Published in BMC Genomics on January 28, 2010
ABA-mediated transcriptional regulation in response to osmotic stress in plants. J Plant Res (2011) 2.98
Evaluation of genetically engineered crops using transcriptomic, proteomic, and metabolomic profiling techniques. Plant Physiol (2011) 1.74
Related to ABA-Insensitive3(ABI3)/Viviparous1 and AtABI5 transcription factor coexpression in cotton enhances drought stress adaptation. Plant Biotechnol J (2014) 0.91
Insect-protected event DAS-81419-2 soybean (Glycine max L.) grown in the United States and Brazil is compositionally equivalent to nontransgenic soybean. J Agric Food Chem (2015) 0.88
Transcriptome analysis reveals genes commonly induced by Botrytis cinerea infection, cold, drought and oxidative stresses in Arabidopsis. PLoS One (2014) 0.84
Assessing Utilization and Environmental Risks of Important Genes in Plant Abiotic Stress Tolerance. Front Plant Sci (2016) 0.83
DNA millichips as a low-cost platform for gene expression analysis. Plant Physiol (2012) 0.83
Hybridization between crops and wild relatives: the contribution of cultivated lettuce to the vigour of crop-wild hybrids under drought, salinity and nutrient deficiency conditions. Theor Appl Genet (2012) 0.83
Do transgenesis and marker-assisted backcross breeding produce substantially equivalent plants? A comparative study of transgenic and backcross rice carrying bacterial blight resistant gene Xa21. BMC Genomics (2013) 0.78
A distal ABA responsive element in AtNCED3 promoter is required for positive feedback regulation of ABA biosynthesis in Arabidopsis. PLoS One (2014) 0.78
Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis. Plant Cell (2016) 0.78
The ectopic expression of the wheat Puroindoline genes increase germ size and seed oil content in transgenic corn. Plant Mol Biol (2010) 0.77
Expression analysis of drought stress specific genes in Peanut (Arachis hypogaea , L.). Physiol Mol Biol Plants (2013) 0.77
Non-uniform distribution pattern for differentially expressed genes of transgenic rice Huahui 1 at different developmental stages and environments. PLoS One (2012) 0.76
Differentially expressed genes distributed over chromosomes and implicated in certain biological processes for site insertion genetically modified rice Kemingdao. Int J Biol Sci (2012) 0.75
Brachypodium distachyon BdPP2CA6 Interacts with BdPYLs and BdSnRK2 and Positively Regulates Salt Tolerance in Transgenic Arabidopsis. Front Plant Sci (2017) 0.75
Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci (2016) 0.75
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol (2004) 101.91
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol (2004) 19.29
Plant productivity and environment. Science (1982) 10.43
The WRKY superfamily of plant transcription factors. Trends Plant Sci (2000) 8.68
Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat Biotechnol (1999) 8.33
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J (2002) 7.70
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell (2003) 6.22
The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell (2000) 6.18
Gene networks involved in drought stress response and tolerance. J Exp Bot (2006) 6.03
bZIP transcription factors in Arabidopsis. Trends Plant Sci (2002) 5.69
Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Proc Natl Acad Sci U S A (2000) 5.23
Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell (1997) 5.12
Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell (2001) 5.11
ABFs, a family of ABA-responsive element binding factors. J Biol Chem (2000) 4.98
A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis. Proc Natl Acad Sci U S A (2001) 4.95
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell (2004) 4.53
Growth inhibition and DNA damage induced by Cre recombinase in mammalian cells. Proc Natl Acad Sci U S A (2001) 4.51
An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell (1993) 4.42
Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. Ann Bot (2008) 4.15
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci U S A (2006) 4.09
The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. Plant Cell (2004) 3.77
Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell (2007) 3.62
An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis. Cell (2001) 3.50
Self-excising retroviral vectors encoding the Cre recombinase overcome Cre-mediated cellular toxicity. Mol Cell (2001) 3.43
Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell (2002) 3.36
Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell (2006) 3.36
A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell (2000) 3.33
Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1. Proc Natl Acad Sci U S A (2006) 3.28
ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination. Plant J (2002) 3.28
