PubRank

Roland L Dunbrack

Author PubWeight™ 106.51‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 PISCES: a protein sequence culling server. Bioinformatics 2003 11.87
2 A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci 2003 9.25
3 Improved prediction of protein side-chain conformations with SCWRL4. Proteins 2009 5.67
4 Formation of MacroH2A-containing senescence-associated heterochromatin foci and senescence driven by ASF1a and HIRA. Dev Cell 2005 4.83
5 Cyclic coordinate descent: A robotics algorithm for protein loop closure. Protein Sci 2003 4.82
6 PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochim Biophys Acta 2010 3.62
7 PISCES: recent improvements to a PDB sequence culling server. Nucleic Acids Res 2005 3.55
8 A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions. Structure 2011 2.61
9 CAFASP3: the third critical assessment of fully automated structure prediction methods. Proteins 2003 2.60
10 Conformation dependence of backbone geometry in proteins. Structure 2009 2.33
11 Outcome of a workshop on archiving structural models of biological macromolecules. Structure 2006 2.32
12 Outcome of a workshop on applications of protein models in biomedical research. Structure 2009 2.05
13 Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation. Proc Natl Acad Sci U S A 2010 1.87
14 Aurora A kinase (AURKA) in normal and pathological cell division. Cell Mol Life Sci 2012 1.84
15 A new clustering of antibody CDR loop conformations. J Mol Biol 2010 1.83
16 Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB. Bioinformatics 2012 1.82
17 SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling. Nat Protoc 2008 1.79
18 Scoring profile-to-profile sequence alignments. Protein Sci 2004 1.71
19 Assessment of disorder predictions in CASP6. Proteins 2005 1.69
20 Promotion of tumor growth by murine fibroblast activation protein, a serine protease, in an animal model. Cancer Res 2002 1.66
21 Statistical analysis of interface similarity in crystals of homologous proteins. J Mol Biol 2008 1.55
22 Oligomerization of BAK by p53 utilizes conserved residues of the p53 DNA binding domain. J Biol Chem 2008 1.55
23 Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model. PLoS Comput Biol 2010 1.44
24 Assessment of fold recognition predictions in CASP6. Proteins 2005 1.41
25 MollDE: a homology modeling framework you can click with. Bioinformatics 2005 1.40
26 Statistical and conformational analysis of the electron density of protein side chains. Proteins 2007 1.35
27 The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms. Nucleic Acids Res 2010 1.30
28 Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites. Proc Natl Acad Sci U S A 2011 1.23
29 BioDownloader: bioinformatics downloads and updates in a few clicks. Bioinformatics 2007 1.14
30 A modified HSP70 inhibitor shows broad activity as an anticancer agent. Mol Cancer Res 2013 1.14
31 A new model for allosteric regulation of phenylalanine hydroxylase: implications for disease and therapeutics. Arch Biochem Biophys 2013 1.11
32 ProtBuD: a database of biological unit structures of protein families and superfamilies. Bioinformatics 2006 1.09
33 The role of balanced training and testing data sets for binary classifiers in bioinformatics. PLoS One 2013 1.09
34 Domain definition and target classification for CASP6. Proteins 2005 1.06
35 A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions. Acta Crystallogr D Biol Crystallogr 2008 1.05
36 Minimal ensembles of side chain conformers for modeling protein-protein interactions. Proteins 2011 1.03
37 Testing computational prediction of missense mutation phenotypes: functional characterization of 204 mutations of human cystathionine beta synthase. Proteins 2010 1.03
38 Assignment of protonation states in proteins and ligands: combining pKa prediction with hydrogen bonding network optimization. Methods Mol Biol 2012 1.02
39 CD45-deficient severe combined immunodeficiency caused by uniparental disomy. Proc Natl Acad Sci U S A 2012 0.99
40 Rapid calcium-dependent activation of Aurora-A kinase. Nat Commun 2010 0.98
41 Development of a rotamer library for use in beta-peptide foldamer computational design. J Am Chem Soc 2010 0.93
42 Prediction of phenotypes of missense mutations in human proteins from biological assemblies. Proteins 2012 0.92
43 Clinical trials that explicitly exclude gay and lesbian patients. N Engl J Med 2010 0.92
44 The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite. PLoS One 2013 0.91
45 An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases. Proteins 2009 0.88
46 Architecture and assembly of HIV integrase multimers in the absence of DNA substrates. J Biol Chem 2013 0.87
47 Identification and characterization of a paralog of human cell cycle checkpoint gene HUS1. Genomics 2002 0.86
48 Protein-intrinsic and signaling network-based sources of resistance to EGFR- and ErbB family-targeted therapies in head and neck cancer. Drug Resist Updat 2011 0.86
49 A structural basis for half-of-the-sites metal binding revealed in Drosophila melanogaster porphobilinogen synthase. J Biol Chem 2003 0.86
50 Charge asymmetry in the proteins of the outer membrane. Bioinformatics 2013 0.86
51 A highly selective dual insulin receptor (IR)/insulin-like growth factor 1 receptor (IGF-1R) inhibitor derived from an extracellular signal-regulated kinase (ERK) inhibitor. J Biol Chem 2013 0.82
52 Mapping the epitope of an inhibitory monoclonal antibody to the C-terminal DNA-binding domain of HIV-1 integrase. J Biol Chem 2002 0.82
53 CASA: a server for the critical assessment of protein sequence alignment accuracy. Bioinformatics 2002 0.80
54 Issues in interpreting the in vivo activity of Aurora-A. Expert Opin Ther Targets 2014 0.80
55 OVCA2 is downregulated and degraded during retinoid-induced apoptosis. Int J Cancer 2002 0.79
56 Conformational analysis of the DFG-out kinase motif and biochemical profiling of structurally validated type II inhibitors. J Med Chem 2014 0.78
57 Acetylation of the transcriptional repressor Ume6p allows efficient promoter release and timely induction of the meiotic transient transcription program in yeast. Mol Cell Biol 2013 0.77
58 The Rosetta all-atom energy function for macromolecular modeling and design. J Chem Theory Comput 2017 0.76
59 An Integrated Database for Complex Protein Structure Modeling. Proceedings (IEEE Int Conf Bioinformatics Biomed) 2008 0.75