Published in Genome Biol on February 05, 2010
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol (2010) 6.07
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries. Genome Biol (2011) 5.11
Unlocking short read sequencing for metagenomics. PLoS One (2010) 4.88
Modelling and simulating generic RNA-Seq experiments with the flux simulator. Nucleic Acids Res (2012) 4.81
Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity (Edinb) (2010) 3.22
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Res (2012) 2.91
Topographic diversity of fungal and bacterial communities in human skin. Nature (2013) 2.79
Next-generation sequencing for HLA typing of class I loci. BMC Genomics (2011) 1.99
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes? BMC Genomics (2012) 1.84
NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics (2012) 1.76
Commensal-dendritic-cell interaction specifies a unique protective skin immune signature. Nature (2015) 1.72
High-resolution linkage map and chromosome-scale genome assembly for cassava (Manihot esculenta Crantz) from 10 populations. G3 (Bethesda) (2014) 1.65
Genomics of Loa loa, a Wolbachia-free filarial parasite of humans. Nat Genet (2013) 1.52
Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta. Genome Biol (2013) 1.41
The success of acinetobacter species; genetic, metabolic and virulence attributes. PLoS One (2012) 1.39
The altered landscape of the human skin microbiome in patients with primary immunodeficiencies. Genome Res (2013) 1.35
Bacterial communities of the coronal sulcus and distal urethra of adolescent males. PLoS One (2012) 1.34
Large scale library generation for high throughput sequencing. PLoS One (2011) 1.31
Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity. J Virol (2012) 1.25
Semi-automated library preparation for high-throughput DNA sequencing platforms. J Biomed Biotechnol (2010) 1.22
A High-Throughput Method for Illumina RNA-Seq Library Preparation. Front Plant Sci (2012) 1.20
Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. PLoS Genet (2013) 1.18
Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biol Evol (2011) 1.10
Clinical implementation of comprehensive strategies to characterize cancer genomes: opportunities and challenges. Cancer Discov (2011) 1.07
Characterization of a model of lethal dengue virus 2 infection in C57BL/6 mice deficient in the alpha/beta interferon receptor. J Gen Virol (2012) 1.05
A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses. BMC Biol (2011) 0.96
Ultra high throughput sequencing in human DNA variation detection: a comparative study on the NDUFA3-PRPF31 region. PLoS One (2010) 0.92
Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer. PLoS One (2012) 0.91
Genotyping 1000 yeast strains by next-generation sequencing. BMC Genomics (2013) 0.90
A Comparative Epigenomic Analysis of Polyploidy-Derived Genes in Soybean and Common Bean. Plant Physiol (2015) 0.90
Scalable transcriptome preparation for massive parallel sequencing. PLoS One (2011) 0.89
A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens. Nucleic Acids Res (2012) 0.89
Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq. Forensic Sci Int Genet (2014) 0.89
Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain. Virology (2013) 0.89
Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species. Curr Genet (2015) 0.85
Identification of SNPs in closely related Temperate Japonica rice cultivars using restriction enzyme-phased sequencing. PLoS One (2013) 0.85
A microfluidic DNA library preparation platform for next-generation sequencing. PLoS One (2013) 0.82
A simple method for semi-random DNA amplicon fragmentation using the methylation-dependent restriction enzyme MspJI. BMC Biotechnol (2015) 0.81
Tracking the evolution of dengue virus strains D2S10 and D2S20 by 454 pyrosequencing. PLoS One (2013) 0.79
Using high-throughput sequencing to leverage surveillance of genetic diversity and oseltamivir resistance: a pilot study during the 2009 influenza A(H1N1) pandemic. PLoS One (2013) 0.79
High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)). Stand Genomic Sci (2011) 0.78
A microfluidic device for preparing next generation DNA sequencing libraries and for automating other laboratory protocols that require one or more column chromatography steps. PLoS One (2013) 0.78
High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae. Stand Genomic Sci (2015) 0.78
Semiconductor-based DNA sequencing of histone modification states. Nat Commun (2013) 0.78
An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Sci Rep (2016) 0.77
Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate. PLoS One (2014) 0.77
Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes. Plant Biotechnol J (2016) 0.77
Rapid flow-sorting to simultaneously resolve multiplex massively parallel sequencing products. Sci Rep (2011) 0.75
Use of the melting curve assay as a means for high-throughput quantification of Illumina sequencing libraries. PeerJ (2016) 0.75
Genome sequencing in microfabricated high-density picolitre reactors. Nature (2005) 150.21
Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet (2008) 68.81
Functional profiling of the Saccharomyces cerevisiae genome. Nature (2002) 36.10
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods (2008) 32.71
The NIH Human Microbiome Project. Genome Res (2009) 24.61
A large genome center's improvements to the Illumina sequencing system. Nat Methods (2008) 15.56
DNA sequencing. A plan to capture human diversity in 1000 genomes. Science (2008) 13.17
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods (2009) 10.41
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One (2007) 9.17
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proc Natl Acad Sci U S A (2009) 6.01
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res (2007) 5.33
DNA purification and isolation using a solid-phase. Nucleic Acids Res (1994) 4.90
From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic Acids Res (2007) 4.26
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PLoS One (2008) 4.03
BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing. BMC Bioinformatics (2009) 2.78
A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR. BMC Biotechnol (2008) 2.60
Ultrasound-biophysics mechanisms. Prog Biophys Mol Biol (2006) 2.49
A DNA microarray-based genetic screen for nonhomologous end-joining mutants in Saccharomyces cerevisiae. Science (2001) 2.16
Genetic code, hamming distance and stochastic matrices. Bull Math Biol (2004) 0.93
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature (2007) 65.18
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
Model-based analysis of ChIP-Seq (MACS). Genome Biol (2008) 51.63
Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature (2008) 30.29
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol (2009) 27.17
Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci U S A (2010) 22.97
ARACHNE: a whole-genome shotgun assembler. Genome Res (2002) 22.72
ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res (2008) 20.61
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol (2010) 18.44
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res (2011) 17.21
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell (2006) 15.12
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res (2006) 13.32
High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat Methods (2008) 12.56
The genome sequence of the filamentous fungus Neurospora crassa. Nature (2003) 11.39
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet (2008) 11.17
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell (2005) 10.68
Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Res (2008) 10.49
The major genetic determinants of HIV-1 control affect HLA class I peptide presentation. Science (2010) 9.61
Genome sequence of Aedes aegypti, a major arbovirus vector. Science (2007) 9.19
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol (2011) 9.18
Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat Methods (2010) 9.09
A high-resolution map of human evolutionary constraint using 29 mammals. Nature (2011) 8.67
Integrative analysis of the melanoma transcriptome. Genome Res (2010) 8.46
Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res (2011) 8.38
A catalog of reference genomes from the human microbiome. Science (2010) 8.10
Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing. Nat Biotechnol (2013) 7.97
Methylation of histone H3 Lys 4 in coding regions of active genes. Proc Natl Acad Sci U S A (2002) 7.67
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev (2010) 7.14
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res (2007) 7.05
Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing. Nat Med (2006) 6.96
The genome sequence of the rice blast fungus Magnaporthe grisea. Nature (2005) 6.95
Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies. Nat Med (2012) 6.77
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome Biol (2009) 6.76
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proc Natl Acad Sci U S A (2009) 6.01
Comparative functional genomics of the fission yeasts. Science (2011) 6.00
Phospho-regulation of kinetochore-microtubule attachments by the Aurora kinase Ipl1p. Cell (2002) 5.91