Mammalian genomes contain active recombinase recognition sites. Gene (2000) 3.08
Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiol (2002) 3.00
AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell (2005) 2.97
Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array. Plant Cell Physiol (2008) 2.84
Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres. Proc Natl Acad Sci U S A (2007) 2.74
Illegitimate Cre-dependent chromosome rearrangements in transgenic mouse spermatids. Proc Natl Acad Sci U S A (2000) 2.71
Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis. Dev Cell (2001) 2.66
Isolation of a strong Arabidopsis guard cell promoter and its potential as a research tool. Plant Methods (2008) 2.48
Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J (2003) 2.45
Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis. Plant Cell (2007) 2.40
Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep (2006) 2.38
CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proc Natl Acad Sci U S A (2004) 2.26
Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J (2005) 2.26
Physical interactions between ABA response loci of Arabidopsis. Plant J (2001) 2.17
The abscisic acid-responsive kinase PKABA1 interacts with a seed-specific abscisic acid response element-binding factor, TaABF, and phosphorylates TaABF peptide sequences. Plant Physiol (2002) 2.05
The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes. Plant J (2000) 1.95
Chlororespiration and cyclic electron flow around PSI during photosynthesis and plant stress response. Plant Cell Environ (2007) 1.95
ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance. Plant J (2004) 1.95
Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response. Plant Physiol (2002) 1.86
OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice. Plant Physiol (2005) 1.76
Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci U S A (2005) 1.75
Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiol (2005) 1.73
Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression. Plant Mol Biol (2000) 1.73
Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. Plant Physiol (2005) 1.70
The crucial role of plant mitochondria in orchestrating drought tolerance. Ann Bot (2008) 1.70
Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis. Plant Mol Biol (2006) 1.68
The effect of stress on genome regulation and structure. Ann Bot (2004) 1.66
Identification of cryptic lox sites in the yeast genome by selection for Cre-mediated chromosome translocations that confer multiple drug resistance. J Mol Biol (1992) 1.57
Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities. Plant Physiol (2002) 1.55
Regulation of Arabidopsis thaliana Em genes: role of ABI5. Plant J (2002) 1.54
A metabolomic study of substantial equivalence of field-grown genetically modified wheat. Plant Biotechnol J (2006) 1.52
Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell (2002) 1.51
Directed excision of a transgene from the plant genome. Mol Gen Genet (1992) 1.48
Redundant and distinct functions of the ABA response loci ABA-INSENSITIVE(ABI)5 and ABRE-BINDING FACTOR (ABF)3. Plant Mol Biol (2005) 1.45
STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis. Plant Cell (2006) 1.41
Impacts of altered RNA metabolism on abscisic acid signaling. Curr Opin Plant Biol (2003) 1.35
The chloroplast clpP gene, encoding a proteolytic subunit of ATP-dependent protease, is indispensable for chloroplast development in tobacco. Plant Cell Physiol (2001) 1.32
Transgenic Arabidopsis plants expressing the type 1 inositol 5-phosphatase exhibit increased drought tolerance and altered abscisic acid signaling. Plant Cell (2008) 1.32
A mutation in the Cap Binding Protein 20 gene confers drought tolerance to Arabidopsis. Plant Mol Biol (2004) 1.32
Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products. Plant Physiol (2008) 1.32
Effect of drought stress on lipid metabolism in the leaves of Arabidopsis thaliana (ecotype Columbia). Ann Bot (2004) 1.31
C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development. Proc Natl Acad Sci U S A (2002) 1.30
Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics (2007) 1.29
Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thaliana. J Genet Genomics (2009) 1.29
Repression of stress-responsive genes by FIERY2, a novel transcriptional regulator in Arabidopsis. Proc Natl Acad Sci U S A (2002) 1.26
A system for insertional mutagenesis and chromosomal rearrangement using the Ds transposon and Cre-lox. Plant J (1995) 1.25
Chlororespiration and poising of cyclic electron transport. Plastoquinone as electron transporter between thylakoid NADH dehydrogenase and peroxidase. J Biol Chem (2000) 1.25
A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling. Plant Mol Biol (2006) 1.24
Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. Plant J (2007) 1.20
Comparison of tuber proteomes of potato varieties, landraces, and genetically modified lines. Plant Physiol (2005) 1.17
Reduction of Cre recombinase toxicity in proliferating Drosophila cells by estrogen-dependent activity regulation. Dev Genes Evol (2001) 1.16
Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding. Plant Biotechnol J (2006) 1.12
Analysis of ABA hypersensitive germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis. Plant J (2005) 1.11
ARIA, an Arabidopsis arm repeat protein interacting with a transcriptional regulator of abscisic acid-responsive gene expression, is a novel abscisic acid signaling component. Plant Physiol (2004) 1.10
Efficient elimination of selectable marker genes from the plastid genome by the CRE-lox site-specific recombination system. Plant J (2001) 1.09
Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars. J Agric Food Chem (2008) 1.09
Cre-lox recombination: Cre-ative tools for plant biotechnology. Trends Biotechnol (2003) 1.08
Evolutionary complexity of MADS complexes. Curr Opin Plant Biol (2006) 1.04
Characterization of three homologous basic leucine zipper transcription factors (bZIP) of the ABI5 family during Arabidopsis thaliana embryo maturation. J Exp Bot (2005) 1.03
Over-expression of a transcription factor regulating ABA-responsive gene expression confers multiple stress tolerance. Plant Biotechnol J (2004) 0.98
A microarray-based comparative analysis of gene expression profiles during grain development in transgenic and wild type wheat. Transgenic Res (2005) 0.98
Proteomics as a tool to improve investigation of substantial equivalence in genetically modified organisms: the case of a virus-resistant tomato. Proteomics (2004) 0.97
Cre/ lox site-specific recombination controls the excision of a transgene from the rice genome. Theor Appl Genet (2002) 0.96
The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA. Plant J (2005) 0.96
Selectable marker genes and unintended changes to the plant transcriptome. Plant Biotechnol J (2009) 0.94
The pleiotropic effects of the bar gene and glufosinate on the Arabidopsis transcriptome. Plant Biotechnol J (2009) 0.94
Multiple pathways for Cre/lox-mediated recombination in plastids. Plant J (2001) 0.94
HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell (2005) 2.06
pORE: a modular binary vector series suited for both monocot and dicot plant transformation. Transgenic Res (2007) 1.59
Combined transcriptome and proteome analysis identifies pathways and markers associated with the establishment of rapeseed microspore-derived embryo development. Plant Physiol (2007) 1.28
Expression and function of HD2-type histone deacetylases in Arabidopsis development. Plant J (2004) 1.22
Repression of gene expression by Arabidopsis HD2 histone deacetylases. Plant J (2003) 1.17
Functional analysis of tomato Pti4 in Arabidopsis. Plant Physiol (2002) 1.06
Control of somatic embryogenesis and embryo development by AP2 transcription factors. Plant Mol Biol (2010) 1.04
CSR1, the sole target of imidazolinone herbicide in Arabidopsis thaliana. Plant Cell Physiol (2007) 1.00
Functional characterization of a UDP-glucose:flavonoid 3-O-glucosyltransferase from the seed coat of black soybean (Glycine max (L.) Merr.). Phytochemistry (2010) 0.96
The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA. Plant J (2005) 0.96
The pleiotropic effects of the bar gene and glufosinate on the Arabidopsis transcriptome. Plant Biotechnol J (2009) 0.94
Expression of a fungal ferulic acid esterase in alfalfa modifies cell wall digestibility. Biotechnol Biofuels (2014) 0.91
Role of HD2 genes in seed germination and early seedling growth in Arabidopsis. Plant Cell Rep (2011) 0.88
Identification of two anthocyanidin reductase genes and three red-brown soybean accessions with reduced anthocyanidin reductase 1 mRNA, activity, and seed coat proanthocyanidin amounts. J Agric Food Chem (2012) 0.85
Combined analysis of transcriptome and metabolite data reveals extensive differences between black and brown nearly-isogenic soybean (Glycine max) seed coats enabling the identification of pigment isogenes. BMC Genomics (2011) 0.85
CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol Biol (2003) 0.82
The cryptic enhancer elements of the tCUP promoter. Plant Mol Biol (2003) 0.79
Comparability of imazapyr-resistant Arabidopsis created by transgenesis and mutagenesis. Transgenic Res (2012) 0.78
Coloring genetically modified soybean grains with anthocyanins by suppression of the proanthocyanidin genes ANR1 and ANR2. Transgenic Res (2011) 0.78
Analysis and use of the tobacco eIF4A-10 promoter elements for transgene expression. J Plant Physiol (2005) 0.75