Published in Nat Biotechnol on May 26, 2013
Insights into the phylogeny and coding potential of microbial dark matter. Nature (2013) 8.55
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res (2015) 6.39
Alterations of the human gut microbiome in liver cirrhosis. Nature (2014) 3.02
Unusual biology across a group comprising more than 15% of domain Bacteria. Nature (2015) 2.34
Binning metagenomic contigs by coverage and composition. Nat Methods (2014) 2.27
Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning. Nat Biotechnol (2015) 2.01
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun (2014) 1.88
Complete nitrification by Nitrospira bacteria. Nature (2015) 1.87
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities. PeerJ (2015) 1.75
Complete nitrification by a single microorganism. Nature (2015) 1.72
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio (2013) 1.70
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells. Nat Biotechnol (2013) 1.69
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. Microbiome (2014) 1.63
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses. Nature (2016) 1.57
An expanded genomic representation of the phylum cyanobacteria. Genome Biol Evol (2014) 1.56
First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking. PeerJ (2015) 1.51
Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires. Microbiome (2015) 1.46
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling. Nat Rev Microbiol (2015) 1.41
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data. Microbiome (2015) 1.33
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Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle. Proc Natl Acad Sci U S A (2014) 1.26
VirSorter: mining viral signal from microbial genomic data. PeerJ (2015) 1.21
Hidden diversity in honey bee gut symbionts detected by single-cell genomics. PLoS Genet (2014) 1.21
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. ISME J (2013) 1.19
Recent advances in genomic DNA sequencing of microbial species from single cells. Nat Rev Genet (2014) 1.17
Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters. ISME J (2014) 1.16
Analysis of plant microbe interactions in the era of next generation sequencing technologies. Front Plant Sci (2014) 1.15
The activated sludge ecosystem contains a core community of abundant organisms. ISME J (2015) 1.13
Using populations of human and microbial genomes for organism detection in metagenomes. Genome Res (2015) 1.12
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. Genome Res (2015) 1.12
Where next for microbiome research? PLoS Biol (2015) 1.11
Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps. G3 (Bethesda) (2014) 1.11
Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods. Bioinformatics (2014) 1.11
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protoc (2014) 1.10
Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies. PeerJ (2016) 1.09
Draft Genome Sequence of Uncultivated Firmicutes (Peptococcaceae SCADC) Single Cells Sorted from Methanogenic Alkane-Degrading Cultures. Genome Announc (2014) 1.08
Thermophilic archaea activate butane via alkyl-coenzyme M formation. Nature (2016) 1.08
Computational approaches to natural product discovery. Nat Chem Biol (2015) 1.05
Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont "Candidatus Synechococcus spongiarum". MBio (2014) 1.04
MiDAS: the field guide to the microbes of activated sludge. Database (Oxford) (2015) 1.04
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms. Elife (2014) 1.01
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Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes. ISME J (2015) 1.00
Reconstructing the genomic content of microbiome taxa through shotgun metagenomic deconvolution. PLoS Comput Biol (2013) 1.00
Lifestyle evolution in cyanobacterial symbionts of sponges. MBio (2015) 1.00
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME J (2016) 0.98
Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature (2017) 0.97
'Candidatus Competibacter'-lineage genomes retrieved from metagenomes reveal functional metabolic diversity. ISME J (2013) 0.96
Alignment-free visualization of metagenomic data by nonlinear dimension reduction. Sci Rep (2014) 0.96
Comparative analysis of functional metagenomic annotation and the mappability of short reads. PLoS One (2014) 0.96
Inter-species interconnections in acid mine drainage microbial communities. Front Microbiol (2014) 0.94
Reconstructing each cell's genome within complex microbial communities-dream or reality? Front Microbiol (2015) 0.94
Whole-genome sequencing in bacteriology: state of the art. Infect Drug Resist (2013) 0.94
Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant. ISME J (2014) 0.94
Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira. Proc Natl Acad Sci U S A (2015) 0.93
Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome. Nat Biotechnol (2015) 0.93
MetaRef: a pan-genomic database for comparative and community microbial genomics. Nucleic Acids Res (2013) 0.93
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome (2016) 0.93
Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. ISME J (2014) 0.92
Host-associated bacterial taxa from Chlorobi, Chloroflexi, GN02, Synergistetes, SR1, TM7, and WPS-2 Phyla/candidate divisions. J Oral Microbiol (2014) 0.92
A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode. Appl Environ Microbiol (2014) 0.92
Metagenomics uncovers gaps in amplicon-based detection of microbial diversity. Nat Microbiol (2016) 0.91
Recovering complete and draft population genomes from metagenome datasets. Microbiome (2016) 0.91
Limited dissemination of the wastewater treatment plant core resistome. Nat Commun (2015) 0.91
Genomes of "Spiribacter", a streamlined, successful halophilic bacterium. BMC Genomics (2013) 0.90
Metagenome-assembled genomes uncover a global brackish microbiome. Genome Biol (2015) 0.90
Application of metagenomics in the human gut microbiome. World J Gastroenterol (2015) 0.90
Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. Front Microbiol (2016) 0.88
Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. Front Microbiol (2015) 0.88
Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia. Appl Environ Microbiol (2015) 0.88
Draft Genome Sequence of Cylindrospermopsis sp. Strain CR12 Extracted from the Minimetagenome of a Nonaxenic Unialgal Culture from a Tropical Freshwater Lake. Genome Announc (2016) 0.88
Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8). PLoS One (2014) 0.88
Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial). Front Microbiol (2015) 0.88
A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum. ISME J (2014) 0.88
Genomic and phenotypic insights into the ecology of Arthrobacter from Antarctic soils. BMC Genomics (2015) 0.87
Draft Genome Sequence of Anammox Bacterium "Candidatus Scalindua brodae," Obtained Using Differential Coverage Binning of Sequencing Data from Two Reactor Enrichments. Genome Announc (2015) 0.87
Assembly of viral genomes from metagenomes. Front Microbiol (2014) 0.86
Complete Genome Sequence of Pseudomonas sp. UK4, a Model Organism for Studies of Functional Amyloids in Pseudomonas. Genome Announc (2014) 0.86
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center. ISME J (2015) 0.86
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Sci Rep (2016) 0.86
Isolation and characterization of two novel bacteria Afipia cberi and Mesorhizobium hominis from blood of a patient afflicted with fatal pulmonary illness. PLoS One (2013) 0.85
Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy. Biotechnol Biofuels (2016) 0.85
The first complete genome sequence of the class Fimbriimonadia in the phylum Armatimonadetes. PLoS One (2014) 0.85
Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond. Microbes Environ (2016) 0.85
Insights into the distribution and abundance of the ubiquitous candidatus Saccharibacteria phylum following tag pyrosequencing. Sci Rep (2014) 0.84
Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1. Stand Genomic Sci (2016) 0.84
The ecological controls on the prevalence of candidate division TM7 in polar regions. Front Microbiol (2014) 0.84
Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes. Philos Trans R Soc Lond B Biol Sci (2015) 0.84
Emerging methods to study bacteriophage infection at the single-cell level. Front Microbiol (2014) 0.84
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system. Nat Commun (2016) 0.84
Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities. Front Microbiol (2015) 0.84
Are multi-omics enough? Nat Microbiol (2016) 0.84
Modelling the efficiency of codon-tRNA interactions based on codon usage bias. DNA Res (2014) 0.83
Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. Brief Bioinform (2015) 0.83
Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach. Sci Rep (2015) 0.83
Detailed investigation of the microbial community in foaming activated sludge reveals novel foam formers. Sci Rep (2015) 0.83
Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations. Nucleic Acids Res (2015) 0.83
Metabolic network modeling of microbial communities. Wiley Interdiscip Rev Syst Biol Med (2015) 0.83
A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge. Sci Rep (2016) 0.83
The RAST Server: rapid annotations using subsystems technology. BMC Genomics (2008) 175.18
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res (2008) 151.16
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
The COG database: an updated version includes eukaryotes. BMC Bioinformatics (2003) 60.98
ARB: a software environment for sequence data. Nucleic Acids Res (2004) 58.27
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
The Pfam protein families database. Nucleic Acids Res (2011) 33.46
Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (2010) 26.76
FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One (2010) 26.15
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Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature (2004) 20.20
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A (2010) 19.48
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res (2010) 18.73
IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics (2009) 17.90
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res (2011) 10.82
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell (2011) 9.75
Exploring prokaryotic diversity in the genomic era. Genome Biol (2002) 9.42
Integrative analysis of environmental sequences using MEGAN4. Genome Res (2011) 8.60
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A (2007) 7.82
PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics (2012) 7.10
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (2011) 6.93
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics (2012) 6.40
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol (2006) 5.71
Extreme genome reduction in symbiotic bacteria. Nat Rev Microbiol (2011) 4.67
Whole genome amplification and de novo assembly of single bacterial cells. PLoS One (2009) 4.65
A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev (2008) 4.33
Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol (2008) 3.89
Anaerobic oxidation of methane: progress with an unknown process. Annu Rev Microbiol (2009) 3.82
Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Appl Environ Microbiol (2001) 3.77
Teichoic acids and related cell-wall glycopolymers in Gram-positive physiology and host interactions. Nat Rev Microbiol (2008) 3.57
Targeted access to the genomes of low-abundance organisms in complex microbial communities. Appl Environ Microbiol (2007) 3.55
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science (2012) 3.39
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. ISME J (2011) 2.97
Pili in Gram-positive bacteria: assembly, involvement in colonization and biofilm development. Trends Microbiol (2008) 2.83
Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease. Appl Environ Microbiol (2003) 2.72
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol (2011) 2.52
Genomic sequencing of uncultured microorganisms from single cells. Nat Rev Microbiol (2012) 2.45
Enigmatic, ultrasmall, uncultivated Archaea. Proc Natl Acad Sci U S A (2010) 2.12
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Individual genome assembly from complex community short-read metagenomic datasets. ISME J (2011) 1.71
Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons. PLoS One (2012) 1.71
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A major clade of prokaryotes with ancient adaptations to life on land. Mol Biol Evol (2008) 1.56
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A conceptual ecosystem model of microbial communities in enhanced biological phosphorus removal plants. Water Res (2010) 1.34
Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes. Antonie Van Leeuwenhoek (2011) 1.32
Microbial communities involved in enhanced biological phosphorus removal from wastewater--a model system in environmental biotechnology. Curr Opin Biotechnol (2011) 1.20
In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth. Environ Microbiol (2002) 1.08
Identification of a novel toluene-degrading bacterium from the candidate phylum TM7, as determined by DNA stable isotope probing. Appl Environ Microbiol (2009) 1.07
Comparative metagenomics of microbial communities. Science (2005) 25.88
Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature (2004) 20.20
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics (2004) 18.87
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol (2009) 14.17
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2009) 9.98
Accurate phylogenetic classification of variable-length DNA fragments. Nat Methods (2006) 9.93
CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol (2008) 8.91
Insights into the phylogeny and coding potential of microbial dark matter. Nature (2013) 8.55
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A (2007) 7.82
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods (2007) 7.73
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature (2007) 7.42
The integrated microbial genomes (IMG) system. Nucleic Acids Res (2006) 7.34
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res (2007) 7.18
A renaissance for the pioneering 16S rRNA gene. Curr Opin Microbiol (2008) 6.82
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res (2006) 6.79
Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci U S A (2008) 6.50
CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics (2007) 5.84
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol (2006) 5.71
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol (2002) 5.56
Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol (2007) 5.40
A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev (2008) 4.33
Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J (2010) 4.15
Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol (2010) 4.01
Community proteomics of a natural microbial biofilm. Science (2005) 3.97
Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol (2004) 3.81
Complete genome sequence of Kytococcus sedentarius type strain (541). Stand Genomic Sci (2009) 3.30
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Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol (2003) 2.77
Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat Methods (2012) 2.77
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature (2009) 2.72
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature (2007) 2.53
Microbiology: metagenomics. Nature (2008) 2.39
Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data. PLoS Comput Biol (2013) 2.28
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nat Methods (2010) 2.21
Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol (2003) 2.14
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol (2008) 2.12
Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Res (2012) 2.10
Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environ Microbiol (2009) 2.09
Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature (2013) 2.07
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS One (2010) 2.02
Complete genome sequence of Meiothermus ruber type strain (21). Stand Genomic Sci (2010) 1.96
A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res (2007) 1.85
Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One (2009) 1.83
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci (2009) 1.82
Multiple displacement amplification compromises quantitative analysis of metagenomes. Nat Methods (2010) 1.80
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J (2010) 1.72
Lineages of acidophilic archaea revealed by community genomic analysis. Science (2006) 1.70
Genome dynamics in a natural archaeal population. Proc Natl Acad Sci U S A (2007) 1.68
Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase. Proc Natl Acad Sci U S A (2006) 1.65
A call for standardized classification of metagenome projects. Environ Microbiol (2010) 1.58
Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments. Appl Environ Microbiol (2006) 1.56
An expanded genomic representation of the phylum cyanobacteria. Genome Biol Evol (2014) 1.56
Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Appl Environ Microbiol (2004) 1.55
Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology (2002) 1.55
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME J (2012) 1.51
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J (2008) 1.48
Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Funct Integr Genomics (2008) 1.44
Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One (2012) 1.44
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Appl Environ Microbiol (2005) 1.35
Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics (2007) 1.35
Molecular analysis of dimethyl sulphide dehydrogenase from Rhodovulum sulfidophilum: its place in the dimethyl sulphoxide reductase family of microbial molybdopterin-containing enzymes. Mol Microbiol (2002) 1.34
A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal. ISME J (2011) 1.34
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Stand Genomic Sci (2009) 1.34
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics (2007) 1.33
Complete genome sequence of Spirosoma linguale type strain (1). Stand Genomic Sci (2010) 1.32
Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays. Curr Opin Biotechnol (2005) 1.26
Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Appl Environ Microbiol (2011) 1.26
Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites. PLoS One (2013) 1.24
Annotation of metagenome short reads using proxygenes. Bioinformatics (2008) 1.24
Phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria inhabiting an oxic-anoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization. Appl Environ Microbiol (2002) 1.24
Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Appl Environ Microbiol (2004) 1.22
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol J (2011) 1.21
Future reef decalcification under a business-as-usual CO2 emission scenario. Proc Natl Acad Sci U S A (2013) 1.21
SNP-VISTA: an interactive SNP visualization tool. BMC Bioinformatics (2005) 1.21
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Stand Genomic Sci (2010) 1.21
Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging. MBio (2012) 1.20
Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Appl Environ Microbiol (2003) 1.19
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Stand Genomic Sci (2009) 1.17
Strainer: software for analysis of population variation in community genomic datasets. BMC Bioinformatics (2007) 1.16
The bacteriology of chronic venous leg ulcer examined by culture-independent molecular methods. Wound Repair Regen (2010) 1.16
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Stand Genomic Sci (2010) 1.15
Coral reef invertebrate microbiomes correlate with the presence of photosymbionts. ISME J (2013) 1.14
Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Stand Genomic Sci (2009) 1.14
Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J (2011) 1.12
Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci (2009) 1.12
Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Stand Genomic Sci (2010) 1.10
Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor Appl Genet (2011) 1.09