. Beneficial biofuels--the food, energy, and environment trilemma. Science (2009) 9.27
Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol (1982) 9.08
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature (2007) 7.42
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol (2006) 4.09
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci U S A (2009) 4.03
Genomics of cellulosic biofuels. Nature (2008) 3.43
Unique aspects of the grass cell wall. Curr Opin Plant Biol (2008) 2.91
An assay for selective determination of exo-1,4,-beta-glucanases in a mixture of cellulolytic enzymes. Anal Biochem (1984) 2.45
Sustainable liquid biofuels from biomass: the writing's on the walls. New Phytol (2008) 2.22
New improvements for lignocellulosic ethanol. Curr Opin Biotechnol (2009) 1.72
Bioprospecting metagenomes: glycosyl hydrolases for converting biomass. Biotechnol Biofuels (2009) 1.52
A family of thermostable fungal cellulases created by structure-guided recombination. Proc Natl Acad Sci U S A (2009) 1.50
Next-generation biomass feedstocks for biofuel production. Genome Biol (2008) 1.47
FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet Biol (2008) 1.31
Molecular breeding of switchgrass for use as a biofuel crop. Curr Opin Genet Dev (2007) 1.30
Microbiological aspects of biowaste during composting in a monitored compost bin. J Appl Microbiol (2003) 1.27
Microbial community succession and lignocellulose degradation during agricultural waste composting. Biodegradation (2007) 1.13
Influence of Initial C/N Ratio on Chemical and Microbial Composition during Long Term Composting of Straw. Microb Ecol (2001) 1.13
Actinomycetes and lignin degradation. Adv Appl Microbiol (2006) 1.10
Protein engineering in designing tailored enzymes and microorganisms for biofuels production. Curr Opin Biotechnol (2009) 1.08
Effect of temperature on composting of sewage sludge. Appl Environ Microbiol (1985) 1.02
Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches. J Biosci Bioeng (2006) 0.99
Driving biofuels from field to fuel tank. Cell (2009) 0.88
Thorough chemical modification of wood-based lignocellulosic materials in ionic liquids. Biomacromolecules (2007) 0.82
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Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature (2004) 20.20
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics (2004) 18.87
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2009) 9.98
Accurate phylogenetic classification of variable-length DNA fragments. Nat Methods (2006) 9.93
CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol (2008) 8.91
Insights into the phylogeny and coding potential of microbial dark matter. Nature (2013) 8.55
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A (2007) 7.82
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods (2007) 7.73
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature (2007) 7.42
The integrated microbial genomes (IMG) system. Nucleic Acids Res (2006) 7.34
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res (2007) 7.18
A renaissance for the pioneering 16S rRNA gene. Curr Opin Microbiol (2008) 6.82
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res (2006) 6.79
Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (2010) 6.73
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol (2013) 6.40
CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics (2007) 5.84
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol (2006) 5.71
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol (2002) 5.56
Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol (2007) 5.40
The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc Natl Acad Sci U S A (2001) 5.39
A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev (2008) 4.33
The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. PLoS Biol (2005) 4.28
Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J (2010) 4.15
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol (2006) 4.09
Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol (2010) 4.01
The ERGO genome analysis and discovery system. Nucleic Acids Res (2003) 3.89
Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol (2004) 3.81
A single-base resolution map of an archaeal transcriptome. Genome Res (2009) 3.42
Complete genome sequence of Kytococcus sedentarius type strain (541). Stand Genomic Sci (2009) 3.30
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Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586. J Bacteriol (2002) 3.18
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High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol (2008) 2.99
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Oil biodegradation and bioremediation: a tale of the two worst spills in U.S. history. Environ Sci Technol (2011) 2.88
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc Natl Acad Sci U S A (2005) 2.85
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Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat Methods (2012) 2.77
An experimental metagenome data management and analysis system. Bioinformatics (2006) 2.71
Distinct lineage specification roles for NANOG, OCT4, and SOX2 in human embryonic stem cells. Cell Stem Cell (2012) 2.49
Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill. Appl Environ Microbiol (2011) 2.47
The challenge of enzyme cost in the production of lignocellulosic biofuels. Biotechnol Bioeng (2011) 2.47
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J (2012) 2.45
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Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification. Bioresour Technol (2009) 2.32
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Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data. PLoS Comput Biol (2013) 2.28
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GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J (2010) 2.21
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Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol (2003) 2.14
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Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol (2006) 1.68
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Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol (2012) 1.58
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Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass. Biotechnol Bioeng (2009) 1.57