PubRank

David B Jaffe

Author PubWeight™ 534.03‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Initial sequencing and comparative analysis of the mouse genome. Nature 2002 96.15
2 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007 75.09
3 Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007 65.18
4 Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 2008 30.29
5 Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol 2009 27.17
6 Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 2005 23.04
7 High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci U S A 2010 22.97
8 ARACHNE: a whole-genome shotgun assembler. Genome Res 2002 22.72
9 ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res 2008 20.61
10 Evolution of genes and genomes on the Drosophila phylogeny. Nature 2007 18.01
11 High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat Methods 2008 12.56
12 Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Res 2008 10.49
13 Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 2011 9.18
14 A high-resolution map of human evolutionary constraint using 29 mammals. Nature 2011 8.67
15 Integrative analysis of the melanoma transcriptome. Genome Res 2010 8.46
16 Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res 2011 8.38
17 Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res 2007 7.05
18 ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome Biol 2009 6.76
19 Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 2006 5.52
20 The genomic basis of adaptive evolution in threespine sticklebacks. Nature 2012 5.20
21 A genome-wide map of diversity in Plasmodium falciparum. Nat Genet 2006 4.50
22 Characterizing and measuring bias in sequence data. Genome Biol 2013 4.39
23 An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proc Natl Acad Sci U S A 2005 4.38
24 Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience 2013 4.11
25 Molecular diagnosis of infantile mitochondrial disease with targeted next-generation sequencing. Sci Transl Med 2012 4.02
26 Finished bacterial genomes from shotgun sequence data. Genome Res 2012 3.86
27 A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454. Genome Biol 2010 2.79
28 The African coelacanth genome provides insights into tetrapod evolution. Nature 2013 2.78
29 Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. Genome Res 2005 2.69
30 Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Nat Methods 2008 2.61
31 DNA sequence and analysis of human chromosome 8. Nature 2006 1.91
32 DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Nature 2006 1.81
33 Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing. Nat Genet 2013 1.52
34 Paired-end sequencing of Fosmid libraries by Illumina. Genome Res 2012 1.52
35 Analysis of the DNA sequence and duplication history of human chromosome 15. Nature 2006 1.50
36 Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping. Nat Rev Genet 2005 1.33
37 Assisted assembly: how to improve a de novo genome assembly by using related species. Genome Biol 2009 1.28
38 Oxidative modification of M-type K(+) channels as a mechanism of cytoprotective neuronal silencing. EMBO J 2006 1.28
39 Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b. Hippocampus 2008 1.24
40 Angiotensin II regulates neuronal excitability via phosphatidylinositol 4,5-bisphosphate-dependent modulation of Kv7 (M-type) K+ channels. J Physiol 2006 1.16
41 Inositol triphosphate-mediated Ca2+ signals direct purinergic P2Y receptor regulation of neuronal ion channels. J Neurosci 2007 1.14
42 Human chromosome 11 DNA sequence and analysis including novel gene identification. Nature 2006 1.09
43 DNA sequence and analysis of human chromosome 18. Nature 2005 1.05
44 Local GABAergic signaling within sensory ganglia controls peripheral nociceptive transmission. J Clin Invest 2017 0.75